data_1KM8 # _model_server_result.job_id 7aIMnqMlCZE-9SE_4PSU1g _model_server_result.datetime_utc '2025-02-05 13:54:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1km8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1KM8 # _exptl.entry_id 1KM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KM8 _cell.length_a 30.122 _cell.length_b 45.645 _cell.length_c 68.603 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 34 A CYS 34 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 52 A CYS 52 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 93 A CYS 93 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 276 n n P O2 PO4 sing 277 n n P O3 PO4 sing 278 n n P O4 PO4 sing 279 n n # _atom_sites.entry_id 1KM8 _atom_sites.fract_transf_matrix[1][1] 0.033198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 501 501 PO4 PO4 . C 3 HOH A 1 601 601 HOH TIP . C 3 HOH A 2 602 602 HOH TIP . C 3 HOH A 3 603 603 HOH TIP . C 3 HOH A 4 604 604 HOH TIP . C 3 HOH A 5 605 605 HOH TIP . C 3 HOH A 6 606 606 HOH TIP . C 3 HOH A 7 607 607 HOH TIP . C 3 HOH A 8 609 609 HOH TIP . C 3 HOH A 9 610 610 HOH TIP . C 3 HOH A 10 611 611 HOH TIP . C 3 HOH A 11 612 612 HOH TIP . C 3 HOH A 12 613 613 HOH TIP . C 3 HOH A 13 614 614 HOH TIP . C 3 HOH A 14 615 615 HOH TIP . C 3 HOH A 15 617 617 HOH TIP . C 3 HOH A 16 618 618 HOH TIP . C 3 HOH A 17 619 619 HOH TIP . C 3 HOH A 18 620 620 HOH TIP . C 3 HOH A 19 621 621 HOH TIP . C 3 HOH A 20 622 622 HOH TIP . C 3 HOH A 21 623 623 HOH TIP . C 3 HOH A 22 624 624 HOH TIP . C 3 HOH A 23 626 626 HOH TIP . C 3 HOH A 24 627 627 HOH TIP . C 3 HOH A 25 628 628 HOH TIP . C 3 HOH A 26 629 629 HOH TIP . C 3 HOH A 27 630 630 HOH TIP . C 3 HOH A 28 632 632 HOH TIP . C 3 HOH A 29 634 634 HOH TIP . C 3 HOH A 30 636 636 HOH TIP . C 3 HOH A 31 637 637 HOH TIP . C 3 HOH A 32 638 638 HOH TIP . C 3 HOH A 33 639 639 HOH TIP . C 3 HOH A 34 640 640 HOH TIP . C 3 HOH A 35 641 641 HOH TIP . C 3 HOH A 36 642 642 HOH TIP . C 3 HOH A 37 643 643 HOH TIP . C 3 HOH A 38 644 644 HOH TIP . C 3 HOH A 39 647 647 HOH TIP . C 3 HOH A 40 649 649 HOH TIP . C 3 HOH A 41 651 651 HOH TIP . C 3 HOH A 42 654 654 HOH TIP . C 3 HOH A 43 655 655 HOH TIP . C 3 HOH A 44 659 659 HOH TIP . C 3 HOH A 45 660 660 HOH TIP . C 3 HOH A 46 668 668 HOH TIP . C 3 HOH A 47 674 674 HOH TIP . C 3 HOH A 48 676 676 HOH TIP . C 3 HOH A 49 686 686 HOH TIP . C 3 HOH A 50 687 687 HOH TIP . C 3 HOH A 51 692 692 HOH TIP . C 3 HOH A 52 693 693 HOH TIP . C 3 HOH A 53 695 695 HOH TIP . C 3 HOH A 54 697 697 HOH TIP . C 3 HOH A 55 699 699 HOH TIP . C 3 HOH A 56 700 700 HOH TIP . C 3 HOH A 57 702 702 HOH TIP . C 3 HOH A 58 703 703 HOH TIP . C 3 HOH A 59 724 724 HOH TIP . C 3 HOH A 60 731 731 HOH TIP . C 3 HOH A 61 733 733 HOH TIP . C 3 HOH A 62 739 739 HOH TIP . C 3 HOH A 63 756 756 HOH TIP . C 3 HOH A 64 772 772 HOH TIP . C 3 HOH A 65 790 790 HOH TIP . C 3 HOH A 66 808 808 HOH TIP . C 3 HOH A 67 811 811 HOH TIP . C 3 HOH A 68 814 814 HOH TIP . C 3 HOH A 69 815 815 HOH TIP . C 3 HOH A 70 822 822 HOH TIP . C 3 HOH A 71 823 823 HOH TIP . C 3 HOH A 72 836 836 HOH TIP . C 3 HOH A 73 860 860 HOH TIP . C 3 HOH A 74 862 862 HOH TIP . C 3 HOH A 75 863 863 HOH TIP . C 3 HOH A 76 911 911 HOH TIP . C 3 HOH A 77 915 915 HOH TIP . C 3 HOH A 78 916 916 HOH TIP . C 3 HOH A 79 942 942 HOH TIP . C 3 HOH A 80 949 949 HOH TIP . C 3 HOH A 81 950 950 HOH TIP . C 3 HOH A 82 951 951 HOH TIP . C 3 HOH A 83 952 952 HOH TIP . C 3 HOH A 84 954 954 HOH TIP . C 3 HOH A 85 955 955 HOH TIP . C 3 HOH A 86 956 956 HOH TIP . C 3 HOH A 87 957 957 HOH TIP . C 3 HOH A 88 958 958 HOH TIP . C 3 HOH A 89 959 959 HOH TIP . C 3 HOH A 90 963 963 HOH TIP . C 3 HOH A 91 964 964 HOH TIP . C 3 HOH A 92 965 965 HOH TIP . C 3 HOH A 93 968 968 HOH TIP . C 3 HOH A 94 969 969 HOH TIP . C 3 HOH A 95 970 970 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 15.507 7.751 21.464 1 23.31 ? P PO4 501 A 1 HETATM 2 O O1 PO4 . . . B 2 14.03 7.662 21.393 1 21.71 ? O1 PO4 501 A 1 HETATM 3 O O2 PO4 . . . B 2 16.111 6.664 20.645 1 22.57 ? O2 PO4 501 A 1 HETATM 4 O O3 PO4 . . . B 2 15.938 7.607 22.88 1 23.72 ? O3 PO4 501 A 1 HETATM 5 O O4 PO4 . . . B 2 15.953 9.07 20.939 1 23.76 ? O4 PO4 501 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #