data_1KL2 # _model_server_result.job_id icn2_JfSSzJe_Qf4cvVNJg _model_server_result.datetime_utc '2024-10-10 21:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 1KL2 # _exptl.entry_id 1KL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.439 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.43 _cell.angle_gamma 90 _cell.entry_id 1KL2 _cell.length_a 57.419 _cell.length_b 104.609 _cell.length_c 62.489 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C4A PLP . A PLP 501 1_555 D N GLY . A GLY 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 F C4A PLP . B PLP 502 1_555 G N GLY . B GLY 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? # _chem_comp.formula 'C20 H23 N7 O7' _chem_comp.formula_weight 473.439 _chem_comp.id FON _chem_comp.mon_nstd_flag . _chem_comp.name 'N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[6R]-5-FORMYL-5,6,7,8-TETRAHYDROFOLATE;6R-FOLINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FON sing 83 n y N1 C8A FON sing 84 n y N1 HN1 FON sing 85 n n C2 NA2 FON sing 86 n n C2 N3 FON doub 87 n y NA2 HN21 FON sing 88 n n NA2 HN22 FON sing 89 n n N3 C4 FON sing 90 n y C4 O4 FON doub 91 n n C4 C4A FON sing 92 n y C4A N5 FON sing 93 n n C4A C8A FON doub 94 n y N5 C6 FON sing 95 n n N5 CP1 FON sing 96 n n C6 C7 FON sing 97 n n C6 C9 FON sing 98 n n C6 H61 FON sing 99 n n C7 N8 FON sing 100 n n C7 H7 FON sing 101 n n C7 HC72 FON sing 102 n n N8 C8A FON sing 103 n n N8 HN8 FON sing 104 n n C9 N10 FON sing 105 n n C9 H91 FON sing 106 n n C9 H92 FON sing 107 n n N10 C14 FON sing 108 n n N10 HN0 FON sing 109 n n C11 C12 FON doub 110 n y C11 C16 FON sing 111 n y C11 C FON sing 112 n n C12 C13 FON sing 113 n y C12 H12 FON sing 114 n n C13 C14 FON doub 115 n y C13 H13 FON sing 116 n n C14 C15 FON sing 117 n y C15 C16 FON doub 118 n y C15 H15 FON sing 119 n n C16 H16 FON sing 120 n n C O FON doub 121 n n C N FON sing 122 n n N CA FON sing 123 n n N HN FON sing 124 n n CA CB FON sing 125 n n CA CT FON sing 126 n n CA HA FON sing 127 n n CB CG FON sing 128 n n CB HB1 FON sing 129 n n CB HB2 FON sing 130 n n CG CD FON sing 131 n n CG HG1 FON sing 132 n n CG HG2 FON sing 133 n n CD OE1 FON doub 134 n n CD OE2 FON sing 135 n n OE2 HOE2 FON sing 136 n n CT O1 FON doub 137 n n CT O2 FON sing 138 n n O2 HO2 FON sing 139 n n CP1 O3 FON doub 140 n n CP1 HCP1 FON sing 141 n n # _atom_sites.entry_id 1KL2 _atom_sites.fract_transf_matrix[1][1] 0.01742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 501 501 PLP PLP . D 3 GLY A 1 601 501 GLY PLP . E 4 FON A 1 505 505 FON THF . F 2 PLP B 1 502 502 PLP PLP . G 3 GLY B 1 602 502 GLY PLP . H 4 FON B 1 506 506 FON THF . I 5 HOH A 1 602 3 HOH HOH . I 5 HOH A 2 603 4 HOH HOH . I 5 HOH A 3 604 5 HOH HOH . I 5 HOH A 4 605 6 HOH HOH . I 5 HOH A 5 606 7 HOH HOH . I 5 HOH A 6 607 8 HOH HOH . I 5 HOH A 7 608 9 HOH HOH . I 5 HOH A 8 609 10 HOH HOH . I 5 HOH A 9 610 11 HOH HOH . I 5 HOH A 10 611 17 HOH HOH . I 5 HOH A 11 612 21 HOH HOH . I 5 HOH A 12 613 24 HOH HOH . I 5 HOH A 13 614 25 HOH HOH . I 5 HOH A 14 615 26 HOH HOH . I 5 HOH A 15 616 27 HOH HOH . I 5 HOH A 16 617 28 HOH HOH . I 5 HOH A 17 618 29 HOH HOH . I 5 HOH A 18 619 30 HOH HOH . I 5 HOH A 19 620 31 HOH HOH . I 5 HOH A 20 621 32 HOH HOH . I 5 HOH A 21 622 33 HOH HOH . I 5 HOH A 22 623 34 HOH HOH . I 5 HOH A 23 624 35 HOH HOH . I 5 HOH A 24 625 57 HOH HOH . J 5 HOH B 1 603 1 HOH HOH . J 5 HOH B 2 604 2 HOH HOH . J 5 HOH B 3 605 12 HOH HOH . J 5 HOH B 4 606 13 HOH HOH . J 5 HOH B 5 607 14 HOH HOH . J 5 HOH B 6 608 15 HOH HOH . J 5 HOH B 7 609 16 HOH HOH . J 5 HOH B 8 610 18 HOH HOH . J 5 HOH B 9 611 19 HOH HOH . J 5 HOH B 10 612 20 HOH HOH . J 5 HOH B 11 613 22 HOH HOH . J 5 HOH B 12 614 23 HOH HOH . J 5 HOH B 13 615 36 HOH HOH . J 5 HOH B 14 616 37 HOH HOH . J 5 HOH B 15 617 38 HOH HOH . J 5 HOH B 16 618 39 HOH HOH . J 5 HOH B 17 619 40 HOH HOH . J 5 HOH B 18 620 41 HOH HOH . J 5 HOH B 19 621 42 HOH HOH . J 5 HOH B 20 622 43 HOH HOH . J 5 HOH B 21 623 44 HOH HOH . J 5 HOH B 22 624 45 HOH HOH . J 5 HOH B 23 625 46 HOH HOH . J 5 HOH B 24 626 47 HOH HOH . J 5 HOH B 25 627 48 HOH HOH . J 5 HOH B 26 628 49 HOH HOH . J 5 HOH B 27 629 50 HOH HOH . J 5 HOH B 28 630 51 HOH HOH . J 5 HOH B 29 631 52 HOH HOH . J 5 HOH B 30 632 53 HOH HOH . J 5 HOH B 31 633 54 HOH HOH . J 5 HOH B 32 634 55 HOH HOH . J 5 HOH B 33 635 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FON . . . H 4 23.833 29.058 7.34 1 34.94 ? N1 FON 506 B 1 HETATM 2 C C2 FON . . . H 4 24.919 28.515 6.758 1 34.47 ? C2 FON 506 B 1 HETATM 3 N NA2 FON . . . H 4 25.714 28.965 5.831 1 34.2 ? NA2 FON 506 B 1 HETATM 4 N N3 FON . . . H 4 25.256 27.232 7.233 1 35.25 ? N3 FON 506 B 1 HETATM 5 C C4 FON . . . H 4 24.603 26.511 8.219 1 34.75 ? C4 FON 506 B 1 HETATM 6 O O4 FON . . . H 4 24.958 25.374 8.629 1 33.3 ? O4 FON 506 B 1 HETATM 7 C C4A FON . . . H 4 23.408 27.183 8.807 1 35.13 ? C4A FON 506 B 1 HETATM 8 N N5 FON . . . H 4 22.618 26.511 9.831 1 35.95 ? N5 FON 506 B 1 HETATM 9 C C6 FON . . . H 4 21.575 27.268 10.462 1 35.78 ? C6 FON 506 B 1 HETATM 10 C C7 FON . . . H 4 21.261 28.513 9.761 1 35.44 ? C7 FON 506 B 1 HETATM 11 N N8 FON . . . H 4 21.987 29.127 8.822 1 35.21 ? N8 FON 506 B 1 HETATM 12 C C8A FON . . . H 4 23.089 28.433 8.33 1 35.12 ? C8A FON 506 B 1 HETATM 13 C C9 FON . . . H 4 22.179 27.948 11.792 1 35.1 ? C9 FON 506 B 1 HETATM 14 N N10 FON . . . H 4 23.291 27.222 12.426 1 36.47 ? N10 FON 506 B 1 HETATM 15 C C11 FON . . . H 4 26.699 28.074 14.545 1 37.2 ? C11 FON 506 B 1 HETATM 16 C C12 FON . . . H 4 25.658 27.376 15.215 1 37.48 ? C12 FON 506 B 1 HETATM 17 C C13 FON . . . H 4 24.483 27.172 14.538 1 38.27 ? C13 FON 506 B 1 HETATM 18 C C14 FON . . . H 4 24.448 27.691 13.192 1 38.36 ? C14 FON 506 B 1 HETATM 19 C C15 FON . . . H 4 25.398 28.359 12.516 1 38.24 ? C15 FON 506 B 1 HETATM 20 C C16 FON . . . H 4 26.586 28.545 13.254 1 37.63 ? C16 FON 506 B 1 HETATM 21 C C FON . . . H 4 28.11 28.148 15.139 1 39 ? C FON 506 B 1 HETATM 22 O O FON . . . H 4 29.109 28.365 14.407 1 38.3 ? O FON 506 B 1 HETATM 23 N N FON . . . H 4 28.238 28.547 16.427 1 40.5 ? N FON 506 B 1 HETATM 24 C CA FON . . . H 4 29.607 28.783 16.982 1 42.41 ? CA FON 506 B 1 HETATM 25 C CB FON . . . H 4 29.834 30.301 17.229 1 42.42 ? CB FON 506 B 1 HETATM 26 C CG FON . . . H 4 28.488 31.166 17.574 1 43.59 ? CG FON 506 B 1 HETATM 27 C CD FON . . . H 4 28.359 32.201 18.736 1 44.81 ? CD FON 506 B 1 HETATM 28 O OE1 FON . . . H 4 28.393 33.387 18.338 1 45.06 ? OE1 FON 506 B 1 HETATM 29 O OE2 FON . . . H 4 27.665 31.802 19.821 1 45.98 ? OE2 FON 506 B 1 HETATM 30 C CT FON . . . H 4 29.709 28.107 18.32 1 43.03 ? CT FON 506 B 1 HETATM 31 O O1 FON . . . H 4 28.72 27.527 18.795 1 43.44 ? O1 FON 506 B 1 HETATM 32 O O2 FON . . . H 4 30.662 28.455 19.074 1 43.79 ? O2 FON 506 B 1 HETATM 33 C CP1 FON . . . H 4 23.089 25.275 10.195 1 36.41 ? CP1 FON 506 B 1 HETATM 34 O O3 FON . . . H 4 22.431 24.691 11.092 1 36.81 ? O3 FON 506 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #