data_1KKB # _model_server_result.job_id IYyGZjwi94HiIKz7T89O6g _model_server_result.datetime_utc '2024-11-18 04:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kkb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":437}' # _entry.id 1KKB # _exptl.entry_id 1KKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 119.076 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HADACIDIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KKB _cell.length_a 80.12 _cell.length_b 80.12 _cell.length_c 158.67 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 105.78 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H5 N O4' _chem_comp.formula_weight 119.076 _chem_comp.id HDA _chem_comp.mon_nstd_flag . _chem_comp.name HADACIDIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NA C HDA sing 129 n n NA OB HDA sing 130 n n NA CB HDA sing 131 n n C O HDA doub 132 n n C HC HDA sing 133 n n OB HOB HDA sing 134 n n CB CG HDA sing 135 n n CB HB1 HDA sing 136 n n CB HB2 HDA sing 137 n n CG OD1 HDA doub 138 n n CG OD2 HDA sing 139 n n OD2 HOD HDA sing 140 n n # _atom_sites.entry_id 1KKB _atom_sites.fract_transf_matrix[1][1] 0.012481 _atom_sites.fract_transf_matrix[1][2] 0.007206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HDA A 1 437 437 HDA HDA . C 3 IMP A 1 440 440 IMP IMP . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 503 503 HOH HOH . D 4 HOH A 5 504 504 HOH HOH . D 4 HOH A 6 505 505 HOH HOH . D 4 HOH A 7 506 506 HOH HOH . D 4 HOH A 8 507 507 HOH HOH . D 4 HOH A 9 508 508 HOH HOH . D 4 HOH A 10 509 509 HOH HOH . D 4 HOH A 11 510 510 HOH HOH . D 4 HOH A 12 511 511 HOH HOH . D 4 HOH A 13 512 512 HOH HOH . D 4 HOH A 14 513 513 HOH HOH . D 4 HOH A 15 514 514 HOH HOH . D 4 HOH A 16 515 515 HOH HOH . D 4 HOH A 17 516 516 HOH HOH . D 4 HOH A 18 517 517 HOH HOH . D 4 HOH A 19 518 518 HOH HOH . D 4 HOH A 20 519 519 HOH HOH . D 4 HOH A 21 520 520 HOH HOH . D 4 HOH A 22 521 521 HOH HOH . D 4 HOH A 23 522 522 HOH HOH . D 4 HOH A 24 523 523 HOH HOH . D 4 HOH A 25 524 524 HOH HOH . D 4 HOH A 26 525 525 HOH HOH . D 4 HOH A 27 526 526 HOH HOH . D 4 HOH A 28 527 527 HOH HOH . D 4 HOH A 29 528 528 HOH HOH . D 4 HOH A 30 529 529 HOH HOH . D 4 HOH A 31 530 530 HOH HOH . D 4 HOH A 32 531 531 HOH HOH . D 4 HOH A 33 532 532 HOH HOH . D 4 HOH A 34 533 533 HOH HOH . D 4 HOH A 35 534 534 HOH HOH . D 4 HOH A 36 535 535 HOH HOH . D 4 HOH A 37 536 536 HOH HOH . D 4 HOH A 38 537 537 HOH HOH . D 4 HOH A 39 538 538 HOH HOH . D 4 HOH A 40 539 539 HOH HOH . D 4 HOH A 41 540 540 HOH HOH . D 4 HOH A 42 541 541 HOH HOH . D 4 HOH A 43 542 542 HOH HOH . D 4 HOH A 44 543 543 HOH HOH . D 4 HOH A 45 544 544 HOH HOH . D 4 HOH A 46 545 545 HOH HOH . D 4 HOH A 47 546 546 HOH HOH . D 4 HOH A 48 547 547 HOH HOH . D 4 HOH A 49 548 548 HOH HOH . D 4 HOH A 50 549 549 HOH HOH . D 4 HOH A 51 550 550 HOH HOH . D 4 HOH A 52 551 551 HOH HOH . D 4 HOH A 53 552 552 HOH HOH . D 4 HOH A 54 553 553 HOH HOH . D 4 HOH A 55 554 554 HOH HOH . D 4 HOH A 56 555 555 HOH HOH . D 4 HOH A 57 556 556 HOH HOH . D 4 HOH A 58 557 557 HOH HOH . D 4 HOH A 59 558 558 HOH HOH . D 4 HOH A 60 559 559 HOH HOH . D 4 HOH A 61 560 560 HOH HOH . D 4 HOH A 62 561 561 HOH HOH . D 4 HOH A 63 562 562 HOH HOH . D 4 HOH A 64 563 563 HOH HOH . D 4 HOH A 65 564 564 HOH HOH . D 4 HOH A 66 565 565 HOH HOH . D 4 HOH A 67 566 566 HOH HOH . D 4 HOH A 68 567 567 HOH HOH . D 4 HOH A 69 568 568 HOH HOH . D 4 HOH A 70 569 569 HOH HOH . D 4 HOH A 71 570 570 HOH HOH . D 4 HOH A 72 571 571 HOH HOH . D 4 HOH A 73 572 572 HOH HOH . D 4 HOH A 74 573 573 HOH HOH . D 4 HOH A 75 574 574 HOH HOH . D 4 HOH A 76 575 575 HOH HOH . D 4 HOH A 77 576 576 HOH HOH . D 4 HOH A 78 577 577 HOH HOH . D 4 HOH A 79 578 578 HOH HOH . D 4 HOH A 80 579 579 HOH HOH . D 4 HOH A 81 580 580 HOH HOH . D 4 HOH A 82 581 581 HOH HOH . D 4 HOH A 83 582 582 HOH HOH . D 4 HOH A 84 583 583 HOH HOH . D 4 HOH A 85 584 584 HOH HOH . D 4 HOH A 86 585 585 HOH HOH . D 4 HOH A 87 586 586 HOH HOH . D 4 HOH A 88 587 587 HOH HOH . D 4 HOH A 89 588 588 HOH HOH . D 4 HOH A 90 589 589 HOH HOH . D 4 HOH A 91 590 590 HOH HOH . D 4 HOH A 92 591 591 HOH HOH . D 4 HOH A 93 592 592 HOH HOH . D 4 HOH A 94 593 593 HOH HOH . D 4 HOH A 95 594 594 HOH HOH . D 4 HOH A 96 595 595 HOH HOH . D 4 HOH A 97 596 596 HOH HOH . D 4 HOH A 98 597 597 HOH HOH . D 4 HOH A 99 598 598 HOH HOH . D 4 HOH A 100 599 599 HOH HOH . D 4 HOH A 101 600 600 HOH HOH . D 4 HOH A 102 601 601 HOH HOH . D 4 HOH A 103 602 602 HOH HOH . D 4 HOH A 104 603 603 HOH HOH . D 4 HOH A 105 604 604 HOH HOH . D 4 HOH A 106 605 605 HOH HOH . D 4 HOH A 107 606 606 HOH HOH . D 4 HOH A 108 607 607 HOH HOH . D 4 HOH A 109 608 608 HOH HOH . D 4 HOH A 110 609 609 HOH HOH . D 4 HOH A 111 610 610 HOH HOH . D 4 HOH A 112 611 611 HOH HOH . D 4 HOH A 113 612 612 HOH HOH . D 4 HOH A 114 613 613 HOH HOH . D 4 HOH A 115 614 614 HOH HOH . D 4 HOH A 116 615 615 HOH HOH . D 4 HOH A 117 616 616 HOH HOH . D 4 HOH A 118 617 617 HOH HOH . D 4 HOH A 119 618 618 HOH HOH . D 4 HOH A 120 619 619 HOH HOH . D 4 HOH A 121 620 620 HOH HOH . D 4 HOH A 122 621 621 HOH HOH . D 4 HOH A 123 622 622 HOH HOH . D 4 HOH A 124 623 623 HOH HOH . D 4 HOH A 125 624 624 HOH HOH . D 4 HOH A 126 625 625 HOH HOH . D 4 HOH A 127 626 626 HOH HOH . D 4 HOH A 128 627 627 HOH HOH . D 4 HOH A 129 628 628 HOH HOH . D 4 HOH A 130 629 629 HOH HOH . D 4 HOH A 131 630 630 HOH HOH . D 4 HOH A 132 631 631 HOH HOH . D 4 HOH A 133 632 632 HOH HOH . D 4 HOH A 134 633 633 HOH HOH . D 4 HOH A 135 634 634 HOH HOH . D 4 HOH A 136 635 635 HOH HOH . D 4 HOH A 137 636 636 HOH HOH . D 4 HOH A 138 637 637 HOH HOH . D 4 HOH A 139 638 638 HOH HOH . D 4 HOH A 140 639 639 HOH HOH . D 4 HOH A 141 640 640 HOH HOH . D 4 HOH A 142 641 641 HOH HOH . D 4 HOH A 143 642 642 HOH HOH . D 4 HOH A 144 643 643 HOH HOH . D 