data_1KHW # _model_server_result.job_id I5Mm6cr2r5ivb7dLaahd0A _model_server_result.datetime_utc '2025-01-11 22:09:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1khw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 1KHW # _exptl.entry_id 1KHW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KHW _cell.length_a 70.694 _cell.length_b 119.845 _cell.length_c 159.498 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KHW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 333 A CYS 333 1_555 A SG CYS 340 A CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OD1 ASP 250 A ASP 250 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A OD2 ASP 250 A ASP 250 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 A O TYR 251 A TYR 251 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 A OD1 ASP 354 A ASP 354 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc5 C MN MN . A MN 601 1_555 G O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 B O TYR 251 B TYR 251 1_555 F MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc7 B OD1 ASP 354 B ASP 354 1_555 E MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc8 E MN MN . B MN 603 1_555 H O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc9 F MN MN . B MN 604 1_555 H O HOH . B HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KHW _atom_sites.fract_transf_matrix[1][1] 0.014145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 601 1 MN MN . D 2 MN A 1 602 2 MN MN . E 2 MN B 1 603 3 MN MN . F 2 MN B 1 604 4 MN MN . G 3 HOH A 1 603 1 HOH HOH . G 3 HOH A 2 604 2 HOH HOH . G 3 HOH A 3 605 3 HOH HOH . G 3 HOH A 4 606 6 HOH HOH . G 3 HOH A 5 607 7 HOH HOH . G 3 HOH A 6 608 8 HOH HOH . G 3 HOH A 7 609 9 HOH HOH . G 3 HOH A 8 610 10 HOH HOH . G 3 HOH A 9 611 12 HOH HOH . G 3 HOH A 10 612 15 HOH HOH . G 3 HOH A 11 613 16 HOH HOH . G 3 HOH A 12 614 18 HOH HOH . G 3 HOH A 13 615 19 HOH HOH . G 3 HOH A 14 616 20 HOH HOH . G 3 HOH A 15 617 22 HOH HOH . G 3 HOH A 16 618 24 HOH HOH . G 3 HOH A 17 619 26 HOH HOH . G 3 HOH A 18 620 27 HOH HOH . G 3 HOH A 19 621 29 HOH HOH . G 3 HOH A 20 622 30 HOH HOH . G 3 HOH A 21 623 31 HOH HOH . G 3 HOH A 22 624 32 HOH HOH . G 3 HOH A 23 625 35 HOH HOH . G 3 HOH A 24 626 36 HOH HOH . G 3 HOH A 25 627 44 HOH HOH . H 3 HOH B 1 605 4 HOH HOH . H 3 HOH B 2 606 5 HOH HOH . H 3 HOH B 3 607 11 HOH HOH . H 3 HOH B 4 608 13 HOH HOH . H 3 HOH B 5 609 14 HOH HOH . H 3 HOH B 6 610 17 HOH HOH . H 3 HOH B 7 611 21 HOH HOH . H 3 HOH B 8 612 23 HOH HOH . H 3 HOH B 9 613 25 HOH HOH . H 3 HOH B 10 614 28 HOH HOH . H 3 HOH B 11 615 33 HOH HOH . H 3 HOH B 12 616 34 HOH HOH . H 3 HOH B 13 617 37 HOH HOH . H 3 HOH B 14 618 38 HOH HOH . H 3 HOH B 15 619 39 HOH HOH . H 3 HOH B 16 620 40 HOH HOH . H 3 HOH B 17 621 41 HOH HOH . H 3 HOH B 18 622 42 HOH HOH . H 3 HOH B 19 623 43 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 52.084 _atom_site.Cartn_y 71.324 _atom_site.Cartn_z 46.879 _atom_site.occupancy 0.4 _atom_site.B_iso_or_equiv 84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 603 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #