data_1KJ1
#
_model_server_result.job_id            p5IEqHG2rDgyB43vfJ7ySA 
_model_server_result.datetime_utc      '2025-07-01 12:34:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kj1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":305}' 
#
_entry.id    1KJ1 
#
_exptl.entry_id    1KJ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.26 
_cell.angle_gamma         90 
_cell.entry_id            1KJ1 
_cell.length_a            201.831 
_cell.length_b            43.516 
_cell.length_c            78.736 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KJ1 
_symmetry.cell_setting             monoclinic 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,S,T 1 1 
C,D,L,M,N,O,P,Q,R,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 29 1_555 A SG CYS 53 A CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 29 D CYS 29 1_555 B SG CYS 53 D CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 C SG CYS 29 P CYS 29 1_555 C SG CYS 53 P CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 D SG CYS 29 Q CYS 29 1_555 D SG CYS 53 Q CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 218 n n 
C1 O1 MAN sing 219 n n 
C1 O5 MAN sing 220 n n 
C1 H1 MAN sing 221 n n 
C2 C3 MAN sing 222 n n 
C2 O2 MAN sing 223 n n 
C2 H2 MAN sing 224 n n 
C3 C4 MAN sing 225 n n 
C3 O3 MAN sing 226 n n 
C3 H3 MAN sing 227 n n 
C4 C5 MAN sing 228 n n 
C4 O4 MAN sing 229 n n 
C4 H4 MAN sing 230 n n 
C5 C6 MAN sing 231 n n 
C5 O5 MAN sing 232 n n 
C5 H5 MAN sing 233 n n 
C6 O6 MAN sing 234 n n 
C6 H61 MAN sing 235 n n 
C6 H62 MAN sing 236 n n 
O1 HO1 MAN sing 237 n n 
O2 HO2 MAN sing 238 n n 
O3 HO3 MAN sing 239 n n 
O4 HO4 MAN sing 240 n n 
O6 HO6 MAN sing 241 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1KJ1 
_atom_sites.fract_transf_matrix[1][1]    0.004955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002028 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02298 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013723 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MAN A 1 300 300 MAN MAN . 
F 3 MAN A 1 301 301 MAN MAN . 
G 3 MAN A 1 302 302 MAN MAN . 
H 3 MAN A 1 303 303 MAN MAN . 
I 3 MAN D 1 304 304 MAN MAN . 
J 3 MAN D 1 305 305 MAN MAN . 
K 3 MAN D 1 306 306 MAN MAN . 
L 3 MAN P 1 307 307 MAN MAN . 
M 3 MAN P 1 308 308 MAN MAN . 
N 3 MAN P 1 309 309 MAN MAN . 
O 3 MAN P 1 310 310 MAN MAN . 
P 3 MAN Q 1 311 311 MAN MAN . 
Q 3 MAN Q 1 312 312 MAN MAN . 
R 3 MAN Q 1 313 313 MAN MAN . 
S 4 HOH A 1 402 402 HOH HOH . 
S 4 HOH A 2 406 406 HOH HOH . 
S 4 HOH A 3 409 409 HOH HOH . 
S 4 HOH A 4 413 413 HOH HOH . 
S 4 HOH A 5 419 419 HOH HOH . 
S 4 HOH A 6 420 420 HOH HOH . 
S 4 HOH A 7 421 421 HOH HOH . 
S 4 HOH A 8 422 422 HOH HOH . 
S 4 HOH A 9 423 423 HOH HOH . 
S 4 HOH A 10 424 424 HOH HOH . 
S 4 HOH A 11 427 427 HOH HOH . 
S 4 HOH A 12 432 432 HOH HOH . 
S 4 HOH A 13 442 442 HOH HOH . 
S 4 HOH A 14 446 446 HOH HOH . 
S 4 HOH A 15 447 447 HOH HOH . 
S 4 HOH A 16 448 448 HOH HOH . 
S 4 HOH A 17 460 460 HOH HOH . 
S 4 HOH A 18 467 467 HOH HOH . 
S 4 HOH A 19 468 468 HOH HOH . 
S 4 HOH A 20 469 469 HOH HOH . 
S 4 HOH A 21 472 472 HOH HOH . 
S 4 HOH A 22 480 480 HOH HOH . 
S 4 HOH A 23 485 485 HOH HOH . 
S 4 HOH A 24 491 491 HOH HOH . 
S 4 HOH A 25 492 492 HOH HOH . 
S 4 HOH A 26 499 499 HOH HOH . 
S 4 HOH A 27 501 501 HOH HOH . 
S 4 HOH A 28 505 505 HOH HOH . 
S 4 HOH A 29 509 509 HOH HOH . 
S 4 HOH A 30 512 512 HOH HOH . 
S 4 HOH A 31 513 513 HOH HOH . 
S 4 HOH A 32 515 515 HOH HOH . 
S 4 HOH A 33 521 521 HOH HOH . 
S 4 HOH A 34 522 522 HOH HOH . 
S 4 HOH A 35 523 523 HOH HOH . 
S 4 HOH A 36 524 524 HOH HOH . 
S 4 HOH A 37 525 525 HOH HOH . 
S 4 HOH A 38 531 531 HOH HOH . 
S 4 HOH A 39 532 532 HOH HOH . 
S 4 HOH A 40 535 535 HOH HOH . 
S 4 HOH A 41 536 536 HOH HOH . 
S 4 HOH A 42 537 537 HOH HOH . 
S 4 HOH A 43 546 546 HOH HOH . 
S 4 HOH A 44 551 551 HOH HOH . 
S 4 HOH A 45 554 554 HOH HOH . 
S 4 HOH A 46 555 555 HOH HOH . 
S 4 HOH A 47 565 565 HOH HOH . 
S 4 HOH A 48 566 566 HOH HOH . 
S 4 HOH A 49 569 569 HOH HOH . 
S 4 HOH A 50 570 570 HOH HOH . 
S 4 HOH A 51 571 571 HOH HOH . 
S 4 HOH A 52 574 574 HOH HOH . 
T 4 HOH D 1 407 407 HOH HOH . 
T 4 HOH D 2 412 412 HOH HOH . 
T 4 HOH D 3 418 418 HOH HOH . 
T 4 HOH D 4 426 426 HOH HOH . 
T 4 HOH D 5 428 428 HOH HOH . 
T 4 HOH D 6 430 430 HOH HOH . 
T 4 HOH D 7 433 433 HOH HOH . 
T 4 HOH D 8 439 439 HOH HOH . 
T 4 HOH D 9 450 450 HOH HOH . 
T 4 HOH D 10 463 463 HOH HOH . 
T 4 HOH D 11 470 470 HOH HOH . 
T 4 HOH D 12 478 478 HOH HOH . 
T 4 HOH D 13 482 482 HOH HOH . 
T 4 HOH D 14 489 489 HOH HOH . 
T 4 HOH D 15 494 494 HOH HOH . 
T 4 HOH D 16 498 498 HOH HOH . 
T 4 HOH D 17 502 502 HOH HOH . 
T 4 HOH D 18 504 504 HOH HOH . 
T 4 HOH D 19 511 511 HOH HOH . 
T 4 HOH D 20 514 514 HOH HOH . 
T 4 HOH D 21 517 517 HOH HOH . 
T 4 HOH D 22 518 518 HOH HOH . 
T 4 HOH D 23 526 526 HOH HOH . 
T 4 HOH D 24 528 528 HOH HOH . 
T 4 HOH D 25 530 530 HOH HOH . 
T 4 HOH D 26 533 533 HOH HOH . 
T 4 HOH D 27 540 540 HOH HOH . 
T 4 HOH D 28 549 549 HOH HOH . 
T 4 HOH D 29 563 563 HOH HOH . 
T 4 HOH D 30 567 567 HOH HOH . 
T 4 HOH D 31 568 568 HOH HOH . 
T 4 HOH D 32 572 572 HOH HOH . 
U 4 HOH P 1 404 404 HOH HOH . 
U 4 HOH P 2 405 405 HOH HOH . 
U 4 HOH P 3 434 434 HOH HOH . 
U 4 HOH P 4 435 435 HOH HOH . 
U 4 HOH P 5 437 437 HOH HOH . 
U 4 HOH P 6 438 438 HOH HOH . 
U 4 HOH P 7 444 444 HOH HOH . 
U 4 HOH P 8 452 452 HOH HOH . 
U 4 HOH P 9 455 455 HOH HOH . 
U 4 HOH P 10 458 458 HOH HOH . 
U 4 HOH P 11 459 459 HOH HOH . 
U 4 HOH P 12 465 465 HOH HOH . 
U 4 HOH P 13 471 471 HOH HOH . 
U 4 HOH P 14 473 473 HOH HOH . 
U 4 HOH P 15 474 474 HOH HOH . 
U 4 HOH P 16 475 475 HOH HOH . 
U 4 HOH P 17 479 479 HOH HOH . 
U 4 HOH P 18 484 484 HOH HOH . 
U 4 HOH P 19 487 487 HOH HOH . 
U 4 HOH P 20 493 493 HOH HOH . 
U 4 HOH P 21 495 495 HOH HOH . 
U 4 HOH P 22 506 506 HOH HOH . 
U 4 HOH P 23 507 507 HOH HOH . 
U 4 HOH P 24 508 508 HOH HOH . 
U 4 HOH P 25 519 519 HOH HOH . 
U 4 HOH P 26 520 520 HOH HOH . 
U 4 HOH P 27 529 529 HOH HOH . 
U 4 HOH P 28 534 534 HOH HOH . 
U 4 HOH P 29 538 538 HOH HOH . 
U 4 HOH P 30 539 539 HOH HOH . 
U 4 HOH P 31 541 541 HOH HOH . 
U 4 HOH P 32 542 542 HOH HOH . 
U 4 HOH P 33 545 545 HOH HOH . 
U 4 HOH P 34 550 550 HOH HOH . 
U 4 HOH P 35 556 556 HOH HOH . 
U 4 HOH P 36 557 557 HOH HOH . 
U 4 HOH P 37 560 560 HOH HOH . 
U 4 HOH P 38 564 564 HOH HOH . 
V 4 HOH Q 1 400 400 HOH HOH . 
V 4 HOH Q 2 401 401 HOH HOH . 
V 4 HOH Q 3 403 403 HOH HOH . 
V 4 HOH Q 4 408 408 HOH HOH . 
V 4 HOH Q 5 410 410 HOH HOH . 
V 4 HOH Q 6 411 411 HOH HOH . 
V 4 HOH Q 7 414 414 HOH HOH . 
V 4 HOH Q 8 415 415 HOH HOH . 
V 4 HOH Q 9 416 416 HOH HOH . 
V 4 HOH Q 10 417 417 HOH HOH . 
V 4 HOH Q 11 425 425 HOH HOH . 
V 4 HOH Q 12 429 429 HOH HOH . 
V 4 HOH Q 13 431 431 HOH HOH . 
V 4 HOH Q 14 436 436 HOH HOH . 
V 4 HOH Q 15 440 440 HOH HOH . 
V 4 HOH Q 16 441 441 HOH HOH . 
V 4 HOH Q 17 443 443 HOH HOH . 
V 4 HOH Q 18 445 445 HOH HOH . 
V 4 HOH Q 19 449 449 HOH HOH . 
V 4 HOH Q 20 451 451 HOH HOH . 
V 4 HOH Q 21 453 453 HOH HOH . 
V 4 HOH Q 22 454 454 HOH HOH . 
V 4 HOH Q 23 456 456 HOH HOH . 
V 4 HOH Q 24 457 457 HOH HOH . 
V 4 HOH Q 25 461 461 HOH HOH . 
V 4 HOH Q 26 462 462 HOH HOH . 
V 4 HOH Q 27 464 464 HOH HOH . 
V 4 HOH Q 28 466 466 HOH HOH . 
V 4 HOH Q 29 476 476 HOH HOH . 
V 4 HOH Q 30 477 477 HOH HOH . 
V 4 HOH Q 31 481 481 HOH HOH . 
V 4 HOH Q 32 483 483 HOH HOH . 
V 4 HOH Q 33 486 486 HOH HOH . 
V 4 HOH Q 34 488 488 HOH HOH . 
V 4 HOH Q 35 490 490 HOH HOH . 
V 4 HOH Q 36 496 496 HOH HOH . 
V 4 HOH Q 37 497 497 HOH HOH . 
V 4 HOH Q 38 500 500 HOH HOH . 
V 4 HOH Q 39 503 503 HOH HOH . 
V 4 HOH Q 40 510 510 HOH HOH . 
V 4 HOH Q 41 516 516 HOH HOH . 
V 4 HOH Q 42 527 527 HOH HOH . 
V 4 HOH Q 43 543 543 HOH HOH . 
V 4 HOH Q 44 544 544 HOH HOH . 
V 4 HOH Q 45 547 547 HOH HOH . 
V 4 HOH Q 46 548 548 HOH HOH . 
V 4 HOH Q 47 552 552 HOH HOH . 
V 4 HOH Q 48 553 553 HOH HOH . 
V 4 HOH Q 49 558 558 HOH HOH . 
V 4 HOH Q 50 559 559 HOH HOH . 
V 4 HOH Q 51 561 561 HOH HOH . 
V 4 HOH Q 52 562 562 HOH HOH . 
V 4 HOH Q 53 573 573 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . J 3 58.167 -10.566 16.321 1 63.68 ? C1 MAN 305 D 1 
HETATM 2 C C2 MAN . . . J 3 58.409 -9.487 17.384 1 62.88 ? C2 MAN 305 D 1 
HETATM 3 C C3 MAN . . . J 3 57.29 -8.438 17.333 1 62.38 ? C3 MAN 305 D 1 
HETATM 4 C C4 MAN . . . J 3 57.183 -7.872 15.92 1 61.57 ? C4 MAN 305 D 1 
HETATM 5 C C5 MAN . . . J 3 56.971 -9.009 14.917 1 62.08 ? C5 MAN 305 D 1 
HETATM 6 C C6 MAN . . . J 3 56.951 -8.504 13.487 1 62.95 ? C6 MAN 305 D 1 
HETATM 7 O O1 MAN . . . J 3 56.996 -11.252 16.603 1 64.44 ? O1 MAN 305 D 1 
HETATM 8 O O2 MAN . . . J 3 59.664 -8.861 17.15 1 63.91 ? O2 MAN 305 D 1 
HETATM 9 O O3 MAN . . . J 3 57.568 -7.388 18.252 1 60.78 ? O3 MAN 305 D 1 
HETATM 10 O O4 MAN . . . J 3 56.1 -6.96 15.85 1 60.46 ? O4 MAN 305 D 1 
HETATM 11 O O5 MAN . . . J 3 58.048 -9.973 15.012 1 62.82 ? O5 MAN 305 D 1 
HETATM 12 O O6 MAN . . . J 3 56.433 -9.487 12.603 1 63.86 ? O6 MAN 305 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#