data_1KJF # _model_server_result.job_id UCDQGti1sOwAM9aL5EM_wQ _model_server_result.datetime_utc '2024-11-24 16:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":504}' # _entry.id 1KJF # _exptl.entry_id 1KJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KJF _cell.length_a 51.285 _cell.length_b 59.071 _cell.length_c 61.813 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 1KJF _atom_sites.fract_transf_matrix[1][1] 0.019499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016929 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ACT A 1 504 504 ACT ACT . E 3 ACT B 1 501 501 ACT ACT . F 3 ACT B 1 502 502 ACT ACT . G 3 ACT B 1 503 503 ACT ACT . H 4 HOH A 1 505 4 HOH WAT . H 4 HOH A 2 506 7 HOH WAT . H 4 HOH A 3 507 10 HOH WAT . H 4 HOH A 4 508 11 HOH WAT . H 4 HOH A 5 509 14 HOH WAT . H 4 HOH A 6 510 15 HOH WAT . H 4 HOH A 7 511 17 HOH WAT . H 4 HOH A 8 512 18 HOH WAT . H 4 HOH A 9 513 20 HOH WAT . H 4 HOH A 10 514 22 HOH WAT . H 4 HOH A 11 515 24 HOH WAT . H 4 HOH A 12 516 23 HOH WAT . H 4 HOH A 13 517 30 HOH WAT . H 4 HOH A 14 518 35 HOH WAT . H 4 HOH A 15 519 42 HOH WAT . H 4 HOH A 16 520 43 HOH WAT . H 4 HOH A 17 521 46 HOH WAT . H 4 HOH A 18 522 47 HOH WAT . H 4 HOH A 19 523 58 HOH WAT . H 4 HOH A 20 524 120 HOH WAT . H 4 HOH A 21 525 103 HOH WAT . H 4 HOH A 22 526 105 HOH WAT . H 4 HOH A 23 527 109 HOH WAT . H 4 HOH A 24 528 112 HOH WAT . H 4 HOH A 25 529 114 HOH WAT . H 4 HOH A 26 530 115 HOH WAT . H 4 HOH A 27 531 118 HOH WAT . H 4 HOH A 28 532 123 HOH WAT . H 4 HOH A 29 533 126 HOH WAT . H 4 HOH A 30 534 127 HOH WAT . H 4 HOH A 31 535 128 HOH WAT . H 4 HOH A 32 536 129 HOH WAT . H 4 HOH A 33 537 134 HOH WAT . H 4 HOH A 34 538 135 HOH WAT . H 4 HOH A 35 539 143 HOH WAT . H 4 HOH A 36 540 145 HOH WAT . H 4 HOH A 37 541 146 HOH WAT . H 4 HOH A 38 542 150 HOH WAT . H 4 HOH A 39 543 155 HOH WAT . H 4 HOH A 40 544 158 HOH WAT . H 4 HOH A 41 545 160 HOH WAT . H 4 HOH A 42 546 161 HOH WAT . H 4 HOH A 43 547 171 HOH WAT . H 4 HOH A 44 548 172 HOH WAT . H 4 HOH A 45 549 183 HOH WAT . H 4 HOH A 46 550 198 HOH WAT . I 4 HOH B 1 504 1 HOH WAT . I 4 HOH B 2 505 2 HOH WAT . I 4 HOH B 3 506 5 HOH WAT . I 4 HOH B 4 507 6 HOH WAT . I 4 HOH B 5 508 8 HOH WAT . I 4 HOH B 6 509 12 HOH WAT . I 4 HOH B 7 510 13 HOH WAT . I 4 HOH B 8 511 16 HOH WAT . I 4 HOH B 9 512 19 HOH WAT . I 4 HOH B 10 513 25 HOH WAT . I 4 HOH B 11 514 26 HOH WAT . I 4 HOH B 12 515 28 HOH WAT . I 4 HOH B 13 516 31 HOH WAT . I 4 HOH B 14 517 32 HOH WAT . I 4 HOH B 15 518 36 HOH WAT . I 4 HOH B 16 519 45 HOH WAT . I 4 HOH B 17 520 50 HOH WAT . I 4 HOH B 18 521 52 HOH WAT . I 4 HOH B 19 522 53 HOH WAT . I 4 HOH B 20 523 54 HOH WAT . I 4 HOH B 21 524 55 HOH WAT . I 4 HOH B 22 525 56 HOH WAT . I 4 HOH B 23 526 62 HOH WAT . I 4 HOH B 24 527 64 HOH WAT . I 4 HOH B 25 528 67 HOH WAT . I 4 HOH B 26 529 68 HOH WAT . I 4 HOH B 27 530 70 HOH WAT . I 4 HOH B 28 531 75 HOH WAT . I 4 HOH B 29 532 76 HOH WAT . I 4 HOH B 30 533 77 HOH WAT . I 4 HOH B 31 534 78 HOH WAT . I 4 HOH B 32 535 81 HOH WAT . I 4 HOH B 33 536 89 HOH WAT . I 4 HOH B 34 537 101 HOH WAT . I 4 HOH B 35 538 106 HOH WAT . I 4 HOH B 36 539 131 HOH WAT . I 4 HOH B 37 540 140 HOH WAT . I 4 HOH B 38 541 147 HOH WAT . I 4 HOH B 39 542 156 HOH WAT . I 4 HOH B 40 543 159 HOH WAT . I 4 HOH B 41 544 162 HOH WAT . I 4 HOH B 42 545 164 HOH WAT . I 4 HOH B 43 546 165 HOH WAT . I 4 HOH B 44 547 168 HOH WAT . I 4 HOH B 45 548 169 HOH WAT . I 4 HOH B 46 549 173 HOH WAT . I 4 HOH B 47 550 189 HOH WAT . I 4 HOH B 48 551 194 HOH WAT . I 4 HOH B 49 552 196 HOH WAT . I 4 HOH B 50 553 197 HOH WAT . J 4 HOH P 1 11 3 HOH WAT . J 4 HOH P 2 12 51 HOH WAT . J 4 HOH P 3 13 142 HOH WAT . J 4 HOH P 4 14 144 HOH WAT . J 4 HOH P 5 15 195 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 3 6.051 13.243 11.535 1 62.24 ? C ACT 504 A 1 HETATM 2 O O ACT . . . D 3 6.739 14.011 10.541 1 63.54 ? O ACT 504 A 1 HETATM 3 O OXT ACT . . . D 3 4.727 13.389 11.593 1 61.73 ? OXT ACT 504 A 1 HETATM 4 C CH3 ACT . . . D 3 6.813 12.603 12.682 1 63.4 ? CH3 ACT 504 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #