data_1KJO # _model_server_result.job_id sIs6s1i5AX-PfBjgRdvcaw _model_server_result.datetime_utc '2024-11-24 08:56:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":317}' # _entry.id 1KJO # _exptl.entry_id 1KJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.593 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl chlorocarbonate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KJO _cell.length_a 93.732 _cell.length_b 93.732 _cell.length_c 131.581 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 PHQ . A PHQ 317 1_555 H N THR . A THR 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.284 ? metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc9 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc12 A O ASN 183 A ASN 183 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc13 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc14 A OD2 ASP 185 A ASP 185 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc15 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc16 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc17 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc19 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc20 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc21 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc22 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc23 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc24 B CA CA . A CA 401 1_555 I O HOH . A HOH 1320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc25 C CA CA . A CA 402 1_555 I O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc26 C CA CA . A CA 402 1_555 I O HOH . A HOH 1345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc27 D CA CA . A CA 403 1_555 I O HOH . A HOH 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc28 D CA CA . A CA 403 1_555 I O HOH . A HOH 1331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc29 D CA CA . A CA 403 1_555 I O HOH . A HOH 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc30 E CA CA . A CA 404 1_555 I O HOH . A HOH 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc31 E CA CA . A CA 404 1_555 I O HOH . A HOH 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc32 F ZN ZN . A ZN 405 1_555 H O THR . A THR 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc33 F ZN ZN . A ZN 405 1_555 H OXT THR . A THR 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? # _chem_comp.formula 'C8 H7 Cl O2' _chem_comp.formula_weight 170.593 _chem_comp.id PHQ _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl chlorocarbonate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PHQ doub 247 n n C1 O2 PHQ sing 248 n n C1 CL1 PHQ sing 249 n n O2 C2 PHQ sing 250 n n C2 C3 PHQ sing 251 n n C2 H21 PHQ sing 252 n n C2 H22 PHQ sing 253 n n C3 C4 PHQ doub 254 n y C3 C8 PHQ sing 255 n y C4 C5 PHQ sing 256 n y C4 H41 PHQ sing 257 n n C5 C6 PHQ doub 258 n y C5 H51 PHQ sing 259 n n C6 C7 PHQ sing 260 n y C6 H61 PHQ sing 261 n n C7 C8 PHQ doub 262 n y C7 H71 PHQ sing 263 n n C8 H81 PHQ sing 264 n n # _atom_sites.entry_id 1KJO _atom_sites.fract_transf_matrix[1][1] 0.010669 _atom_sites.fract_transf_matrix[1][2] 0.00616 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 2 CA A 1 404 404 CA CA . F 3 ZN A 1 405 405 ZN ZN . G 4 PHQ A 1 317 317 PHQ LTH . H 5 THR A 1 1317 317 THR LTH . I 6 HOH A 1 1318 1 HOH TIP . I 6 HOH A 2 1319 2 HOH TIP . I 6 HOH A 3 1320 3 HOH TIP . I 6 HOH A 4 1321 4 HOH TIP . I 6 HOH A 5 1322 5 HOH TIP . I 6 HOH A 6 1323 6 HOH TIP . I 6 HOH A 7 1324 7 HOH TIP . I 6 HOH A 8 1325 8 HOH TIP . I 6 HOH A 9 1326 9 HOH TIP . I 6 HOH A 10 1327 10 HOH TIP . I 6 HOH A 11 1328 11 HOH TIP . I 6 HOH A 12 1329 12 HOH TIP . I 6 HOH A 13 1330 13 HOH TIP . I 6 HOH A 14 1331 14 HOH TIP . I 6 HOH A 15 1332 15 HOH TIP . I 6 HOH A 16 1333 16 HOH TIP . I 6 HOH A 17 1334 17 HOH TIP . I 6 HOH A 18 1335 18 HOH TIP . I 6 HOH A 19 1336 19 HOH TIP . I 6 HOH A 20 1337 20 HOH TIP . I 6 HOH A 21 1338 21 HOH TIP . I 6 HOH A 22 1339 22 HOH TIP . I 6 HOH A 23 1340 23 HOH TIP . I 6 HOH A 24 1341 24 HOH TIP . I 6 HOH A 25 1342 25 HOH TIP . I 6 HOH A 26 1343 26 HOH TIP . I 6 HOH A 27 1344 27 HOH TIP . I 6 HOH A 28 1345 28 HOH TIP . I 6 HOH A 29 1346 29 HOH TIP . I 6 HOH A 30 1347 30 HOH TIP . I 6 HOH A 31 1348 31 HOH TIP . I 6 HOH A 32 1349 32 HOH TIP . I 6 HOH A 33 1350 33 HOH TIP . I 6 HOH A 34 1351 34 HOH TIP . I 6 HOH A 35 1352 35 HOH TIP . I 6 HOH A 36 1353 36 HOH TIP . I 6 HOH A 37 1354 37 HOH TIP . I 6 HOH A 38 1355 38 HOH TIP . I 6 HOH A 39 1356 39 HOH TIP . I 6 HOH A 40 1357 40 HOH TIP . I 6 HOH A 41 1358 41 HOH TIP . I 6 HOH A 42 1359 42 HOH TIP . I 6 HOH A 43 1360 43 HOH TIP . I 6 HOH A 44 1361 44 HOH TIP . I 6 HOH A 45 1362 45 HOH TIP . I 6 HOH A 46 1363 46 HOH TIP . I 6 HOH A 47 1364 47 HOH TIP . I 6 HOH A 48 1365 48 HOH TIP . I 6 HOH A 49 1366 49 HOH TIP . I 6 HOH A 50 1367 50 HOH TIP . I 6 HOH A 51 1368 51 HOH TIP . I 6 HOH A 52 1369 52 HOH TIP . I 6 HOH A 53 1370 53 HOH TIP . I 6 HOH A 54 1371 54 HOH TIP . I 6 HOH A 55 1372 55 HOH TIP . I 6 HOH A 56 1373 56 HOH TIP . I 6 HOH A 57 1374 57 HOH TIP . I 6 HOH A 58 1375 58 HOH TIP . I 6 HOH A 59 1376 59 HOH TIP . I 6 HOH A 60 1377 60 HOH TIP . I 6 HOH A 61 1378 62 HOH TIP . I 6 HOH A 62 1379 63 HOH TIP . I 6 HOH A 63 1380 64 HOH TIP . I 6 HOH A 64 1381 65 HOH TIP . I 6 HOH A 65 1382 67 HOH TIP . I 6 HOH A 66 1383 68 HOH TIP . I 6 HOH A 67 1384 69 HOH TIP . I 6 HOH A 68 1385 70 HOH TIP . I 6 HOH A 69 1386 71 HOH TIP . I 6 HOH A 70 1387 73 HOH TIP . I 6 HOH A 71 1388 74 HOH TIP . I 6 HOH A 72 1389 76 HOH TIP . I 6 HOH A 73 1390 78 HOH TIP . I 6 HOH A 74 1391 79 HOH TIP . I 6 HOH A 75 1392 80 HOH TIP . I 6 HOH A 76 1393 83 HOH TIP . I 6 HOH A 77 1394 84 HOH TIP . I 6 HOH A 78 1395 85 HOH TIP . I 6 HOH A 79 1396 86 HOH TIP . I 6 HOH A 80 1397 87 HOH TIP . I 6 HOH A 81 1398 88 HOH TIP . I 6 HOH A 82 1399 90 HOH TIP . I 6 HOH A 83 1400 91 HOH TIP . I 6 HOH A 84 1401 92 HOH TIP . I 6 HOH A 85 1402 93 HOH TIP . I 6 HOH A 86 1403 94 HOH TIP . I 6 HOH A 87 1404 95 HOH TIP . I 6 HOH A 88 1405 96 HOH TIP . I 6 HOH A 89 1406 98 HOH TIP . I 6 HOH A 90 1407 101 HOH TIP . I 6 HOH A 91 1408 104 HOH TIP . I 6 HOH A 92 1409 107 HOH TIP . I 6 HOH A 93 1410 108 HOH TIP . I 6 HOH A 94 1411 109 HOH TIP . I 6 HOH A 95 1412 110 HOH TIP . I 6 HOH A 96 1413 111 HOH TIP . I 6 HOH A 97 1414 112 HOH TIP . I 6 HOH A 98 1415 113 HOH TIP . I 6 HOH A 99 1416 114 HOH TIP . I 6 HOH A 100 1417 115 HOH TIP . I 6 HOH A 101 1418 117 HOH TIP . I 6 HOH A 102 1419 118 HOH TIP . I 6 HOH A 103 1420 120 HOH TIP . I 6 HOH A 104 1421 121 HOH TIP . I 6 HOH A 105 1422 122 HOH TIP . I 6 HOH A 106 1423 124 HOH TIP . I 6 HOH A 107 1424 125 HOH TIP . I 6 HOH A 108 1425 126 HOH TIP . I 6 HOH A 109 1426 127 HOH TIP . I 6 HOH A 110 1427 128 HOH TIP . I 6 HOH A 111 1428 129 HOH TIP . I 6 HOH A 112 1429 130 HOH TIP . I 6 HOH A 113 1430 131 HOH TIP . I 6 HOH A 114 1431 133 HOH TIP . I 6 HOH A 115 1432 134 HOH TIP . I 6 HOH A 116 1433 135 HOH TIP . I 6 HOH A 117 1434 137 HOH TIP . I 6 HOH A 118 1435 138 HOH TIP . I 6 HOH A 119 1436 139 HOH TIP . I 6 HOH A 120 1437 140 HOH TIP . I 6 HOH A 121 1438 142 HOH TIP . I 6 HOH A 122 1439 144 HOH TIP . I 6 HOH A 123 1440 145 HOH TIP . I 6 HOH A 124 1441 146 HOH TIP . I 6 HOH A 125 1442 147 HOH TIP . I 6 HOH A 126 1443 148 HOH TIP . I 6 HOH A 127 1444 149 HOH TIP . I 6 HOH A 128 1445 151 HOH TIP . I 6 HOH A 129 1446 152 HOH TIP . I 6 HOH A 130 1447 153 HOH TIP . I 6 HOH A 131 1448 155 HOH TIP . I 6 HOH A 132 1449 156 HOH TIP . I 6 HOH A 133 1450 157 HOH TIP . I 6 HOH A 134 1451 158 HOH TIP . I 6 HOH A 135 1452 159 HOH TIP . I 6 HOH A 136 1453 162 HOH TIP . I 6 HOH A 137 1454 164 HOH TIP . I 6 HOH A 138 1455 165 HOH TIP . I 6 HOH A 139 1456 166 HOH TIP . I 6 HOH A 140 1457 167 HOH TIP . I 6 HOH A 141 1458 171 HOH TIP . I 6 HOH A 142 1459 172 HOH TIP . I 6 HOH A 143 1460 173 HOH TIP . I 6 HOH A 144 1461 175 HOH TIP . I 6 HOH A 145 1462 176 HOH TIP . I 6 HOH A 146 1463 177 HOH TIP . I 6 HOH A 147 1464 179 HOH TIP . I 6 HOH A 148 1465 180 HOH TIP . I 6 HOH A 149 1466 181 HOH TIP . I 6 HOH A 150 1467 182 HOH TIP . I 6 HOH A 151 1468 183 HOH TIP . I 6 HOH A 152 1469 185 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PHQ . . . G 4 35.815 40.524 62.302 1 15.52 ? C1 PHQ 317 A 1 HETATM 2 O O1 PHQ . . . G 4 37.05 40.456 62.209 1 17.07 ? O1 PHQ 317 A 1 HETATM 3 O O2 PHQ . . . G 4 35.198 40.521 63.538 1 15.59 ? O2 PHQ 317 A 1 HETATM 4 C C2 PHQ . . . G 4 35.982 40.459 64.742 1 17.39 ? C2 PHQ 317 A 1 HETATM 5 C C3 PHQ . . . G 4 36.608 41.856 64.948 1 16.82 ? C3 PHQ 317 A 1 HETATM 6 C C4 PHQ . . . G 4 37.837 41.963 65.628 1 18.96 ? C4 PHQ 317 A 1 HETATM 7 C C5 PHQ . . . G 4 38.467 43.227 65.747 1 20.42 ? C5 PHQ 317 A 1 HETATM 8 C C6 PHQ . . . G 4 37.867 44.385 65.185 1 20.02 ? C6 PHQ 317 A 1 HETATM 9 C C7 PHQ . . . G 4 36.633 44.285 64.507 1 19.41 ? C7 PHQ 317 A 1 HETATM 10 C C8 PHQ . . . G 4 36 43.028 64.389 1 18.4 ? C8 PHQ 317 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #