data_1KI7
#
_model_server_result.job_id            enSjdb4hy81nyW0LN2kJrQ 
_model_server_result.datetime_utc      '2024-11-23 05:04:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ki7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2}' 
#
_entry.id    1KI7 
#
_exptl.entry_id    1KI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              354.099 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-IODODEOXYURIDINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KI7 
_cell.length_a            113.6 
_cell.length_b            116.6 
_cell.length_c            108.4 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 116.6 108.4 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C9 H11 I N2 O5' 
_chem_comp.formula_weight    354.099 
_chem_comp.id                ID2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-IODODEOXYURIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O2 ID2 doub 152 n n 
C2 N1 ID2 sing 153 n n 
C2 N3 ID2 sing 154 n n 
C4 C5 ID2 sing 155 n n 
C4 N3 ID2 sing 156 n n 
C4 O4 ID2 doub 157 n n 
C5 C6 ID2 doub 158 n n 
C5 I ID2 sing 159 n n 
C6 N1 ID2 sing 160 n n 
C6 H6 ID2 sing 161 n n 
O5' C5' ID2 sing 162 n n 
O5' HO5' ID2 sing 163 n n 
C5' C4' ID2 sing 164 n n 
C5' "H5'1" ID2 sing 165 n n 
C5' "H5'2" ID2 sing 166 n n 
C4' O4' ID2 sing 167 n n 
C4' C3' ID2 sing 168 n n 
C4' H4' ID2 sing 169 n n 
O4' C1' ID2 sing 170 n n 
C1' N1 ID2 sing 171 n n 
C1' C2' ID2 sing 172 n n 
C1' H1' ID2 sing 173 n n 
N3 HN3 ID2 sing 174 n n 
C2' C3' ID2 sing 175 n n 
C2' "H2'1" ID2 sing 176 n n 
C2' "H2'2" ID2 sing 177 n n 
C3' O3' ID2 sing 178 n n 
C3' H3' ID2 sing 179 n n 
O3' HO3' ID2 sing 180 n n 
#
_atom_sites.entry_id                     1KI7 
_atom_sites.fract_transf_matrix[1][1]    0.008803 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008576 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 3 3 SO4 SO4 . 
D 3 ID2 A 1 1 1 ID2 ID2 . 
E 2 SO4 B 1 4 4 SO4 SO4 . 
F 3 ID2 B 1 2 2 ID2 ID2 . 
G 4 HOH A 1 501 501 HOH HOH . 
G 4 HOH A 2 502 502 HOH HOH . 
G 4 HOH A 3 503 503 HOH HOH . 
G 4 HOH A 4 504 504 HOH HOH . 
G 4 HOH A 5 505 505 HOH HOH . 
G 4 HOH A 6 507 507 HOH HOH . 
G 4 HOH A 7 509 509 HOH HOH . 
G 4 HOH A 8 510 510 HOH HOH . 
G 4 HOH A 9 514 514 HOH HOH . 
G 4 HOH A 10 516 516 HOH HOH . 
G 4 HOH A 11 517 517 HOH HOH . 
G 4 HOH A 12 520 520 HOH HOH . 
G 4 HOH A 13 521 521 HOH HOH . 
G 4 HOH A 14 523 523 HOH HOH . 
G 4 HOH A 15 525 525 HOH HOH . 
G 4 HOH A 16 531 531 HOH HOH . 
G 4 HOH A 17 535 535 HOH HOH . 
G 4 HOH A 18 536 536 HOH HOH . 
G 4 HOH A 19 538 538 HOH HOH . 
G 4 HOH A 20 539 539 HOH HOH . 
G 4 HOH A 21 540 540 HOH HOH . 
G 4 HOH A 22 542 542 HOH HOH . 
G 4 HOH A 23 543 543 HOH HOH . 
G 4 HOH A 24 544 544 HOH HOH . 
G 4 HOH A 25 545 545 HOH HOH . 
G 4 HOH A 26 546 546 HOH HOH . 
G 4 HOH A 27 549 549 HOH HOH . 
G 4 HOH A 28 550 550 HOH HOH . 
G 4 HOH A 29 551 551 HOH HOH . 
G 4 HOH A 30 555 555 HOH HOH . 
G 4 HOH A 31 557 557 HOH HOH . 
G 4 HOH A 32 559 559 HOH HOH . 
G 4 HOH A 33 560 560 HOH HOH . 
G 4 HOH A 34 561 561 HOH HOH . 
G 4 HOH A 35 562 562 HOH HOH . 
G 4 HOH A 36 564 564 HOH HOH . 
G 4 HOH A 37 565 565 HOH HOH . 
G 4 HOH A 38 566 566 HOH HOH . 
G 4 HOH A 39 567 567 HOH HOH . 
G 4 HOH A 40 568 568 HOH HOH . 
G 4 HOH A 41 572 572 HOH HOH . 
G 4 HOH A 42 574 574 HOH HOH . 
G 4 HOH A 43 576 576 HOH HOH . 
G 4 HOH A 44 577 577 HOH HOH . 
G 4 HOH A 45 580 580 HOH HOH . 
G 4 HOH A 46 582 582 HOH HOH . 
G 4 HOH A 47 584 584 HOH HOH . 
G 4 HOH A 48 586 586 HOH HOH . 
G 4 HOH A 49 587 587 HOH HOH . 
G 4 HOH A 50 588 588 HOH HOH . 
G 4 HOH A 51 591 591 HOH HOH . 
G 4 HOH A 52 594 594 HOH HOH . 
G 4 HOH A 53 595 595 HOH HOH . 
G 4 HOH A 54 596 596 HOH HOH . 
G 4 HOH A 55 597 597 HOH HOH . 
G 4 HOH A 56 598 598 HOH HOH . 
G 4 HOH A 57 599 599 HOH HOH . 
G 4 HOH A 58 601 601 HOH HOH . 
G 4 HOH A 59 607 607 HOH HOH . 
G 4 HOH A 60 613 613 HOH HOH . 
G 4 HOH A 61 615 615 HOH HOH . 
G 4 HOH A 62 616 616 HOH HOH . 
G 4 HOH A 63 619 619 HOH HOH . 
G 4 HOH A 64 620 620 HOH HOH . 
G 4 HOH A 65 621 621 HOH HOH . 
G 4 HOH A 66 626 626 HOH HOH . 
G 4 HOH A 67 627 627 HOH HOH . 
G 4 HOH A 68 628 628 HOH HOH . 
G 4 HOH A 69 629 629 HOH HOH . 
G 4 HOH A 70 630 630 HOH HOH . 
G 4 HOH A 71 631 631 HOH HOH . 
G 4 HOH A 72 632 632 HOH HOH . 
G 4 HOH A 73 633 633 HOH HOH . 
G 4 HOH A 74 634 634 HOH HOH . 
G 4 HOH A 75 636 636 HOH HOH . 
G 4 HOH A 76 639 639 HOH HOH . 
G 4 HOH A 77 641 641 HOH HOH . 
G 4 HOH A 78 643 643 HOH HOH . 
G 4 HOH A 79 644 644 HOH HOH . 
G 4 HOH A 80 645 645 HOH HOH . 
G 4 HOH A 81 646 646 HOH HOH . 
G 4 HOH A 82 648 648 HOH HOH . 
G 4 HOH A 83 649 649 HOH HOH . 
G 4 HOH A 84 651 651 HOH HOH . 
G 4 HOH A 85 652 652 HOH HOH . 
G 4 HOH A 86 654 654 HOH HOH . 
G 4 HOH A 87 655 655 HOH HOH . 
G 4 HOH A 88 656 656 HOH HOH . 
G 4 HOH A 89 659 659 HOH HOH . 
G 4 HOH A 90 660 660 HOH HOH . 
G 4 HOH A 91 661 661 HOH HOH . 
H 4 HOH B 1 506 506 HOH HOH . 
H 4 HOH B 2 508 508 HOH HOH . 
H 4 HOH B 3 511 511 HOH HOH . 
H 4 HOH B 4 512 512 HOH HOH . 
H 4 HOH B 5 513 513 HOH HOH . 
H 4 HOH B 6 515 515 HOH HOH . 
H 4 HOH B 7 518 518 HOH HOH . 
H 4 HOH B 8 519 519 HOH HOH . 
H 4 HOH B 9 522 522 HOH HOH . 
H 4 HOH B 10 524 524 HOH HOH . 
H 4 HOH B 11 526 526 HOH HOH . 
H 4 HOH B 12 527 527 HOH HOH . 
H 4 HOH B 13 528 528 HOH HOH . 
H 4 HOH B 14 529 529 HOH HOH . 
H 4 HOH B 15 530 530 HOH HOH . 
H 4 HOH B 16 532 532 HOH HOH . 
H 4 HOH B 17 533 533 HOH HOH . 
H 4 HOH B 18 534 534 HOH HOH . 
H 4 HOH B 19 537 537 HOH HOH . 
H 4 HOH B 20 541 541 HOH HOH . 
H 4 HOH B 21 547 547 HOH HOH . 
H 4 HOH B 22 548 548 HOH HOH . 
H 4 HOH B 23 552 552 HOH HOH . 
H 4 HOH B 24 553 553 HOH HOH . 
H 4 HOH B 25 554 554 HOH HOH . 
H 4 HOH B 26 556 556 HOH HOH . 
H 4 HOH B 27 558 558 HOH HOH . 
H 4 HOH B 28 563 563 HOH HOH . 
H 4 HOH B 29 569 569 HOH HOH . 
H 4 HOH B 30 570 570 HOH HOH . 
H 4 HOH B 31 571 571 HOH HOH . 
H 4 HOH B 32 573 573 HOH HOH . 
H 4 HOH B 33 575 575 HOH HOH . 
H 4 HOH B 34 578 578 HOH HOH . 
H 4 HOH B 35 579 579 HOH HOH . 
H 4 HOH B 36 581 581 HOH HOH . 
H 4 HOH B 37 583 583 HOH HOH . 
H 4 HOH B 38 585 585 HOH HOH . 
H 4 HOH B 39 589 589 HOH HOH . 
H 4 HOH B 40 590 590 HOH HOH . 
H 4 HOH B 41 592 592 HOH HOH . 
H 4 HOH B 42 593 593 HOH HOH . 
H 4 HOH B 43 600 600 HOH HOH . 
H 4 HOH B 44 602 602 HOH HOH . 
H 4 HOH B 45 603 603 HOH HOH . 
H 4 HOH B 46 604 604 HOH HOH . 
H 4 HOH B 47 605 605 HOH HOH . 
H 4 HOH B 48 606 606 HOH HOH . 
H 4 HOH B 49 608 608 HOH HOH . 
H 4 HOH B 50 609 609 HOH HOH . 
H 4 HOH B 51 610 610 HOH HOH . 
H 4 HOH B 52 611 611 HOH HOH . 
H 4 HOH B 53 612 612 HOH HOH . 
H 4 HOH B 54 614 614 HOH HOH . 
H 4 HOH B 55 617 617 HOH HOH . 
H 4 HOH B 56 618 618 HOH HOH . 
H 4 HOH B 57 622 622 HOH HOH . 
H 4 HOH B 58 623 623 HOH HOH . 
H 4 HOH B 59 624 624 HOH HOH . 
H 4 HOH B 60 625 625 HOH HOH . 
H 4 HOH B 61 635 635 HOH HOH . 
H 4 HOH B 62 637 637 HOH HOH . 
H 4 HOH B 63 638 638 HOH HOH . 
H 4 HOH B 64 640 640 HOH HOH . 
H 4 HOH B 65 642 642 HOH HOH . 
H 4 HOH B 66 647 647 HOH HOH . 
H 4 HOH B 67 650 650 HOH HOH . 
H 4 HOH B 68 653 653 HOH HOH . 
H 4 HOH B 69 657 657 HOH HOH . 
H 4 HOH B 70 658 658 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 ID2 . . . F 3 22.285 95.364 44.707 1 6.42 ? C2 ID2 2 B 1 
HETATM 2 C C4 ID2 . . . F 3 22.769 92.982 44.255 1 12.31 ? C4 ID2 2 B 1 
HETATM 3 C C5 ID2 . . . F 3 21.303 92.809 44.147 1 12.56 ? C5 ID2 2 B 1 
HETATM 4 C C6 ID2 . . . F 3 20.425 93.897 44.322 1 12.16 ? C6 ID2 2 B 1 
HETATM 5 O O2 ID2 . . . F 3 22.769 96.456 44.927 1 9.43 ? O2 ID2 2 B 1 
HETATM 6 O O5' ID2 . . . F 3 17.37 94.389 44.31 1 6.9 ? O5' ID2 2 B 1 
HETATM 7 C C5' ID2 . . . F 3 16.969 95.103 45.402 1 3.34 ? C5' ID2 2 B 1 
HETATM 8 C C4' ID2 . . . F 3 17.857 96.292 45.558 1 3.2 ? C4' ID2 2 B 1 
HETATM 9 O O4' ID2 . . . F 3 19.199 95.866 45.81 1 4.69 ? O4' ID2 2 B 1 
HETATM 10 C C1' ID2 . . . F 3 20.065 96.308 44.831 1 5.23 ? C1' ID2 2 B 1 
HETATM 11 N N1 ID2 . . . F 3 20.921 95.175 44.613 1 4.95 ? N1 ID2 2 B 1 
HETATM 12 N N3 ID2 . . . F 3 23.133 94.287 44.544 1 8.88 ? N3 ID2 2 B 1 
HETATM 13 O O4 ID2 . . . F 3 23.658 92.124 44.102 1 15.02 ? O4 ID2 2 B 1 
HETATM 14 I I ID2 . . . F 3 20.569 90.902 43.634 1 21.28 ? I ID2 2 B 1 
HETATM 15 C C2' ID2 . . . F 3 19.099 96.564 43.734 1 3.59 ? C2' ID2 2 B 1 
HETATM 16 C C3' ID2 . . . F 3 17.887 97.126 44.4 1 2 ? C3' ID2 2 B 1 
HETATM 17 O O3' ID2 . . . F 3 18.254 98.372 44.787 1 3.35 ? O3' ID2 2 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#