4 HOH A 145 644 644 HOH HOH . D 4 HOH A 146 645 645 HOH HOH . D 4 HOH A 147 646 646 HOH HOH . D 4 HOH A 148 647 647 HOH HOH . D 4 HOH A 149 648 648 HOH HOH . D 4 HOH A 150 649 649 HOH HOH . D 4 HOH A 151 650 650 HOH HOH . D 4 HOH A 152 651 651 HOH HOH . D 4 HOH A 153 652 652 HOH HOH . D 4 HOH A 154 653 653 HOH HOH . D 4 HOH A 155 654 654 HOH HOH . D 4 HOH A 156 655 655 HOH HOH . D 4 HOH A 157 656 656 HOH HOH . D 4 HOH A 158 657 657 HOH HOH . D 4 HOH A 159 658 658 HOH HOH . D 4 HOH A 160 659 659 HOH HOH . D 4 HOH A 161 660 660 HOH HOH . D 4 HOH A 162 661 661 HOH HOH . D 4 HOH A 163 662 662 HOH HOH . D 4 HOH A 164 663 663 HOH HOH . D 4 HOH A 165 664 664 HOH HOH . D 4 HOH A 166 665 665 HOH HOH . D 4 HOH A 167 666 666 HOH HOH . D 4 HOH A 168 667 667 HOH HOH . D 4 HOH A 169 668 668 HOH HOH . D 4 HOH A 170 669 669 HOH HOH . D 4 HOH A 171 670 670 HOH HOH . D 4 HOH A 172 671 671 HOH HOH . D 4 HOH A 173 672 672 HOH HOH . D 4 HOH A 174 673 673 HOH HOH . D 4 HOH A 175 674 674 HOH HOH . D 4 HOH A 176 675 675 HOH HOH . D 4 HOH A 177 676 676 HOH HOH . D 4 HOH A 178 677 677 HOH HOH . D 4 HOH A 179 678 678 HOH HOH . D 4 HOH A 180 679 679 HOH HOH . D 4 HOH A 181 680 680 HOH HOH . D 4 HOH A 182 681 681 HOH HOH . D 4 HOH A 183 682 682 HOH HOH . D 4 HOH A 184 683 683 HOH HOH . D 4 HOH A 185 684 684 HOH HOH . D 4 HOH A 186 685 685 HOH HOH . D 4 HOH A 187 686 686 HOH HOH . D 4 HOH A 188 687 687 HOH HOH . D 4 HOH A 189 688 688 HOH HOH . D 4 HOH A 190 689 689 HOH HOH . D 4 HOH A 191 690 690 HOH HOH . D 4 HOH A 192 691 691 HOH HOH . D 4 HOH A 193 692 692 HOH HOH . D 4 HOH A 194 693 693 HOH HOH . D 4 HOH A 195 694 694 HOH HOH . D 4 HOH A 196 695 695 HOH HOH . D 4 HOH A 197 696 696 HOH HOH . D 4 HOH A 198 697 697 HOH HOH . D 4 HOH A 199 698 698 HOH HOH . D 4 HOH A 200 699 699 HOH HOH . D 4 HOH A 201 700 700 HOH HOH . D 4 HOH A 202 701 701 HOH HOH . D 4 HOH A 203 702 702 HOH HOH . D 4 HOH A 204 703 703 HOH HOH . D 4 HOH A 205 704 704 HOH HOH . D 4 HOH A 206 705 705 HOH HOH . D 4 HOH A 207 706 706 HOH HOH . D 4 HOH A 208 707 707 HOH HOH . D 4 HOH A 209 708 708 HOH HOH . D 4 HOH A 210 709 709 HOH HOH . D 4 HOH A 211 710 710 HOH HOH . D 4 HOH A 212 711 711 HOH HOH . D 4 HOH A 213 712 712 HOH HOH . D 4 HOH A 214 713 713 HOH HOH . D 4 HOH A 215 714 714 HOH HOH . D 4 HOH A 216 715 715 HOH HOH . D 4 HOH A 217 716 716 HOH HOH . D 4 HOH A 218 717 717 HOH HOH . D 4 HOH A 219 718 718 HOH HOH . D 4 HOH A 220 719 719 HOH HOH . D 4 HOH A 221 720 720 HOH HOH . D 4 HOH A 222 721 721 HOH HOH . D 4 HOH A 223 722 722 HOH HOH . D 4 HOH A 224 723 723 HOH HOH . D 4 HOH A 225 724 724 HOH HOH . D 4 HOH A 226 725 725 HOH HOH . D 4 HOH A 227 726 726 HOH HOH . D 4 HOH A 228 727 727 HOH HOH . D 4 HOH A 229 728 728 HOH HOH . D 4 HOH A 230 729 729 HOH HOH . D 4 HOH A 231 730 730 HOH HOH . D 4 HOH A 232 731 731 HOH HOH . D 4 HOH A 233 732 732 HOH HOH . D 4 HOH A 234 733 733 HOH HOH . D 4 HOH A 235 734 734 HOH HOH . D 4 HOH A 236 735 735 HOH HOH . D 4 HOH A 237 736 736 HOH HOH . D 4 HOH A 238 737 737 HOH HOH . D 4 HOH A 239 738 738 HOH HOH . D 4 HOH A 240 739 739 HOH HOH . D 4 HOH A 241 740 740 HOH HOH . D 4 HOH A 242 741 741 HOH HOH . D 4 HOH A 243 742 742 HOH HOH . D 4 HOH A 244 743 743 HOH HOH . D 4 HOH A 245 744 744 HOH HOH . D 4 HOH A 246 745 745 HOH HOH . D 4 HOH A 247 746 746 HOH HOH . D 4 HOH A 248 747 747 HOH HOH . D 4 HOH A 249 748 748 HOH HOH . D 4 HOH A 250 749 749 HOH HOH . D 4 HOH A 251 750 750 HOH HOH . D 4 HOH A 252 751 751 HOH HOH . D 4 HOH A 253 752 752 HOH HOH . D 4 HOH A 254 753 753 HOH HOH . D 4 HOH A 255 754 754 HOH HOH . D 4 HOH A 256 755 755 HOH HOH . D 4 HOH A 257 756 756 HOH HOH . D 4 HOH A 258 757 757 HOH HOH . D 4 HOH A 259 758 758 HOH HOH . D 4 HOH A 260 759 759 HOH HOH . D 4 HOH A 261 760 760 HOH HOH . D 4 HOH A 262 761 761 HOH HOH . D 4 HOH A 263 762 762 HOH HOH . D 4 HOH A 264 763 763 HOH HOH . D 4 HOH A 265 764 764 HOH HOH . D 4 HOH A 266 765 765 HOH HOH . D 4 HOH A 267 766 766 HOH HOH . D 4 HOH A 268 767 767 HOH HOH . D 4 HOH A 269 768 768 HOH HOH . D 4 HOH A 270 769 769 HOH HOH . D 4 HOH A 271 770 770 HOH HOH . D 4 HOH A 272 771 771 HOH HOH . D 4 HOH A 273 772 772 HOH HOH . D 4 HOH A 274 773 773 HOH HOH . D 4 HOH A 275 774 774 HOH HOH . D 4 HOH A 276 775 775 HOH HOH . D 4 HOH A 277 776 776 HOH HOH . D 4 HOH A 278 777 777 HOH HOH . D 4 HOH A 279 778 778 HOH HOH . D 4 HOH A 280 779 779 HOH HOH . D 4 HOH A 281 780 780 HOH HOH . D 4 HOH A 282 781 781 HOH HOH . D 4 HOH A 283 782 782 HOH HOH . D 4 HOH A 284 783 783 HOH HOH . D 4 HOH A 285 784 784 HOH HOH . D 4 HOH A 286 785 785 HOH HOH . D 4 HOH A 287 786 786 HOH HOH . D 4 HOH A 288 787 787 HOH HOH . D 4 HOH A 289 788 788 HOH HOH . D 4 HOH A 290 789 789 HOH HOH . D 4 HOH A 291 790 790 HOH HOH . D 4 HOH A 292 791 791 HOH HOH . D 4 HOH A 293 792 792 HOH HOH . D 4 HOH A 294 793 793 HOH HOH . D 4 HOH A 295 794 794 HOH HOH . D 4 HOH A 296 795 795 HOH HOH . D 4 HOH A 297 796 796 HOH HOH . D 4 HOH A 298 797 797 HOH HOH . D 4 HOH A 299 798 798 HOH HOH . D 4 HOH A 300 799 799 HOH HOH . D 4 HOH A 301 800 800 HOH HOH . D 4 HOH A 302 801 801 HOH HOH . D 4 HOH A 303 802 802 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NA HDA . . . B 2 -6.743 53.804 46.467 1 60.09 ? NA HDA 437 A 1 HETATM 2 C C HDA . . . B 2 -6.85 52.645 45.642 1 60.97 ? C HDA 437 A 1 HETATM 3 O O HDA . . . B 2 -5.87 52.148 45.146 1 63.97 ? O HDA 437 A 1 HETATM 4 O OB HDA . . . B 2 -5.567 53.915 47.235 1 55.74 ? OB HDA 437 A 1 HETATM 5 C CB HDA . . . B 2 -7.966 54.231 47.196 1 52.3 ? CB HDA 437 A 1 HETATM 6 C CG HDA . . . B 2 -8.272 55.7 47.009 1 50.79 ? CG HDA 437 A 1 HETATM 7 O OD1 HDA . . . B 2 -9.174 56.204 47.7 1 52.1 ? OD1 HDA 437 A 1 HETATM 8 O OD2 HDA . . . B 2 -7.631 56.379 46.176 1 46.34 ? OD2 HDA 437 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #