data_1KIZ # _model_server_result.job_id SnZ04HeGOms2_TxfdvodVA _model_server_result.datetime_utc '2024-11-12 20:52:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":752}' # _entry.id 1KIZ # _exptl.entry_id 1KIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KIZ _cell.length_a 122.723 _cell.length_b 122.723 _cell.length_c 151.01 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASN 225 B ASN 225 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc2 B OG SER 229 B SER 229 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 G O1 POP . B POP 700 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc4 G O4 POP . B POP 700 1_555 E MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 G O5 POP . B POP 700 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc6 G O2 POP . B POP 700 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1KIZ _atom_sites.fract_transf_matrix[1][1] 0.008148 _atom_sites.fract_transf_matrix[1][2] 0.004704 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 750 750 EDO EDO . D 2 EDO A 1 752 752 EDO EDO . E 3 MG B 1 701 701 MG MG . F 3 MG B 1 702 702 MG MG . G 4 POP B 1 700 700 POP POP . H 2 EDO B 1 751 751 EDO EDO . I 2 EDO B 1 753 753 EDO EDO . J 5 HOH A 1 753 1 HOH HOH . J 5 HOH A 2 754 3 HOH HOH . J 5 HOH A 3 755 4 HOH HOH . J 5 HOH A 4 756 6 HOH HOH . J 5 HOH A 5 757 8 HOH HOH . J 5 HOH A 6 758 10 HOH HOH . J 5 HOH A 7 759 14 HOH HOH . J 5 HOH A 8 760 15 HOH HOH . J 5 HOH A 9 761 17 HOH HOH . J 5 HOH A 10 762 19 HOH HOH . J 5 HOH A 11 763 21 HOH HOH . J 5 HOH A 12 764 22 HOH HOH . J 5 HOH A 13 765 23 HOH HOH . J 5 HOH A 14 766 24 HOH HOH . J 5 HOH A 15 767 26 HOH HOH . J 5 HOH A 16 768 28 HOH HOH . J 5 HOH A 17 769 29 HOH HOH . J 5 HOH A 18 770 31 HOH HOH . J 5 HOH A 19 771 32 HOH HOH . J 5 HOH A 20 772 33 HOH HOH . J 5 HOH A 21 773 34 HOH HOH . J 5 HOH A 22 774 36 HOH HOH . J 5 HOH A 23 775 37 HOH HOH . J 5 HOH A 24 776 38 HOH HOH . J 5 HOH A 25 777 40 HOH HOH . J 5 HOH A 26 778 41 HOH HOH . J 5 HOH A 27 779 42 HOH HOH . J 5 HOH A 28 780 43 HOH HOH . J 5 HOH A 29 781 46 HOH HOH . J 5 HOH A 30 782 48 HOH HOH . J 5 HOH A 31 783 49 HOH HOH . J 5 HOH A 32 784 50 HOH HOH . J 5 HOH A 33 785 51 HOH HOH . J 5 HOH A 34 786 53 HOH HOH . J 5 HOH A 35 787 54 HOH HOH . J 5 HOH A 36 788 55 HOH HOH . J 5 HOH A 37 789 56 HOH HOH . J 5 HOH A 38 790 63 HOH HOH . J 5 HOH A 39 791 66 HOH HOH . J 5 HOH A 40 792 67 HOH HOH . J 5 HOH A 41 793 70 HOH HOH . J 5 HOH A 42 794 71 HOH HOH . J 5 HOH A 43 795 72 HOH HOH . J 5 HOH A 44 796 76 HOH HOH . J 5 HOH A 45 797 77 HOH HOH . J 5 HOH A 46 798 78 HOH HOH . J 5 HOH A 47 799 79 HOH HOH . J 5 HOH A 48 800 80 HOH HOH . J 5 HOH A 49 801 85 HOH HOH . J 5 HOH A 50 802 86 HOH HOH . J 5 HOH A 51 803 89 HOH HOH . J 5 HOH A 52 804 92 HOH HOH . J 5 HOH A 53 805 94 HOH HOH . J 5 HOH A 54 806 95 HOH HOH . J 5 HOH A 55 807 97 HOH HOH . J 5 HOH A 56 808 98 HOH HOH . J 5 HOH A 57 809 99 HOH HOH . J 5 HOH A 58 810 100 HOH HOH . J 5 HOH A 59 811 102 HOH HOH . J 5 HOH A 60 812 103 HOH HOH . J 5 HOH A 61 813 104 HOH HOH . J 5 HOH A 62 814 106 HOH HOH . J 5 HOH A 63 815 107 HOH HOH . J 5 HOH A 64 816 108 HOH HOH . J 5 HOH A 65 817 109 HOH HOH . J 5 HOH A 66 818 110 HOH HOH . J 5 HOH A 67 819 112 HOH HOH . J 5 HOH A 68 820 116 HOH HOH . J 5 HOH A 69 821 117 HOH HOH . J 5 HOH A 70 822 120 HOH HOH . J 5 HOH A 71 823 122 HOH HOH . J 5 HOH A 72 824 123 HOH HOH . J 5 HOH A 73 825 124 HOH HOH . J 5 HOH A 74 826 127 HOH HOH . J 5 HOH A 75 827 128 HOH HOH . J 5 HOH A 76 828 129 HOH HOH . J 5 HOH A 77 829 130 HOH HOH . J 5 HOH A 78 830 133 HOH HOH . J 5 HOH A 79 831 134 HOH HOH . J 5 HOH A 80 832 135 HOH HOH . J 5 HOH A 81 833 138 HOH HOH . J 5 HOH A 82 834 139 HOH HOH . J 5 HOH A 83 835 140 HOH HOH . J 5 HOH A 84 836 142 HOH HOH . J 5 HOH A 85 837 143 HOH HOH . J 5 HOH A 86 838 145 HOH HOH . J 5 HOH A 87 839 146 HOH HOH . J 5 HOH A 88 840 147 HOH HOH . J 5 HOH A 89 841 148 HOH HOH . J 5 HOH A 90 842 151 HOH HOH . J 5 HOH A 91 843 152 HOH HOH . J 5 HOH A 92 844 153 HOH HOH . J 5 HOH A 93 845 154 HOH HOH . J 5 HOH A 94 846 155 HOH HOH . J 5 HOH A 95 847 156 HOH HOH . J 5 HOH A 96 848 157 HOH HOH . J 5 HOH A 97 849 159 HOH HOH . J 5 HOH A 98 850 164 HOH HOH . J 5 HOH A 99 851 166 HOH HOH . J 5 HOH A 100 852 167 HOH HOH . J 5 HOH A 101 853 168 HOH HOH . J 5 HOH A 102 854 170 HOH HOH . J 5 HOH A 103 855 171 HOH HOH . J 5 HOH A 104 856 172 HOH HOH . J 5 HOH A 105 857 173 HOH HOH . J 5 HOH A 106 858 176 HOH HOH . J 5 HOH A 107 859 178 HOH HOH . J 5 HOH A 108 860 179 HOH HOH . J 5 HOH A 109 861 181 HOH HOH . J 5 HOH A 110 862 183 HOH HOH . J 5 HOH A 111 863 185 HOH HOH . J 5 HOH A 112 864 187 HOH HOH . J 5 HOH A 113 865 188 HOH HOH . J 5 HOH A 114 866 190 HOH HOH . J 5 HOH A 115 867 191 HOH HOH . J 5 HOH A 116 868 198 HOH HOH . J 5 HOH A 117 869 200 HOH HOH . J 5 HOH A 118 870 203 HOH HOH . J 5 HOH A 119 871 205 HOH HOH . J 5 HOH A 120 872 206 HOH HOH . J 5 HOH A 121 873 207 HOH HOH . J 5 HOH A 122 874 209 HOH HOH . J 5 HOH A 123 875 210 HOH HOH . J 5 HOH A 124 876 213 HOH HOH . J 5 HOH A 125 877 214 HOH HOH . J 5 HOH A 126 878 216 HOH HOH . J 5 HOH A 127 879 217 HOH HOH . J 5 HOH A 128 880 220 HOH HOH . J 5 HOH A 129 881 169 HOH HOH . K 5 HOH B 1 754 2 HOH HOH . K 5 HOH B 2 755 5 HOH HOH . K 5 HOH B 3 756 7 HOH HOH . K 5 HOH B 4 757 9 HOH HOH . K 5 HOH B 5 758 11 HOH HOH . K 5 HOH B 6 759 12 HOH HOH . K 5 HOH B 7 760 13 HOH HOH . K 5 HOH B 8 761 16 HOH HOH . K 5 HOH B 9 762 18 HOH HOH . K 5 HOH B 10 763 20 HOH HOH . K 5 HOH B 11 764 25 HOH HOH . K 5 HOH B 12 765 27 HOH HOH . K 5 HOH B 13 766 30 HOH HOH . K 5 HOH B 14 767 35 HOH HOH . K 5 HOH B 15 768 39 HOH HOH . K 5 HOH B 16 769 44 HOH HOH . K 5 HOH B 17 770 45 HOH HOH . K 5 HOH B 18 771 47 HOH HOH . K 5 HOH B 19 772 52 HOH HOH . K 5 HOH B 20 773 57 HOH HOH . K 5 HOH B 21 774 58 HOH HOH . K 5 HOH B 22 775 59 HOH HOH . K 5 HOH B 23 776 60 HOH HOH . K 5 HOH B 24 777 61 HOH HOH . K 5 HOH B 25 778 62 HOH HOH . K 5 HOH B 26 779 64 HOH HOH . K 5 HOH B 27 780 65 HOH HOH . K 5 HOH B 28 781 68 HOH HOH . K 5 HOH B 29 782 69 HOH HOH . K 5 HOH B 30 783 73 HOH HOH . K 5 HOH B 31 784 74 HOH HOH . K 5 HOH B 32 785 75 HOH HOH . K 5 HOH B 33 786 81 HOH HOH . K 5 HOH B 34 787 82 HOH HOH . K 5 HOH B 35 788 83 HOH HOH . K 5 HOH B 36 789 84 HOH HOH . K 5 HOH B 37 790 87 HOH HOH . K 5 HOH B 38 791 88 HOH HOH . K 5 HOH B 39 792 90 HOH HOH . K 5 HOH B 40 793 91 HOH HOH . K 5 HOH B 41 794 93 HOH HOH . K 5 HOH B 42 795 96 HOH HOH . K 5 HOH B 43 796 101 HOH HOH . K 5 HOH B 44 797 105 HOH HOH . K 5 HOH B 45 798 111 HOH HOH . K 5 HOH B 46 799 113 HOH HOH . K 5 HOH B 47 800 114 HOH HOH . K 5 HOH B 48 801 115 HOH HOH . K 5 HOH B 49 802 118 HOH HOH . K 5 HOH B 50 803 119 HOH HOH . K 5 HOH B 51 804 121 HOH HOH . K 5 HOH B 52 805 125 HOH HOH . K 5 HOH B 53 806 126 HOH HOH . K 5 HOH B 54 807 131 HOH HOH . K 5 HOH B 55 808 132 HOH HOH . K 5 HOH B 56 809 136 HOH HOH . K 5 HOH B 57 810 137 HOH HOH . K 5 HOH B 58 811 141 HOH HOH . K 5 HOH B 59 812 144 HOH HOH . K 5 HOH B 60 813 149 HOH HOH . K 5 HOH B 61 814 150 HOH HOH . K 5 HOH B 62 815 158 HOH HOH . K 5 HOH B 63 816 160 HOH HOH . K 5 HOH B 64 817 161 HOH HOH . K 5 HOH B 65 818 162 HOH HOH . K 5 HOH B 66 819 163 HOH HOH . K 5 HOH B 67 820 165 HOH HOH . K 5 HOH B 68 821 174 HOH HOH . K 5 HOH B 69 822 175 HOH HOH . K 5 HOH B 70 823 177 HOH HOH . K 5 HOH B 71 824 180 HOH HOH . K 5 HOH B 72 825 182 HOH HOH . K 5 HOH B 73 826 184 HOH HOH . K 5 HOH B 74 827 186 HOH HOH . K 5 HOH B 75 828 189 HOH HOH . K 5 HOH B 76 829 192 HOH HOH . K 5 HOH B 77 830 193 HOH HOH . K 5 HOH B 78 831 194 HOH HOH . K 5 HOH B 79 832 195 HOH HOH . K 5 HOH B 80 833 196 HOH HOH . K 5 HOH B 81 834 197 HOH HOH . K 5 HOH B 82 835 199 HOH HOH . K 5 HOH B 83 836 201 HOH HOH . K 5 HOH B 84 837 202 HOH HOH . K 5 HOH B 85 838 204 HOH HOH . K 5 HOH B 86 839 208 HOH HOH . K 5 HOH B 87 840 211 HOH HOH . K 5 HOH B 88 841 212 HOH HOH . K 5 HOH B 89 842 215 HOH HOH . K 5 HOH B 90 843 218 HOH HOH . K 5 HOH B 91 844 219 HOH HOH . K 5 HOH B 92 845 221 HOH HOH . K 5 HOH B 93 846 222 HOH HOH . K 5 HOH B 94 847 223 HOH HOH . K 5 HOH B 95 848 224 HOH HOH . K 5 HOH B 96 849 225 HOH HOH . K 5 HOH B 97 850 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -7.315 92.615 36.167 1 35.94 ? C1 EDO 752 A 1 HETATM 2 O O1 EDO . . . D 2 -6.113 92.623 37.125 1 38.06 ? O1 EDO 752 A 1 HETATM 3 C C2 EDO . . . D 2 -7.675 91.222 35.621 1 37.96 ? C2 EDO 752 A 1 HETATM 4 O O2 EDO . . . D 2 -8.539 90.462 36.706 1 39.05 ? O2 EDO 752 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #