data_1KK8 # _model_server_result.job_id wH5ibQCQ-xPVsPTJqHzgfw _model_server_result.datetime_utc '2024-11-17 03:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":999}' # _entry.id 1KK8 # _exptl.entry_id 1KK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.08 _cell.angle_beta 84.94 _cell.angle_gamma 67.24 _cell.entry_id 1KK8 _cell.length_a 51.604 _cell.length_b 58.527 _cell.length_c 133.295 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 183 A THR 183 1_555 D MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A OG SER 241 A SER 241 1_555 D MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 E BE BEF . A BEF 995 1_555 F O3B ADP . A ADP 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.568 ? metalc ? metalc4 E F3 BEF . A BEF 995 1_555 D MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc5 F O2B ADP . A ADP 996 1_555 D MG MG . A MG 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 D MG MG . A MG 997 1_555 J O HOH . A HOH 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc7 D MG MG . A MG 997 1_555 J O HOH . A HOH 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc8 B OD1 ASP 16 B ASP 28 1_555 H MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc9 B OD2 ASP 18 B ASP 30 1_555 H MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc10 B OD1 ASP 18 B ASP 30 1_555 H MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc11 B OD1 ASP 20 B ASP 32 1_555 H MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc12 B O PHE 22 B PHE 34 1_555 H MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.84 ? metalc ? metalc13 B OD1 ASP 27 B ASP 39 1_555 H MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc14 B OD2 ASP 27 B ASP 39 1_555 H MG MG . B MG 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc15 C O ASP 19 C ASP 19 1_555 I CA CA . C CA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc16 C OD1 ASP 19 C ASP 19 1_555 I CA CA . C CA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc17 C OD1 ASP 22 C ASP 22 1_555 I CA CA . C CA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc18 C O GLY 23 C GLY 23 1_555 I CA CA . C CA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc19 C OD2 ASP 25 C ASP 25 1_555 I CA CA . C CA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc20 C O ALA 27 C ALA 27 1_555 I CA CA . C CA 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc21 I CA CA . C CA 999 1_555 L O HOH . C HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KK8 _atom_sites.fract_transf_matrix[1][1] 0.019378 _atom_sites.fract_transf_matrix[1][2] -0.008129 _atom_sites.fract_transf_matrix[1][3] -0.00065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018529 _atom_sites.fract_transf_matrix[2][3] -0.002462 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 997 997 MG MG . E 5 BEF A 1 995 995 BEF BEF . F 6 ADP A 1 996 996 ADP ADP . G 7 GOL A 1 998 529 GOL GOL . H 4 MG B 1 998 998 MG MG . I 8 CA C 1 999 999 CA CA . J 9 HOH A 1 999 1 HOH HOH . J 9 HOH A 2 1000 3 HOH HOH . J 9 HOH A 3 1001 4 HOH HOH . J 9 HOH A 4 1002 5 HOH HOH . J 9 HOH A 5 1003 6 HOH HOH . J 9 HOH A 6 1004 7 HOH HOH . J 9 HOH A 7 1005 8 HOH HOH . J 9 HOH A 8 1006 9 HOH HOH . J 9 HOH A 9 1007 10 HOH HOH . J 9 HOH A 10 1008 11 HOH HOH . J 9 HOH A 11 1009 12 HOH HOH . J 9 HOH A 12 1010 13 HOH HOH . J 9 HOH A 13 1011 14 HOH HOH . J 9 HOH A 14 1012 15 HOH HOH . J 9 HOH A 15 1013 16 HOH HOH . J 9 HOH A 16 1014 17 HOH HOH . J 9 HOH A 17 1015 18 HOH HOH . J 9 HOH A 18 1016 19 HOH HOH . J 9 HOH A 19 1017 20 HOH HOH . J 9 HOH A 20 1018 22 HOH HOH . J 9 HOH A 21 1019 23 HOH HOH . J 9 HOH A 22 1020 24 HOH HOH . J 9 HOH A 23 1021 25 HOH HOH . J 9 HOH A 24 1022 26 HOH HOH . J 9 HOH A 25 1023 27 HOH HOH . J 9 HOH A 26 1024 28 HOH HOH . J 9 HOH A 27 1025 29 HOH HOH . J 9 HOH A 28 1026 30 HOH HOH . J 9 HOH A 29 1027 31 HOH HOH . J 9 HOH A 30 1028 32 HOH HOH . J 9 HOH A 31 1029 33 HOH HOH . J 9 HOH A 32 1030 43 HOH HOH . J 9 HOH A 33 1031 46 HOH HOH . J 9 HOH A 34 1032 47 HOH HOH . J 9 HOH A 35 1033 48 HOH HOH . J 9 HOH A 36 1034 50 HOH HOH . J 9 HOH A 37 1035 51 HOH HOH . J 9 HOH A 38 1036 52 HOH HOH . J 9 HOH A 39 1037 54 HOH HOH . J 9 HOH A 40 1038 56 HOH HOH . J 9 HOH A 41 1039 57 HOH HOH . J 9 HOH A 42 1040 58 HOH HOH . J 9 HOH A 43 1041 59 HOH HOH . J 9 HOH A 44 1042 60 HOH HOH . J 9 HOH A 45 1043 65 HOH HOH . J 9 HOH A 46 1044 69 HOH HOH . J 9 HOH A 47 1045 71 HOH HOH . J 9 HOH A 48 1046 73 HOH HOH . J 9 HOH A 49 1047 74 HOH HOH . J 9 HOH A 50 1048 75 HOH HOH . J 9 HOH A 51 1049 76 HOH HOH . J 9 HOH A 52 1050 77 HOH HOH . J 9 HOH A 53 1051 83 HOH HOH . J 9 HOH A 54 1052 84 HOH HOH . J 9 HOH A 55 1053 87 HOH HOH . J 9 HOH A 56 1054 88 HOH HOH . J 9 HOH A 57 1055 90 HOH HOH . J 9 HOH A 58 1056 92 HOH HOH . J 9 HOH A 59 1057 93 HOH HOH . J 9 HOH A 60 1058 95 HOH HOH . J 9 HOH A 61 1059 96 HOH HOH . J 9 HOH A 62 1060 97 HOH HOH . J 9 HOH A 63 1061 99 HOH HOH . J 9 HOH A 64 1062 101 HOH HOH . J 9 HOH A 65 1063 102 HOH HOH . J 9 HOH A 66 1064 103 HOH HOH . J 9 HOH A 67 1065 105 HOH HOH . J 9 HOH A 68 1066 106 HOH HOH . J 9 HOH A 69 1067 108 HOH HOH . J 9 HOH A 70 1068 109 HOH HOH . J 9 HOH A 71 1069 110 HOH HOH . J 9 HOH A 72 1070 111 HOH HOH . J 9 HOH A 73 1071 112 HOH HOH . J 9 HOH A 74 1072 116 HOH HOH . J 9 HOH A 75 1073 122 HOH HOH . J 9 HOH A 76 1074 123 HOH HOH . J 9 HOH A 77 1075 124 HOH HOH . J 9 HOH A 78 1076 125 HOH HOH . J 9 HOH A 79 1077 126 HOH HOH . J 9 HOH A 80 1078 130 HOH HOH . J 9 HOH A 81 1079 132 HOH HOH . J 9 HOH A 82 1080 133 HOH HOH . J 9 HOH A 83 1081 135 HOH HOH . J 9 HOH A 84 1082 137 HOH HOH . J 9 HOH A 85 1083 141 HOH HOH . J 9 HOH A 86 1084 143 HOH HOH . J 9 HOH A 87 1085 145 HOH HOH . J 9 HOH A 88 1086 146 HOH HOH . J 9 HOH A 89 1087 147 HOH HOH . J 9 HOH A 90 1088 149 HOH HOH . J 9 HOH A 91 1089 151 HOH HOH . J 9 HOH A 92 1090 152 HOH HOH . J 9 HOH A 93 1091 153 HOH HOH . J 9 HOH A 94 1092 154 HOH HOH . J 9 HOH A 95 1093 162 HOH HOH . J 9 HOH A 96 1094 165 HOH HOH . J 9 HOH A 97 1095 168 HOH HOH . J 9 HOH A 98 1096 169 HOH HOH . J 9 HOH A 99 1097 171 HOH HOH . J 9 HOH A 100 1098 172 HOH HOH . J 9 HOH A 101 1099 173 HOH HOH . J 9 HOH A 102 1100 175 HOH HOH . J 9 HOH A 103 1101 176 HOH HOH . J 9 HOH A 104 1102 177 HOH HOH . J 9 HOH A 105 1103 178 HOH HOH . J 9 HOH A 106 1104 179 HOH HOH . J 9 HOH A 107 1105 181 HOH HOH . J 9 HOH A 108 1106 182 HOH HOH . J 9 HOH A 109 1107 183 HOH HOH . J 9 HOH A 110 1108 184 HOH HOH . J 9 HOH A 111 1109 187 HOH HOH . J 9 HOH A 112 1110 193 HOH HOH . J 9 HOH A 113 1111 196 HOH HOH . J 9 HOH A 114 1112 198 HOH HOH . J 9 HOH A 115 1113 199 HOH HOH . J 9 HOH A 116 1114 200 HOH HOH . J 9 HOH A 117 1115 201 HOH HOH . J 9 HOH A 118 1116 202 HOH HOH . J 9 HOH A 119 1117 203 HOH HOH . J 9 HOH A 120 1118 208 HOH HOH . J 9 HOH A 121 1119 211 HOH HOH . J 9 HOH A 122 1120 212 HOH HOH . J 9 HOH A 123 1121 213 HOH HOH . J 9 HOH A 124 1122 215 HOH HOH . J 9 HOH A 125 1123 216 HOH HOH . J 9 HOH A 126 1124 217 HOH HOH . J 9 HOH A 127 1125 218 HOH HOH . J 9 HOH A 128 1126 219 HOH HOH . J 9 HOH A 129 1127 220 HOH HOH . J 9 HOH A 130 1128 221 HOH HOH . J 9 HOH A 131 1129 222 HOH HOH . J 9 HOH A 132 1130 223 HOH HOH . J 9 HOH A 133 1131 224 HOH HOH . J 9 HOH A 134 1132 225 HOH HOH . J 9 HOH A 135 1133 226 HOH HOH . J 9 HOH A 136 1134 227 HOH HOH . J 9 HOH A 137 1135 228 HOH HOH . J 9 HOH A 138 1136 230 HOH HOH . J 9 HOH A 139 1137 231 HOH HOH . J 9 HOH A 140 1138 233 HOH HOH . J 9 HOH A 141 1139 234 HOH HOH . J 9 HOH A 142 1140 235 HOH HOH . J 9 HOH A 143 1141 238 HOH HOH . J 9 HOH A 144 1142 239 HOH HOH . J 9 HOH A 145 1143 240 HOH HOH . K 9 HOH B 1 999 34 HOH HOH . K 9 HOH B 2 1000 35 HOH HOH . K 9 HOH B 3 1001 41 HOH HOH . K 9 HOH B 4 1002 44 HOH HOH . K 9 HOH B 5 1003 45 HOH HOH . K 9 HOH B 6 1004 72 HOH HOH . K 9 HOH B 7 1005 78 HOH HOH . K 9 HOH B 8 1006 79 HOH HOH . K 9 HOH B 9 1007 127 HOH HOH . K 9 HOH B 10 1008 144 HOH HOH . K 9 HOH B 11 1009 155 HOH HOH . K 9 HOH B 12 1010 174 HOH HOH . K 9 HOH B 13 1011 191 HOH HOH . K 9 HOH B 14 1012 194 HOH HOH . K 9 HOH B 15 1013 195 HOH HOH . K 9 HOH B 16 1014 204 HOH HOH . K 9 HOH B 17 1015 205 HOH HOH . K 9 HOH B 18 1016 206 HOH HOH . K 9 HOH B 19 1017 207 HOH HOH . K 9 HOH B 20 1018 229 HOH HOH . L 9 HOH C 1 1000 2 HOH HOH . L 9 HOH C 2 1001 21 HOH HOH . L 9 HOH C 3 1002 36 HOH HOH . L 9 HOH C 4 1003 37 HOH HOH . L 9 HOH C 5 1004 38 HOH HOH . L 9 HOH C 6 1005 39 HOH HOH . L 9 HOH C 7 1006 40 HOH HOH . L 9 HOH C 8 1007 42 HOH HOH . L 9 HOH C 9 1008 81 HOH HOH . L 9 HOH C 10 1009 82 HOH HOH . L 9 HOH C 11 1010 94 HOH HOH . L 9 HOH C 12 1011 129 HOH HOH . L 9 HOH C 13 1012 150 HOH HOH . L 9 HOH C 14 1013 180 HOH HOH . L 9 HOH C 15 1014 190 HOH HOH . L 9 HOH C 16 1015 192 HOH HOH . L 9 HOH C 17 1016 209 HOH HOH . L 9 HOH C 18 1017 210 HOH HOH . L 9 HOH C 19 1018 236 HOH HOH . L 9 HOH C 20 1019 237 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 8 _atom_site.Cartn_x 44.998 _atom_site.Cartn_y -42.909 _atom_site.Cartn_z -55.147 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 999 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #