data_1KL1 # _model_server_result.job_id AlSFUtkRuczaeQYG1fx-gQ _model_server_result.datetime_utc '2024-12-14 19:38:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1KL1 # _exptl.entry_id 1KL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KL1 _cell.length_a 61.266 _cell.length_b 106.4 _cell.length_c 56.986 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C4A _struct_conn.ptnr1_label_comp_id PLP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PLP _struct_conn.ptnr1_auth_seq_id 501 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.354 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 1KL1 _atom_sites.fract_transf_matrix[1][1] 0.01632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 501 501 PLP PLP . C 3 GLY A 1 601 501 GLY PLP . D 4 HOH A 1 602 1 HOH HOH . D 4 HOH A 2 603 2 HOH HOH . D 4 HOH A 3 604 3 HOH HOH . D 4 HOH A 4 605 4 HOH HOH . D 4 HOH A 5 606 5 HOH HOH . D 4 HOH A 6 607 6 HOH HOH . D 4 HOH A 7 608 7 HOH HOH . D 4 HOH A 8 609 8 HOH HOH . D 4 HOH A 9 610 9 HOH HOH . D 4 HOH A 10 611 10 HOH HOH . D 4 HOH A 11 612 11 HOH HOH . D 4 HOH A 12 613 12 HOH HOH . D 4 HOH A 13 614 13 HOH HOH . D 4 HOH A 14 615 14 HOH HOH . D 4 HOH A 15 616 15 HOH HOH . D 4 HOH A 16 617 16 HOH HOH . D 4 HOH A 17 618 17 HOH HOH . D 4 HOH A 18 619 18 HOH HOH . D 4 HOH A 19 620 19 HOH HOH . D 4 HOH A 20 621 20 HOH HOH . D 4 HOH A 21 622 21 HOH HOH . D 4 HOH A 22 623 22 HOH HOH . D 4 HOH A 23 624 23 HOH HOH . D 4 HOH A 24 625 24 HOH HOH . D 4 HOH A 25 626 25 HOH HOH . D 4 HOH A 26 627 26 HOH HOH . D 4 HOH A 27 628 27 HOH HOH . D 4 HOH A 28 629 28 HOH HOH . D 4 HOH A 29 630 29 HOH HOH . D 4 HOH A 30 631 30 HOH HOH . D 4 HOH A 31 632 31 HOH HOH . D 4 HOH A 32 633 32 HOH HOH . D 4 HOH A 33 634 33 HOH HOH . D 4 HOH A 34 635 34 HOH HOH . D 4 HOH A 35 636 35 HOH HOH . D 4 HOH A 36 637 36 HOH HOH . D 4 HOH A 37 638 37 HOH HOH . D 4 HOH A 38 639 38 HOH HOH . D 4 HOH A 39 640 39 HOH HOH . D 4 HOH A 40 641 40 HOH HOH . D 4 HOH A 41 642 41 HOH HOH . D 4 HOH A 42 643 42 HOH HOH . D 4 HOH A 43 644 43 HOH HOH . D 4 HOH A 44 645 44 HOH HOH . D 4 HOH A 45 646 45 HOH HOH . D 4 HOH A 46 647 46 HOH HOH . D 4 HOH A 47 648 47 HOH HOH . D 4 HOH A 48 649 48 HOH HOH . D 4 HOH A 49 650 49 HOH HOH . D 4 HOH A 50 651 50 HOH HOH . D 4 HOH A 51 652 51 HOH HOH . D 4 HOH A 52 653 52 HOH HOH . D 4 HOH A 53 654 53 HOH HOH . D 4 HOH A 54 655 54 HOH HOH . D 4 HOH A 55 656 55 HOH HOH . D 4 HOH A 56 657 56 HOH HOH . D 4 HOH A 57 658 57 HOH HOH . D 4 HOH A 58 659 58 HOH HOH . D 4 HOH A 59 660 59 HOH HOH . D 4 HOH A 60 661 60 HOH HOH . D 4 HOH A 61 662 61 HOH HOH . D 4 HOH A 62 663 62 HOH HOH . D 4 HOH A 63 664 63 HOH HOH . D 4 HOH A 64 665 64 HOH HOH . D 4 HOH A 65 666 65 HOH HOH . D 4 HOH A 66 667 66 HOH HOH . D 4 HOH A 67 668 67 HOH HOH . D 4 HOH A 68 669 68 HOH HOH . D 4 HOH A 69 670 69 HOH HOH . D 4 HOH A 70 671 70 HOH HOH . D 4 HOH A 71 672 71 HOH HOH . D 4 HOH A 72 673 72 HOH HOH . D 4 HOH A 73 674 73 HOH HOH . D 4 HOH A 74 675 74 HOH HOH . D 4 HOH A 75 676 75 HOH HOH . D 4 HOH A 76 677 76 HOH HOH . D 4 HOH A 77 678 77 HOH HOH . D 4 HOH A 78 679 78 HOH HOH . D 4 HOH A 79 680 79 HOH HOH . D 4 HOH A 80 681 80 HOH HOH . D 4 HOH A 81 682 81 HOH HOH . D 4 HOH A 82 683 82 HOH HOH . D 4 HOH A 83 684 83 HOH HOH . D 4 HOH A 84 685 84 HOH HOH . D 4 HOH A 85 686 85 HOH HOH . D 4 HOH A 86 687 86 HOH HOH . D 4 HOH A 87 688 87 HOH HOH . D 4 HOH A 88 689 88 HOH HOH . D 4 HOH A 89 690 89 HOH HOH . D 4 HOH A 90 691 90 HOH HOH . D 4 HOH A 91 692 91 HOH HOH . D 4 HOH A 92 693 92 HOH HOH . D 4 HOH A 93 694 93 HOH HOH . D 4 HOH A 94 695 94 HOH HOH . D 4 HOH A 95 696 95 HOH HOH . D 4 HOH A 96 697 96 HOH HOH . D 4 HOH A 97 698 97 HOH HOH . D 4 HOH A 98 699 98 HOH HOH . D 4 HOH A 99 700 99 HOH HOH . D 4 HOH A 100 701 100 HOH HOH . D 4 HOH A 101 702 101 HOH HOH . D 4 HOH A 102 703 102 HOH HOH . D 4 HOH A 103 704 103 HOH HOH . D 4 HOH A 104 705 104 HOH HOH . D 4 HOH A 105 706 105 HOH HOH . D 4 HOH A 106 707 106 HOH HOH . D 4 HOH A 107 708 107 HOH HOH . D 4 HOH A 108 709 108 HOH HOH . D 4 HOH A 109 710 109 HOH HOH . D 4 HOH A 110 711 110 HOH HOH . D 4 HOH A 111 712 111 HOH HOH . D 4 HOH A 112 713 112 HOH HOH . D 4 HOH A 113 714 113 HOH HOH . D 4 HOH A 114 715 114 HOH HOH . D 4 HOH A 115 716 115 HOH HOH . D 4 HOH A 116 717 116 HOH HOH . D 4 HOH A 117 718 117 HOH HOH . D 4 HOH A 118 719 118 HOH HOH . D 4 HOH A 119 720 119 HOH HOH . D 4 HOH A 120 721 120 HOH HOH . D 4 HOH A 121 722 121 HOH HOH . D 4 HOH A 122 723 122 HOH HOH . D 4 HOH A 123 724 123 HOH HOH . D 4 HOH A 124 725 124 HOH HOH . D 4 HOH A 125 726 125 HOH HOH . D 4 HOH A 126 727 126 HOH HOH . D 4 HOH A 127 728 127 HOH HOH . D 4 HOH A 128 729 128 HOH HOH . D 4 HOH A 129 730 129 HOH HOH . D 4 HOH A 130 731 130 HOH HOH . D 4 HOH A 131 732 131 HOH HOH . D 4 HOH A 132 733 132 HOH HOH . D 4 HOH A 133 734 133 HOH HOH . D 4 HOH A 134 735 134 HOH HOH . D 4 HOH A 135 736 135 HOH HOH . D 4 HOH A 136 737 136 HOH HOH . D 4 HOH A 137 738 137 HOH HOH . D 4 HOH A 138 739 138 HOH HOH . D 4 HOH A 139 740 139 HOH HOH . D 4 HOH A 140 741 140 HOH HOH . D 4 HOH A 141 742 141 HOH HOH . D 4 HOH A 142 743 142 HOH HOH . D 4 HOH A 143 744 143 HOH HOH . D 4 HOH A 144 745 144 HOH HOH . D 4 HOH A 145 746 145 HOH HOH . D 4 HOH A 146 747 146 HOH HOH . D 4 HOH A 147 748 147 HOH HOH . D 4 HOH A 148 749 148 HOH HOH . D 4 HOH A 149 750 149 HOH HOH . D 4 HOH A 150 751 150 HOH HOH . D 4 HOH A 151 752 151 HOH HOH . D 4 HOH A 152 753 152 HOH HOH . D 4 HOH A 153 754 153 HOH HOH . D 4 HOH A 154 755 154 HOH HOH . D 4 HOH A 155 756 155 HOH HOH . D 4 HOH A 156 757 156 HOH HOH . D 4 HOH A 157 758 157 HOH HOH . D 4 HOH A 158 759 158 HOH HOH . D 4 HOH A 159 760 159 HOH HOH . D 4 HOH A 160 761 160 HOH HOH . D 4 HOH A 161 762 161 HOH HOH . D 4 HOH A 162 763 162 HOH HOH . D 4 HOH A 163 764 163 HOH HOH . D 4 HOH A 164 765 164 HOH HOH . D 4 HOH A 165 766 165 HOH HOH . D 4 HOH A 166 767 166 HOH HOH . D 4 HOH A 167 768 167 HOH HOH . D 4 HOH A 168 769 168 HOH HOH . D 4 HOH A 169 770 169 HOH HOH . D 4 HOH A 170 771 170 HOH HOH . D 4 HOH A 171 772 171 HOH HOH . D 4 HOH A 172 773 172 HOH HOH . D 4 HOH A 173 774 173 HOH HOH . D 4 HOH A 174 775 174 HOH HOH . D 4 HOH A 175 776 175 HOH HOH . D 4 HOH A 176 777 176 HOH HOH . D 4 HOH A 177 778 177 HOH HOH . D 4 HOH A 178 779 178 HOH HOH . D 4 HOH A 179 780 179 HOH HOH . D 4 HOH A 180 781 180 HOH HOH . D 4 HOH A 181 782 181 HOH HOH . D 4 HOH A 182 783 182 HOH HOH . D 4 HOH A 183 784 183 HOH HOH . D 4 HOH A 184 785 184 HOH HOH . D 4 HOH A 185 786 185 HOH HOH . D 4 HOH A 186 787 186 HOH HOH . D 4 HOH A 187 788 187 HOH HOH . D 4 HOH A 188 789 188 HOH HOH . D 4 HOH A 189 790 189 HOH HOH . D 4 HOH A 190 791 190 HOH HOH . D 4 HOH A 191 792 191 HOH HOH . D 4 HOH A 192 793 192 HOH HOH . D 4 HOH A 193 794 193 HOH HOH . D 4 HOH A 194 795 194 HOH HOH . D 4 HOH A 195 796 195 HOH HOH . D 4 HOH A 196 797 196 HOH HOH . D 4 HOH A 197 798 197 HOH HOH . D 4 HOH A 198 799 198 HOH HOH . D 4 HOH A 199 800 199 HOH HOH . D 4 HOH A 200 801 200 HOH HOH . D 4 HOH A 201 802 201 HOH HOH . D 4 HOH A 202 803 202 HOH HOH . D 4 HOH A 203 804 203 HOH HOH . D 4 HOH A 204 805 204 HOH HOH . D 4 HOH A 205 806 205 HOH HOH . D 4 HOH A 206 807 206 HOH HOH . D 4 HOH A 207 808 207 HOH HOH . D 4 HOH A 208 809 208 HOH HOH . D 4 HOH A 209 810 209 HOH HOH . D 4 HOH A 210 811 210 HOH HOH . D 4 HOH A 211 812 211 HOH HOH . D 4 HOH A 212 813 212 HOH HOH . D 4 HOH A 213 814 213 HOH HOH . D 4 HOH A 214 815 214 HOH HOH . D 4 HOH A 215 816 215 HOH HOH . D 4 HOH A 216 817 216 HOH HOH . D 4 HOH A 217 818 217 HOH HOH . D 4 HOH A 218 819 218 HOH HOH . D 4 HOH A 219 820 219 HOH HOH . D 4 HOH A 220 821 220 HOH HOH . D 4 HOH A 221 822 221 HOH HOH . D 4 HOH A 222 823 222 HOH HOH . D 4 HOH A 223 824 223 HOH HOH . D 4 HOH A 224 825 224 HOH HOH . D 4 HOH A 225 826 225 HOH HOH . D 4 HOH A 226 827 226 HOH HOH . D 4 HOH A 227 828 227 HOH HOH . D 4 HOH A 228 829 228 HOH HOH . D 4 HOH A 229 830 229 HOH HOH . D 4 HOH A 230 831 230 HOH HOH . D 4 HOH A 231 832 231 HOH HOH . D 4 HOH A 232 833 232 HOH HOH . D 4 HOH A 233 834 233 HOH HOH . D 4 HOH A 234 835 234 HOH HOH . D 4 HOH A 235 836 235 HOH HOH . D 4 HOH A 236 837 236 HOH HOH . D 4 HOH A 237 838 237 HOH HOH . D 4 HOH A 238 839 238 HOH HOH . D 4 HOH A 239 840 239 HOH HOH . D 4 HOH A 240 841 240 HOH HOH . D 4 HOH A 241 842 241 HOH HOH . D 4 HOH A 242 843 242 HOH HOH . D 4 HOH A 243 844 243 HOH HOH . D 4 HOH A 244 845 244 HOH HOH . D 4 HOH A 245 846 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 9.705 9.33 22.435 1 11.22 ? N1 PLP 501 A 1 HETATM 2 C C2 PLP . . . B 2 10.107 10.536 21.989 1 11.92 ? C2 PLP 501 A 1 HETATM 3 C C2A PLP . . . B 2 11.446 10.992 22.451 1 10.17 ? C2A PLP 501 A 1 HETATM 4 C C3 PLP . . . B 2 9.194 11.226 21.119 1 11.99 ? C3 PLP 501 A 1 HETATM 5 O O3 PLP . . . B 2 9.485 12.407 20.626 1 12.77 ? O3 PLP 501 A 1 HETATM 6 C C4 PLP . . . B 2 7.932 10.58 20.821 1 12.42 ? C4 PLP 501 A 1 HETATM 7 C C4A PLP . . . B 2 7.003 11.284 19.957 1 12.68 ? C4A PLP 501 A 1 HETATM 8 C C5 PLP . . . B 2 7.595 9.313 21.332 1 11.56 ? C5 PLP 501 A 1 HETATM 9 C C6 PLP . . . B 2 8.524 8.666 22.182 1 11.21 ? C6 PLP 501 A 1 HETATM 10 C C5A PLP . . . B 2 6.326 8.558 21.128 1 10.25 ? C5A PLP 501 A 1 HETATM 11 O O4P PLP . . . B 2 6.103 7.997 19.86 1 10.2 ? O4P PLP 501 A 1 HETATM 12 P P PLP . . . B 2 4.713 7.629 19.256 1 9.44 ? P PLP 501 A 1 HETATM 13 O O1P PLP . . . B 2 3.956 6.953 20.338 1 8.82 ? O1P PLP 501 A 1 HETATM 14 O O2P PLP . . . B 2 4.1 9.018 18.862 1 9.67 ? O2P PLP 501 A 1 HETATM 15 O O3P PLP . . . B 2 4.961 6.842 18.016 1 9.52 ? O3P PLP 501 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #