data_1KLL # _model_server_result.job_id TSHN7hPuNrV3SGHuwTtGXA _model_server_result.datetime_utc '2024-12-26 14:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9138}' # _entry.id 1KLL # _exptl.entry_id 1KLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.301 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-CIS-1-HYDROXY-2,7-DIAMINO-MITOSENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.78 _cell.angle_gamma 90 _cell.entry_id 1KLL _cell.length_a 44.751 _cell.length_b 60.458 _cell.length_c 44.077 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KLL _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -12.724925 0 42.200216 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 14 A ASP 14 1_555 A N MSE 15 A MSE 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 15 A MSE 15 1_555 A N ALA 16 A ALA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 A C SER 18 A SER 18 1_555 A N MSE 19 A MSE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 19 A MSE 19 1_555 A N GLU 20 A GLU 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C LYS 24 A LYS 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 A C MSE 25 A MSE 25 1_555 A N GLY 26 A GLY 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C14 H16 N4 O5' _chem_comp.formula_weight 320.301 _chem_comp.id MC _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-CIS-1-HYDROXY-2,7-DIAMINO-MITOSENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CARBAMIC ACID 2,6-DIAMINO-1-HYDROXY-5-METHYL-4,7-DIOXO-2,3,4,7-TETRAHYDRO-1H-3A-AZA-CYCLOPENTA[A]INDEN-8-YLMETHYL ESTER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C51 C5 MC sing 205 n n C51 C81 MC doub 206 n y C51 N4 MC sing 207 n y C5 C6 MC sing 208 n n C5 O5 MC doub 209 n n C6 C7 MC doub 210 n n C6 C11 MC sing 211 n n C7 C8 MC sing 212 n n C7 N7 MC sing 213 n n C8 C81 MC sing 214 n n C8 O8 MC doub 215 n n C81 C9 MC sing 216 n y C9 C91 MC doub 217 n y C9 C10 MC sing 218 n n C91 N4 MC sing 219 n y C91 C1 MC sing 220 n n C11 H111 MC sing 221 n n C11 H112 MC sing 222 n n C11 H113 MC sing 223 n n N4 C3 MC sing 224 n n N7 H71 MC sing 225 n n N7 H72 MC sing 226 n n C10 O10 MC sing 227 n n C10 H101 MC sing 228 n n C10 H102 MC sing 229 n n O10 C12 MC sing 230 n n C12 O13 MC doub 231 n n C12 N14 MC sing 232 n n N14 H141 MC sing 233 n n N14 H142 MC sing 234 n n C1 C2 MC sing 235 n n C1 O0 MC sing 236 n n C1 H1 MC sing 237 n n C2 C3 MC sing 238 n n C2 N1 MC sing 239 n n C2 H2 MC sing 240 n n C3 H31 MC sing 241 n n C3 H32 MC sing 242 n n N1 H11 MC sing 243 n n N1 H12 MC sing 244 n n O0 H0 MC sing 245 n n # _atom_sites.entry_id 1KLL _atom_sites.fract_transf_matrix[1][1] 0.022346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006738 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MC A 1 9138 9138 MC MC . C 3 HOH A 1 9139 1 HOH HOH . C 3 HOH A 2 9140 2 HOH HOH . C 3 HOH A 3 9141 3 HOH HOH . C 3 HOH A 4 9142 4 HOH HOH . C 3 HOH A 5 9143 5 HOH HOH . C 3 HOH A 6 9144 6 HOH HOH . C 3 HOH A 7 9145 7 HOH HOH . C 3 HOH A 8 9146 8 HOH HOH . C 3 HOH A 9 9147 9 HOH HOH . C 3 HOH A 10 9148 10 HOH HOH . C 3 HOH A 11 9149 11 HOH HOH . C 3 HOH A 12 9150 12 HOH HOH . C 3 HOH A 13 9151 13 HOH HOH . C 3 HOH A 14 9152 14 HOH HOH . C 3 HOH A 15 9153 15 HOH HOH . C 3 HOH A 16 9154 16 HOH HOH . C 3 HOH A 17 9155 17 HOH HOH . C 3 HOH A 18 9156 18 HOH HOH . C 3 HOH A 19 9157 19 HOH HOH . C 3 HOH A 20 9158 20 HOH HOH . C 3 HOH A 21 9159 21 HOH HOH . C 3 HOH A 22 9160 22 HOH HOH . C 3 HOH A 23 9161 23 HOH HOH . C 3 HOH A 24 9162 24 HOH HOH . C 3 HOH A 25 9163 25 HOH HOH . C 3 HOH A 26 9164 26 HOH HOH . C 3 HOH A 27 9165 27 HOH HOH . C 3 HOH A 28 9166 28 HOH HOH . C 3 HOH A 29 9167 29 HOH HOH . C 3 HOH A 30 9168 30 HOH HOH . C 3 HOH A 31 9169 31 HOH HOH . C 3 HOH A 32 9170 32 HOH HOH . C 3 HOH A 33 9171 33 HOH HOH . C 3 HOH A 34 9172 34 HOH HOH . C 3 HOH A 35 9173 35 HOH HOH . C 3 HOH A 36 9174 36 HOH HOH . C 3 HOH A 37 9175 37 HOH HOH . C 3 HOH A 38 9176 38 HOH HOH . C 3 HOH A 39 9177 39 HOH HOH . C 3 HOH A 40 9178 40 HOH HOH . C 3 HOH A 41 9179 41 HOH HOH . C 3 HOH A 42 9180 42 HOH HOH . C 3 HOH A 43 9181 43 HOH HOH . C 3 HOH A 44 9182 44 HOH HOH . C 3 HOH A 45 9183 45 HOH HOH . C 3 HOH A 46 9184 46 HOH HOH . C 3 HOH A 47 9185 47 HOH HOH . C 3 HOH A 48 9186 48 HOH HOH . C 3 HOH A 49 9187 49 HOH HOH . C 3 HOH A 50 9188 50 HOH HOH . C 3 HOH A 51 9189 51 HOH HOH . C 3 HOH A 52 9190 52 HOH HOH . C 3 HOH A 53 9191 53 HOH HOH . C 3 HOH A 54 9192 54 HOH HOH . C 3 HOH A 55 9193 55 HOH HOH . C 3 HOH A 56 9194 56 HOH HOH . C 3 HOH A 57 9195 57 HOH HOH . C 3 HOH A 58 9196 58 HOH HOH . C 3 HOH A 59 9197 59 HOH HOH . C 3 HOH A 60 9198 60 HOH HOH . C 3 HOH A 61 9199 61 HOH HOH . C 3 HOH A 62 9200 62 HOH HOH . C 3 HOH A 63 9201 63 HOH HOH . C 3 HOH A 64 9202 64 HOH HOH . C 3 HOH A 65 9203 65 HOH HOH . C 3 HOH A 66 9204 66 HOH HOH . C 3 HOH A 67 9205 67 HOH HOH . C 3 HOH A 68 9206 68 HOH HOH . C 3 HOH A 69 9207 69 HOH HOH . C 3 HOH A 70 9208 70 HOH HOH . C 3 HOH A 71 9209 71 HOH HOH . C 3 HOH A 72 9210 72 HOH HOH . C 3 HOH A 73 9211 73 HOH HOH . C 3 HOH A 74 9212 74 HOH HOH . C 3 HOH A 75 9213 75 HOH HOH . C 3 HOH A 76 9214 76 HOH HOH . C 3 HOH A 77 9215 77 HOH HOH . C 3 HOH A 78 9216 78 HOH HOH . C 3 HOH A 79 9217 79 HOH HOH . C 3 HOH A 80 9218 80 HOH HOH . C 3 HOH A 81 9219 81 HOH HOH . C 3 HOH A 82 9220 82 HOH HOH . C 3 HOH A 83 9221 83 HOH HOH . C 3 HOH A 84 9222 84 HOH HOH . C 3 HOH A 85 9223 85 HOH HOH . C 3 HOH A 86 9224 86 HOH HOH . C 3 HOH A 87 9225 87 HOH HOH . C 3 HOH A 88 9226 88 HOH HOH . C 3 HOH A 89 9227 89 HOH HOH . C 3 HOH A 90 9228 90 HOH HOH . C 3 HOH A 91 9229 91 HOH HOH . C 3 HOH A 92 9230 92 HOH HOH . C 3 HOH A 93 9231 93 HOH HOH . C 3 HOH A 94 9232 94 HOH HOH . C 3 HOH A 95 9233 95 HOH HOH . C 3 HOH A 96 9234 96 HOH HOH . C 3 HOH A 97 9235 97 HOH HOH . C 3 HOH A 98 9236 98 HOH HOH . C 3 HOH A 99 9237 99 HOH HOH . C 3 HOH A 100 9238 100 HOH HOH . C 3 HOH A 101 9239 101 HOH HOH . C 3 HOH A 102 9240 102 HOH HOH . C 3 HOH A 103 9241 103 HOH HOH . C 3 HOH A 104 9242 104 HOH HOH . C 3 HOH A 105 9243 105 HOH HOH . C 3 HOH A 106 9244 106 HOH HOH . C 3 HOH A 107 9245 107 HOH HOH . C 3 HOH A 108 9246 108 HOH HOH . C 3 HOH A 109 9247 109 HOH HOH . C 3 HOH A 110 9248 110 HOH HOH . C 3 HOH A 111 9249 111 HOH HOH . C 3 HOH A 112 9250 112 HOH HOH . C 3 HOH A 113 9251 113 HOH HOH . C 3 HOH A 114 9252 114 HOH HOH . C 3 HOH A 115 9253 115 HOH HOH . C 3 HOH A 116 9254 116 HOH HOH . C 3 HOH A 117 9255 117 HOH HOH . C 3 HOH A 118 9256 118 HOH HOH . C 3 HOH A 119 9257 119 HOH HOH . C 3 HOH A 120 9258 120 HOH HOH . C 3 HOH A 121 9259 121 HOH HOH . C 3 HOH A 122 9260 122 HOH HOH . C 3 HOH A 123 9261 123 HOH HOH . C 3 HOH A 124 9262 124 HOH HOH . C 3 HOH A 125 9263 125 HOH HOH . C 3 HOH A 126 9264 126 HOH HOH . C 3 HOH A 127 9265 127 HOH HOH . C 3 HOH A 128 9266 128 HOH HOH . C 3 HOH A 129 9267 129 HOH HOH . C 3 HOH A 130 9268 130 HOH HOH . C 3 HOH A 131 9269 131 HOH HOH . C 3 HOH A 132 9270 132 HOH HOH . C 3 HOH A 133 9271 133 HOH HOH . C 3 HOH A 134 9272 134 HOH HOH . C 3 HOH A 135 9273 135 HOH HOH . C 3 HOH A 136 9274 136 HOH HOH . C 3 HOH A 137 9275 137 HOH HOH . C 3 HOH A 138 9276 138 HOH HOH . C 3 HOH A 139 9277 139 HOH HOH . C 3 HOH A 140 9278 140 HOH HOH . C 3 HOH A 141 9279 141 HOH HOH . C 3 HOH A 142 9280 142 HOH HOH . C 3 HOH A 143 9281 143 HOH HOH . C 3 HOH A 144 9282 144 HOH HOH . C 3 HOH A 145 9283 145 HOH HOH . C 3 HOH A 146 9284 146 HOH HOH . C 3 HOH A 147 9285 147 HOH HOH . C 3 HOH A 148 9286 148 HOH HOH . C 3 HOH A 149 9287 149 HOH HOH . C 3 HOH A 150 9288 150 HOH HOH . C 3 HOH A 151 9289 151 HOH HOH . C 3 HOH A 152 9290 152 HOH HOH . C 3 HOH A 153 9291 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C51 MC . . . B 2 9.375 32.35 20.873 1 14.64 ? C51 MC 9138 A 1 HETATM 2 C C5 MC . . . B 2 10.359 31.911 19.916 1 15.78 ? C5 MC 9138 A 1 HETATM 3 C C6 MC . . . B 2 11.116 32.96 19.221 0.96 17.93 ? C6 MC 9138 A 1 HETATM 4 C C7 MC . . . B 2 10.929 34.267 19.48 0.92 18.11 ? C7 MC 9138 A 1 HETATM 5 C C8 MC . . . B 2 9.882 34.675 20.468 0.96 16.21 ? C8 MC 9138 A 1 HETATM 6 C C81 MC . . . B 2 9.158 33.623 21.102 1 16.85 ? C81 MC 9138 A 1 HETATM 7 C C9 MC . . . B 2 8.054 33.716 22.105 1 14.03 ? C9 MC 9138 A 1 HETATM 8 C C91 MC . . . B 2 7.768 32.47 22.368 1 16.78 ? C91 MC 9138 A 1 HETATM 9 C C11 MC . . . B 2 12.124 32.484 18.199 0.81 19.5 ? C11 MC 9138 A 1 HETATM 10 N N4 MC . . . B 2 8.513 31.598 21.625 1 17.08 ? N4 MC 9138 A 1 HETATM 11 N N7 MC . . . B 2 11.612 35.289 18.838 0.83 21.67 ? N7 MC 9138 A 1 HETATM 12 O O5 MC . . . B 2 10.474 30.708 19.751 0.85 18.53 ? O5 MC 9138 A 1 HETATM 13 O O8 MC . . . B 2 9.716 35.873 20.665 0.85 19.14 ? O8 MC 9138 A 1 HETATM 14 C C10 MC . . . B 2 7.48 34.943 22.601 0.99 17.96 ? C10 MC 9138 A 1 HETATM 15 O O10 MC . . . B 2 6.395 34.518 23.575 0.96 16.83 ? O10 MC 9138 A 1 HETATM 16 C C12 MC . . . B 2 5.994 35.656 24.129 0.93 15.36 ? C12 MC 9138 A 1 HETATM 17 O O13 MC . . . B 2 6.111 36.842 23.884 0.84 18.59 ? O13 MC 9138 A 1 HETATM 18 N N14 MC . . . B 2 5.038 35.304 25.014 0.83 17.94 ? N14 MC 9138 A 1 HETATM 19 C C1 MC . . . B 2 6.794 31.474 23.124 0.81 18.11 ? C1 MC 9138 A 1 HETATM 20 C C2 MC . . . B 2 6.926 30.108 22.743 0.88 20.08 ? C2 MC 9138 A 1 HETATM 21 C C3 MC . . . B 2 8.072 30.132 21.782 0.93 19.31 ? C3 MC 9138 A 1 HETATM 22 N N1 MC . . . B 2 5.95 29.269 22.379 0.87 21.01 ? N1 MC 9138 A 1 HETATM 23 O O0 MC . . . B 2 5.518 31.619 23.052 0.59 27.09 ? O0 MC 9138 A 1 HETATM 24 H H111 MC . . . B 2 12.104 31.525 18.151 1 29.25 ? H111 MC 9138 A 1 HETATM 25 H H112 MC . . . B 2 13.003 32.772 18.457 0.17 29.25 ? H112 MC 9138 A 1 HETATM 26 H H113 MC . . . B 2 11.907 32.852 17.339 0 29.25 ? H113 MC 9138 A 1 HETATM 27 H H71 MC . . . B 2 12.196 35.103 18.234 0 26.01 ? H71 MC 9138 A 1 HETATM 28 H H72 MC . . . B 2 11.452 36.108 19.044 1 26.01 ? H72 MC 9138 A 1 HETATM 29 H H141 MC . . . B 2 4.544 35.908 25.376 0.49 21.53 ? H141 MC 9138 A 1 HETATM 30 H H142 MC . . . B 2 4.922 34.476 25.216 0.93 21.53 ? H142 MC 9138 A 1 HETATM 31 H H1 MC . . . B 2 7.028 31.522 24.075 0 21.73 ? H1 MC 9138 A 1 HETATM 32 H H2 MC . . . B 2 7.305 29.684 23.541 1 24.1 ? H2 MC 9138 A 1 HETATM 33 H H31 MC . . . B 2 7.798 29.77 20.925 0.58 23.18 ? H31 MC 9138 A 1 HETATM 34 H H32 MC . . . B 2 8.805 29.596 22.122 0.65 23.18 ? H32 MC 9138 A 1 HETATM 35 H H11 MC . . . B 2 5.134 29.542 22.358 1 25.21 ? H11 MC 9138 A 1 HETATM 36 H H12 MC . . . B 2 6.138 28.458 22.166 0.11 25.21 ? H12 MC 9138 A 1 HETATM 37 H H0 MC . . . B 2 5.17 30.895 22.887 0 40.63 ? H0 MC 9138 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #