data_1KL2 # _model_server_result.job_id g7VSDQqEFYbkZwtShOtxzA _model_server_result.datetime_utc '2024-11-24 18:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 1KL2 # _exptl.entry_id 1KL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.43 _cell.angle_gamma 90 _cell.entry_id 1KL2 _cell.length_a 57.419 _cell.length_b 104.609 _cell.length_c 62.489 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C4A PLP . A PLP 501 1_555 D N GLY . A GLY 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 F C4A PLP . B PLP 502 1_555 G N GLY . B GLY 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 179 n n N H GLY sing 180 n n N H2 GLY sing 181 n n CA C GLY sing 182 n n CA HA2 GLY sing 183 n n CA HA3 GLY sing 184 n n C O GLY doub 185 n n C OXT GLY sing 186 n n OXT HXT GLY sing 187 n n # _atom_sites.entry_id 1KL2 _atom_sites.fract_transf_matrix[1][1] 0.01742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 501 501 PLP PLP . D 3 GLY A 1 601 501 GLY PLP . E 4 FON A 1 505 505 FON THF . F 2 PLP B 1 502 502 PLP PLP . G 3 GLY B 1 602 502 GLY PLP . H 4 FON B 1 506 506 FON THF . I 5 HOH A 1 602 3 HOH HOH . I 5 HOH A 2 603 4 HOH HOH . I 5 HOH A 3 604 5 HOH HOH . I 5 HOH A 4 605 6 HOH HOH . I 5 HOH A 5 606 7 HOH HOH . I 5 HOH A 6 607 8 HOH HOH . I 5 HOH A 7 608 9 HOH HOH . I 5 HOH A 8 609 10 HOH HOH . I 5 HOH A 9 610 11 HOH HOH . I 5 HOH A 10 611 17 HOH HOH . I 5 HOH A 11 612 21 HOH HOH . I 5 HOH A 12 613 24 HOH HOH . I 5 HOH A 13 614 25 HOH HOH . I 5 HOH A 14 615 26 HOH HOH . I 5 HOH A 15 616 27 HOH HOH . I 5 HOH A 16 617 28 HOH HOH . I 5 HOH A 17 618 29 HOH HOH . I 5 HOH A 18 619 30 HOH HOH . I 5 HOH A 19 620 31 HOH HOH . I 5 HOH A 20 621 32 HOH HOH . I 5 HOH A 21 622 33 HOH HOH . I 5 HOH A 22 623 34 HOH HOH . I 5 HOH A 23 624 35 HOH HOH . I 5 HOH A 24 625 57 HOH HOH . J 5 HOH B 1 603 1 HOH HOH . J 5 HOH B 2 604 2 HOH HOH . J 5 HOH B 3 605 12 HOH HOH . J 5 HOH B 4 606 13 HOH HOH . J 5 HOH B 5 607 14 HOH HOH . J 5 HOH B 6 608 15 HOH HOH . J 5 HOH B 7 609 16 HOH HOH . J 5 HOH B 8 610 18 HOH HOH . J 5 HOH B 9 611 19 HOH HOH . J 5 HOH B 10 612 20 HOH HOH . J 5 HOH B 11 613 22 HOH HOH . J 5 HOH B 12 614 23 HOH HOH . J 5 HOH B 13 615 36 HOH HOH . J 5 HOH B 14 616 37 HOH HOH . J 5 HOH B 15 617 38 HOH HOH . J 5 HOH B 16 618 39 HOH HOH . J 5 HOH B 17 619 40 HOH HOH . J 5 HOH B 18 620 41 HOH HOH . J 5 HOH B 19 621 42 HOH HOH . J 5 HOH B 20 622 43 HOH HOH . J 5 HOH B 21 623 44 HOH HOH . J 5 HOH B 22 624 45 HOH HOH . J 5 HOH B 23 625 46 HOH HOH . J 5 HOH B 24 626 47 HOH HOH . J 5 HOH B 25 627 48 HOH HOH . J 5 HOH B 26 628 49 HOH HOH . J 5 HOH B 27 629 50 HOH HOH . J 5 HOH B 28 630 51 HOH HOH . J 5 HOH B 29 631 52 HOH HOH . J 5 HOH B 30 632 53 HOH HOH . J 5 HOH B 31 633 54 HOH HOH . J 5 HOH B 32 634 55 HOH HOH . J 5 HOH B 33 635 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . D 3 18.392 -1.265 22.235 1 38.22 ? N GLY 601 A 1 HETATM 2 C CA GLY . . . D 3 17.641 -2.038 21.274 1 37.37 ? CA GLY 601 A 1 HETATM 3 C C GLY . . . D 3 17.156 -3.328 21.91 1 37.86 ? C GLY 601 A 1 HETATM 4 O O GLY . . . D 3 17.453 -3.525 23.106 1 37.05 ? O GLY 601 A 1 HETATM 5 O OXT GLY . . . D 3 16.475 -4.136 21.245 1 38.08 ? OXT GLY 601 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #