data_1KI3
#
_model_server_result.job_id            Mz99j-qfFvkyz8EMgWTWDw 
_model_server_result.datetime_utc      '2024-11-26 21:18:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ki3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    1KI3 
#
_exptl.entry_id    1KI3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              253.258 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-(4-HYDROXY-3-(HYDROXYMETHYL)BUT-1-YL)GUANINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KI3 
_cell.length_a            113.8 
_cell.length_b            117.7 
_cell.length_c            108.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KI3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H15 N5 O3' 
_chem_comp.formula_weight    253.258 
_chem_comp.id                PE2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-(4-HYDROXY-3-(HYDROXYMETHYL)BUT-1-YL)GUANINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N3 PE2 doub 237 n n 
C2 N2 PE2 sing 238 n n 
C2 N1 PE2 sing 239 n n 
C4 C5 PE2 doub 240 n y 
C4 N9 PE2 sing 241 n y 
C4 N3 PE2 sing 242 n n 
C5 C6 PE2 sing 243 n n 
C5 N7 PE2 sing 244 n y 
C4' O4' PE2 sing 245 n n 
C4' C2' PE2 sing 246 n n 
C4' "H4'1" PE2 sing 247 n n 
C4' "H4'2" PE2 sing 248 n n 
O4' HO4' PE2 sing 249 n n 
C3' O3' PE2 sing 250 n n 
C3' C2' PE2 sing 251 n n 
C3' "H3'1" PE2 sing 252 n n 
C3' "H3'2" PE2 sing 253 n n 
O3' HO3' PE2 sing 254 n n 
C2' C12 PE2 sing 255 n n 
C2' H2' PE2 sing 256 n n 
C12 C1' PE2 sing 257 n n 
C12 H121 PE2 sing 258 n n 
C12 H122 PE2 sing 259 n n 
C1' N9 PE2 sing 260 n n 
C1' "H1'1" PE2 sing 261 n n 
C1' "H1'2" PE2 sing 262 n n 
N9 C8 PE2 sing 263 n y 
N2 HN21 PE2 sing 264 n n 
N2 HN22 PE2 sing 265 n n 
N1 C6 PE2 sing 266 n n 
N1 HN1 PE2 sing 267 n n 
C6 O6 PE2 doub 268 n n 
N7 C8 PE2 doub 269 n y 
C8 H8 PE2 sing 270 n n 
#
_atom_sites.entry_id                     1KI3 
_atom_sites.fract_transf_matrix[1][1]    0.008787 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008496 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009208 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 3 3 SO4 SO4 . 
D 3 PE2 A 1 1 1 PE2 PE2 . 
E 2 SO4 B 1 4 4 SO4 SO4 . 
F 3 PE2 B 1 2 2 PE2 PE2 . 
G 4 HOH A 1 502 502 HOH HOH . 
G 4 HOH A 2 503 503 HOH HOH . 
G 4 HOH A 3 504 504 HOH HOH . 
G 4 HOH A 4 505 505 HOH HOH . 
G 4 HOH A 5 507 507 HOH HOH . 
G 4 HOH A 6 513 513 HOH HOH . 
G 4 HOH A 7 514 514 HOH HOH . 
G 4 HOH A 8 515 515 HOH HOH . 
G 4 HOH A 9 516 516 HOH HOH . 
G 4 HOH A 10 519 519 HOH HOH . 
G 4 HOH A 11 520 520 HOH HOH . 
G 4 HOH A 12 522 522 HOH HOH . 
G 4 HOH A 13 524 524 HOH HOH . 
G 4 HOH A 14 525 525 HOH HOH . 
G 4 HOH A 15 526 526 HOH HOH . 
G 4 HOH A 16 529 529 HOH HOH . 
G 4 HOH A 17 533 533 HOH HOH . 
G 4 HOH A 18 539 539 HOH HOH . 
G 4 HOH A 19 540 540 HOH HOH . 
G 4 HOH A 20 542 542 HOH HOH . 
G 4 HOH A 21 544 544 HOH HOH . 
G 4 HOH A 22 545 545 HOH HOH . 
G 4 HOH A 23 546 546 HOH HOH . 
G 4 HOH A 24 547 547 HOH HOH . 
G 4 HOH A 25 548 548 HOH HOH . 
G 4 HOH A 26 552 552 HOH HOH . 
G 4 HOH A 27 553 553 HOH HOH . 
G 4 HOH A 28 554 554 HOH HOH . 
G 4 HOH A 29 556 556 HOH HOH . 
G 4 HOH A 30 558 558 HOH HOH . 
G 4 HOH A 31 559 559 HOH HOH . 
G 4 HOH A 32 560 560 HOH HOH . 
G 4 HOH A 33 562 562 HOH HOH . 
G 4 HOH A 34 563 563 HOH HOH . 
G 4 HOH A 35 564 564 HOH HOH . 
G 4 HOH A 36 566 566 HOH HOH . 
G 4 HOH A 37 567 567 HOH HOH . 
G 4 HOH A 38 569 569 HOH HOH . 
G 4 HOH A 39 570 570 HOH HOH . 
G 4 HOH A 40 572 572 HOH HOH . 
G 4 HOH A 41 573 573 HOH HOH . 
G 4 HOH A 42 574 574 HOH HOH . 
G 4 HOH A 43 575 575 HOH HOH . 
G 4 HOH A 44 580 580 HOH HOH . 
G 4 HOH A 45 585 585 HOH HOH . 
G 4 HOH A 46 586 586 HOH HOH . 
G 4 HOH A 47 596 596 HOH HOH . 
G 4 HOH A 48 597 597 HOH HOH . 
G 4 HOH A 49 599 599 HOH HOH . 
G 4 HOH A 50 600 600 HOH HOH . 
G 4 HOH A 51 601 601 HOH HOH . 
G 4 HOH A 52 604 604 HOH HOH . 
G 4 HOH A 53 606 606 HOH HOH . 
G 4 HOH A 54 607 607 HOH HOH . 
G 4 HOH A 55 608 608 HOH HOH . 
G 4 HOH A 56 610 610 HOH HOH . 
G 4 HOH A 57 611 611 HOH HOH . 
G 4 HOH A 58 612 612 HOH HOH . 
G 4 HOH A 59 614 614 HOH HOH . 
G 4 HOH A 60 615 615 HOH HOH . 
G 4 HOH A 61 616 616 HOH HOH . 
G 4 HOH A 62 617 617 HOH HOH . 
G 4 HOH A 63 618 618 HOH HOH . 
G 4 HOH A 64 622 622 HOH HOH . 
G 4 HOH A 65 624 624 HOH HOH . 
G 4 HOH A 66 625 625 HOH HOH . 
G 4 HOH A 67 626 626 HOH HOH . 
G 4 HOH A 68 627 627 HOH HOH . 
G 4 HOH A 69 632 632 HOH HOH . 
H 4 HOH B 1 501 501 HOH HOH . 
H 4 HOH B 2 506 506 HOH HOH . 
H 4 HOH B 3 508 508 HOH HOH . 
H 4 HOH B 4 509 509 HOH HOH . 
H 4 HOH B 5 510 510 HOH HOH . 
H 4 HOH B 6 511 511 HOH HOH . 
H 4 HOH B 7 512 512 HOH HOH . 
H 4 HOH B 8 517 517 HOH HOH . 
H 4 HOH B 9 518 518 HOH HOH . 
H 4 HOH B 10 521 521 HOH HOH . 
H 4 HOH B 11 523 523 HOH HOH . 
H 4 HOH B 12 527 527 HOH HOH . 
H 4 HOH B 13 528 528 HOH HOH . 
H 4 HOH B 14 530 530 HOH HOH . 
H 4 HOH B 15 531 531 HOH HOH . 
H 4 HOH B 16 532 532 HOH HOH . 
H 4 HOH B 17 534 534 HOH HOH . 
H 4 HOH B 18 535 535 HOH HOH . 
H 4 HOH B 19 536 536 HOH HOH . 
H 4 HOH B 20 537 537 HOH HOH . 
H 4 HOH B 21 538 538 HOH HOH . 
H 4 HOH B 22 541 541 HOH HOH . 
H 4 HOH B 23 543 543 HOH HOH . 
H 4 HOH B 24 549 549 HOH HOH . 
H 4 HOH B 25 550 550 HOH HOH . 
H 4 HOH B 26 551 551 HOH HOH . 
H 4 HOH B 27 555 555 HOH HOH . 
H 4 HOH B 28 557 557 HOH HOH . 
H 4 HOH B 29 561 561 HOH HOH . 
H 4 HOH B 30 565 565 HOH HOH . 
H 4 HOH B 31 568 568 HOH HOH . 
H 4 HOH B 32 571 571 HOH HOH . 
H 4 HOH B 33 576 576 HOH HOH . 
H 4 HOH B 34 577 577 HOH HOH . 
H 4 HOH B 35 578 578 HOH HOH . 
H 4 HOH B 36 579 579 HOH HOH . 
H 4 HOH B 37 581 581 HOH HOH . 
H 4 HOH B 38 582 582 HOH HOH . 
H 4 HOH B 39 583 583 HOH HOH . 
H 4 HOH B 40 584 584 HOH HOH . 
H 4 HOH B 41 587 587 HOH HOH . 
H 4 HOH B 42 588 588 HOH HOH . 
H 4 HOH B 43 589 589 HOH HOH . 
H 4 HOH B 44 590 590 HOH HOH . 
H 4 HOH B 45 591 591 HOH HOH . 
H 4 HOH B 46 592 592 HOH HOH . 
H 4 HOH B 47 593 593 HOH HOH . 
H 4 HOH B 48 594 594 HOH HOH . 
H 4 HOH B 49 595 595 HOH HOH . 
H 4 HOH B 50 598 598 HOH HOH . 
H 4 HOH B 51 602 602 HOH HOH . 
H 4 HOH B 52 603 603 HOH HOH . 
H 4 HOH B 53 605 605 HOH HOH . 
H 4 HOH B 54 609 609 HOH HOH . 
H 4 HOH B 55 613 613 HOH HOH . 
H 4 HOH B 56 619 619 HOH HOH . 
H 4 HOH B 57 620 620 HOH HOH . 
H 4 HOH B 58 621 621 HOH HOH . 
H 4 HOH B 59 623 623 HOH HOH . 
H 4 HOH B 60 628 628 HOH HOH . 
H 4 HOH B 61 629 629 HOH HOH . 
H 4 HOH B 62 630 630 HOH HOH . 
H 4 HOH B 63 631 631 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PE2 . . . D 3 43.782 84.918 54.032 1 21.53 ? C2 PE2 1 A 1 
HETATM 2 C C4 PE2 . . . D 3 45.562 85.164 55.397 1 23.32 ? C4 PE2 1 A 1 
HETATM 3 C C5 PE2 . . . D 3 44.898 86.007 56.283 1 21.88 ? C5 PE2 1 A 1 
HETATM 4 C C4' PE2 . . . D 3 50.093 82.186 53.342 1 22.18 ? C4' PE2 1 A 1 
HETATM 5 O O4' PE2 . . . D 3 51.083 81.429 54.066 1 19.6 ? O4' PE2 1 A 1 
HETATM 6 C C3' PE2 . . . D 3 50.888 84.184 54.258 1 22.35 ? C3' PE2 1 A 1 
HETATM 7 O O3' PE2 . . . D 3 51.317 84.336 52.848 1 23.85 ? O3' PE2 1 A 1 
HETATM 8 C C2' PE2 . . . D 3 49.783 83.201 54.34 1 20.98 ? C2' PE2 1 A 1 
HETATM 9 C C12 PE2 . . . D 3 48.479 83.851 54.049 1 22.68 ? C12 PE2 1 A 1 
HETATM 10 C C1' PE2 . . . D 3 47.991 84.17 55.461 1 21.28 ? C1' PE2 1 A 1 
HETATM 11 N N9 PE2 . . . D 3 46.839 84.992 55.931 1 22.25 ? N9 PE2 1 A 1 
HETATM 12 N N3 PE2 . . . D 3 45.075 84.579 54.233 1 22.04 ? N3 PE2 1 A 1 
HETATM 13 N N2 PE2 . . . D 3 43.193 84.393 52.934 1 18.96 ? N2 PE2 1 A 1 
HETATM 14 N N1 PE2 . . . D 3 43.053 85.79 54.881 1 19 ? N1 PE2 1 A 1 
HETATM 15 C C6 PE2 . . . D 3 43.549 86.393 56.047 1 21.14 ? C6 PE2 1 A 1 
HETATM 16 O O6 PE2 . . . D 3 42.905 87.162 56.782 1 20.19 ? O6 PE2 1 A 1 
HETATM 17 N N7 PE2 . . . D 3 45.727 86.38 57.34 1 20.1 ? N7 PE2 1 A 1 
HETATM 18 C C8 PE2 . . . D 3 46.801 85.738 57.063 1 22.43 ? C8 PE2 1 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#