data_1KLM # _model_server_result.job_id 9VYxww7Xgv5J9DvZPbeqqg _model_server_result.datetime_utc '2025-03-25 07:55:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1klm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1KLM # _exptl.entry_id 1KLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.561 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1-(5-METHANSULPHONAMIDO-1H-INDOL-2-YL-CARBONYL)4-[METHYLAMINO)PYRIDINYL]PIPERAZINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KLM _cell.length_a 136.8 _cell.length_b 109.4 _cell.length_c 72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C22 H28 N6 O3 S' _chem_comp.formula_weight 456.561 _chem_comp.id SPP _chem_comp.mon_nstd_flag . _chem_comp.name (1-(5-METHANSULPHONAMIDO-1H-INDOL-2-YL-CARBONYL)4-[METHYLAMINO)PYRIDINYL]PIPERAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Delavirdine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 SPP sing 305 n y C2 N1 SPP doub 306 n y C2 N7 SPP sing 307 n n C3 C4 SPP doub 308 n y C3 N SPP sing 309 n n C4 C5 SPP sing 310 n y C4 H4 SPP sing 311 n n C5 C6 SPP doub 312 n y C5 H5 SPP sing 313 n n C6 N1 SPP sing 314 n y C6 H6 SPP sing 315 n n C8 C9 SPP sing 316 n n C8 N7 SPP sing 317 n n C8 H81 SPP sing 318 n n C8 H82 SPP sing 319 n n C9 N10 SPP sing 320 n n C9 H91 SPP sing 321 n n C9 H92 SPP sing 322 n n C11 C12 SPP sing 323 n n C11 N10 SPP sing 324 n n C11 H111 SPP sing 325 n n C11 H112 SPP sing 326 n n C12 N7 SPP sing 327 n n C12 H121 SPP sing 328 n n C12 H122 SPP sing 329 n n C C14 SPP sing 330 n n C N10 SPP sing 331 n n C O SPP doub 332 n n C14 C15 SPP doub 333 n y C14 N13 SPP sing 334 n y C15 C21 SPP sing 335 n y C15 H15 SPP sing 336 n n C16 C17 SPP doub 337 n y C16 C21 SPP sing 338 n y C16 H16 SPP sing 339 n n C17 C18 SPP sing 340 n y C17 ND SPP sing 341 n n C18 C19 SPP doub 342 n y C18 H18 SPP sing 343 n n C19 C20 SPP sing 344 n y C19 H19 SPP sing 345 n n C20 C21 SPP doub 346 n y C20 N13 SPP sing 347 n y CA CB SPP sing 348 n n CA CC SPP sing 349 n n CA N SPP sing 350 n n CA HA SPP sing 351 n n CB HB1 SPP sing 352 n n CB HB2 SPP sing 353 n n CB HB3 SPP sing 354 n n CC HC1 SPP sing 355 n n CC HC2 SPP sing 356 n n CC HC3 SPP sing 357 n n CE S SPP sing 358 n n CE HE1 SPP sing 359 n n CE HE2 SPP sing 360 n n CE HE3 SPP sing 361 n n N HN SPP sing 362 n n N13 HN3 SPP sing 363 n n ND S SPP sing 364 n n ND HND SPP sing 365 n n OS1 S SPP doub 366 n n OS2 S SPP doub 367 n n # _atom_sites.entry_id 1KLM _atom_sites.fract_transf_matrix[1][1] 0.00731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SPP A 1 999 999 SPP SPP . D 4 HOH A 1 1000 1000 HOH HOH . D 4 HOH A 2 1001 1001 HOH HOH . D 4 HOH A 3 1002 1002 HOH HOH . D 4 HOH A 4 1003 1003 HOH HOH . D 4 HOH A 5 1004 1004 HOH HOH . D 4 HOH A 6 1005 1005 HOH HOH . D 4 HOH A 7 1006 1006 HOH HOH . D 4 HOH A 8 1007 1007 HOH HOH . D 4 HOH A 9 1008 1008 HOH HOH . D 4 HOH A 10 1009 1009 HOH HOH . D 4 HOH A 11 1010 1010 HOH HOH . D 4 HOH A 12 1011 1011 HOH HOH . D 4 HOH A 13 1012 1012 HOH HOH . D 4 HOH A 14 1013 1013 HOH HOH . D 4 HOH A 15 1014 1014 HOH HOH . D 4 HOH A 16 1015 1015 HOH HOH . D 4 HOH A 17 1016 1016 HOH HOH . D 4 HOH A 18 1017 1017 HOH HOH . D 4 HOH A 19 1018 1018 HOH HOH . D 4 HOH A 20 1019 1019 HOH HOH . D 4 HOH A 21 1020 1020 HOH HOH . D 4 HOH A 22 1021 1021 HOH HOH . D 4 HOH A 23 1022 1022 HOH HOH . D 4 HOH A 24 1023 1023 HOH HOH . D 4 HOH A 25 1024 1024 HOH HOH . D 4 HOH A 26 1025 1025 HOH HOH . D 4 HOH A 27 1026 1026 HOH HOH . D 4 HOH A 28 1027 1027 HOH HOH . D 4 HOH A 29 1028 1028 HOH HOH . D 4 HOH A 30 1029 1029 HOH HOH . D 4 HOH A 31 1030 1030 HOH HOH . D 4 HOH A 32 1031 1031 HOH HOH . D 4 HOH A 33 1032 1032 HOH HOH . D 4 HOH A 34 1033 1033 HOH HOH . D 4 HOH A 35 1034 1034 HOH HOH . D 4 HOH A 36 1035 1035 HOH HOH . D 4 HOH A 37 1036 1036 HOH HOH . D 4 HOH A 38 1037 1037 HOH HOH . D 4 HOH A 39 1038 1038 HOH HOH . D 4 HOH A 40 1039 1039 HOH HOH . E 4 HOH B 1 1040 1040 HOH HOH . E 4 HOH B 2 1041 1041 HOH HOH . E 4 HOH B 3 1042 1042 HOH HOH . E 4 HOH B 4 1043 1043 HOH HOH . E 4 HOH B 5 1044 1044 HOH HOH . E 4 HOH B 6 1045 1045 HOH HOH . E 4 HOH B 7 1046 1046 HOH HOH . E 4 HOH B 8 1047 1047 HOH HOH . E 4 HOH B 9 1048 1048 HOH HOH . E 4 HOH B 10 1049 1049 HOH HOH . E 4 HOH B 11 1050 1050 HOH HOH . E 4 HOH B 12 1051 1051 HOH HOH . E 4 HOH B 13 1052 1052 HOH HOH . E 4 HOH B 14 1053 1053 HOH HOH . E 4 HOH B 15 1054 1054 HOH HOH . E 4 HOH B 16 1055 1055 HOH HOH . E 4 HOH B 17 1056 1056 HOH HOH . E 4 HOH B 18 1057 1057 HOH HOH . E 4 HOH B 19 1058 1058 HOH HOH . E 4 HOH B 20 1059 1059 HOH HOH . E 4 HOH B 21 1060 1060 HOH HOH . E 4 HOH B 22 1061 1061 HOH HOH . E 4 HOH B 23 1062 1062 HOH HOH . E 4 HOH B 24 1063 1063 HOH HOH . E 4 HOH B 25 1064 1064 HOH HOH . E 4 HOH B 26 1065 1065 HOH HOH . E 4 HOH B 27 1066 1066 HOH HOH . E 4 HOH B 28 1067 1067 HOH HOH . E 4 HOH B 29 1068 1068 HOH HOH . E 4 HOH B 30 1069 1069 HOH HOH . E 4 HOH B 31 1070 1070 HOH HOH . E 4 HOH B 32 1071 1071 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 SPP . . . C 3 -1.402 -35.207 23.579 1 37.95 ? C2 SPP 999 A 1 HETATM 2 C C3 SPP . . . C 3 -0.703 -34.653 24.677 1 41.92 ? C3 SPP 999 A 1 HETATM 3 C C4 SPP . . . C 3 0.249 -35.458 25.284 1 48.77 ? C4 SPP 999 A 1 HETATM 4 C C5 SPP . . . C 3 0.484 -36.744 24.83 1 52.6 ? C5 SPP 999 A 1 HETATM 5 C C6 SPP . . . C 3 -0.267 -37.188 23.733 1 49.09 ? C6 SPP 999 A 1 HETATM 6 C C8 SPP . . . C 3 -2.554 -34.603 21.486 1 44.25 ? C8 SPP 999 A 1 HETATM 7 C C9 SPP . . . C 3 -3.394 -33.498 20.904 1 52.92 ? C9 SPP 999 A 1 HETATM 8 C C11 SPP . . . C 3 -4.68 -33.409 22.967 1 55.35 ? C11 SPP 999 A 1 HETATM 9 C C12 SPP . . . C 3 -3.727 -34.405 23.585 1 49.52 ? C12 SPP 999 A 1 HETATM 10 C C SPP . . . C 3 -5.738 -34.157 20.845 1 68.6 ? C SPP 999 A 1 HETATM 11 C C14 SPP . . . C 3 -7.064 -34.323 21.558 1 78.77 ? C14 SPP 999 A 1 HETATM 12 C C15 SPP . . . C 3 -7.666 -33.667 22.609 1 82.72 ? C15 SPP 999 A 1 HETATM 13 C C16 SPP . . . C 3 -9.945 -34.098 23.799 1 102.35 ? C16 SPP 999 A 1 HETATM 14 C C17 SPP . . . C 3 -11.042 -34.956 23.754 1 111.43 ? C17 SPP 999 A 1 HETATM 15 C C18 SPP . . . C 3 -11.14 -35.985 22.828 1 111.74 ? C18 SPP 999 A 1 HETATM 16 C C19 SPP . . . C 3 -10.133 -36.222 21.899 1 106.99 ? C19 SPP 999 A 1 HETATM 17 C C20 SPP . . . C 3 -9.012 -35.367 21.929 1 95.34 ? C20 SPP 999 A 1 HETATM 18 C C21 SPP . . . C 3 -8.912 -34.32 22.865 1 91.67 ? C21 SPP 999 A 1 HETATM 19 C CA SPP . . . C 3 -0.15 -32.568 26.056 1 50.12 ? CA SPP 999 A 1 HETATM 20 C CB SPP . . . C 3 1.312 -32.568 25.673 1 51.28 ? CB SPP 999 A 1 HETATM 21 C CC SPP . . . C 3 -0.334 -33.081 27.452 1 53.97 ? CC SPP 999 A 1 HETATM 22 C CE SPP . . . C 3 -11.057 -34.295 27.111 1 113.99 ? CE SPP 999 A 1 HETATM 23 N N SPP . . . C 3 -0.972 -33.34 25.097 1 50.87 ? N SPP 999 A 1 HETATM 24 N N1 SPP . . . C 3 -1.2 -36.439 23.118 1 33.23 ? N1 SPP 999 A 1 HETATM 25 N N7 SPP . . . C 3 -2.386 -34.41 22.947 1 44.05 ? N7 SPP 999 A 1 HETATM 26 N N10 SPP . . . C 3 -4.723 -33.631 21.514 1 56.51 ? N10 SPP 999 A 1 HETATM 27 N N13 SPP . . . C 3 -7.887 -35.344 21.149 1 87.71 ? N13 SPP 999 A 1 HETATM 28 N ND SPP . . . C 3 -12.094 -34.78 24.656 1 117.68 ? ND SPP 999 A 1 HETATM 29 O O SPP . . . C 3 -5.641 -34.523 19.646 1 63.84 ? O SPP 999 A 1 HETATM 30 O OS1 SPP . . . C 3 -13.512 -33.754 26.411 1 125.37 ? OS1 SPP 999 A 1 HETATM 31 O OS2 SPP . . . C 3 -11.745 -32.433 25.418 1 127.29 ? OS2 SPP 999 A 1 HETATM 32 S S SPP . . . C 3 -12.185 -33.714 25.877 1 124.51 ? S SPP 999 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #