data_1KM9
#
_model_server_result.job_id            GTcaAPIjuwj2X3-NMBKlsw 
_model_server_result.datetime_utc      '2025-09-01 00:30:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1km9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    1KM9 
#
_exptl.entry_id    1KM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KM9 
_cell.length_a            42.806 
_cell.length_b            45.918 
_cell.length_c            57.459 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 34 A CYS 34 1_555 A SG CYS 81 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 52 A CYS 52 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 93 A CYS 93 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASN 2 A ASN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 276 n n 
P O2 PO4 sing 277 n n 
P O3 PO4 sing 278 n n 
P O4 PO4 sing 279 n n 
#
_atom_sites.entry_id                     1KM9 
_atom_sites.fract_transf_matrix[1][1]    0.023361 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021778 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017404 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 501 PO4 PO4 . 
C 2 PO4 A 1 502 502 PO4 PO4 . 
D 2 PO4 A 1 503 503 PO4 PO4 . 
E 3 HOH A 1 602 602 HOH TIP . 
E 3 HOH A 2 603 603 HOH TIP . 
E 3 HOH A 3 604 604 HOH TIP . 
E 3 HOH A 4 605 605 HOH TIP . 
E 3 HOH A 5 606 606 HOH TIP . 
E 3 HOH A 6 607 607 HOH TIP . 
E 3 HOH A 7 608 608 HOH TIP . 
E 3 HOH A 8 609 609 HOH TIP . 
E 3 HOH A 9 610 610 HOH TIP . 
E 3 HOH A 10 611 611 HOH TIP . 
E 3 HOH A 11 612 612 HOH TIP . 
E 3 HOH A 12 613 613 HOH TIP . 
E 3 HOH A 13 614 614 HOH TIP . 
E 3 HOH A 14 615 615 HOH TIP . 
E 3 HOH A 15 616 616 HOH TIP . 
E 3 HOH A 16 618 618 HOH TIP . 
E 3 HOH A 17 619 619 HOH TIP . 
E 3 HOH A 18 620 620 HOH TIP . 
E 3 HOH A 19 622 622 HOH TIP . 
E 3 HOH A 20 623 623 HOH TIP . 
E 3 HOH A 21 627 627 HOH TIP . 
E 3 HOH A 22 628 628 HOH TIP . 
E 3 HOH A 23 629 629 HOH TIP . 
E 3 HOH A 24 630 630 HOH TIP . 
E 3 HOH A 25 631 631 HOH TIP . 
E 3 HOH A 26 632 632 HOH TIP . 
E 3 HOH A 27 633 633 HOH TIP . 
E 3 HOH A 28 634 634 HOH TIP . 
E 3 HOH A 29 635 635 HOH TIP . 
E 3 HOH A 30 636 636 HOH TIP . 
E 3 HOH A 31 639 639 HOH TIP . 
E 3 HOH A 32 640 640 HOH TIP . 
E 3 HOH A 33 641 641 HOH TIP . 
E 3 HOH A 34 642 642 HOH TIP . 
E 3 HOH A 35 643 643 HOH TIP . 
E 3 HOH A 36 644 644 HOH TIP . 
E 3 HOH A 37 645 645 HOH TIP . 
E 3 HOH A 38 646 646 HOH TIP . 
E 3 HOH A 39 649 649 HOH TIP . 
E 3 HOH A 40 655 655 HOH TIP . 
E 3 HOH A 41 657 657 HOH TIP . 
E 3 HOH A 42 660 660 HOH TIP . 
E 3 HOH A 43 665 665 HOH TIP . 
E 3 HOH A 44 666 666 HOH TIP . 
E 3 HOH A 45 668 668 HOH TIP . 
E 3 HOH A 46 669 669 HOH TIP . 
E 3 HOH A 47 671 671 HOH TIP . 
E 3 HOH A 48 673 673 HOH TIP . 
E 3 HOH A 49 675 675 HOH TIP . 
E 3 HOH A 50 678 678 HOH TIP . 
E 3 HOH A 51 681 681 HOH TIP . 
E 3 HOH A 52 685 685 HOH TIP . 
E 3 HOH A 53 688 688 HOH TIP . 
E 3 HOH A 54 689 689 HOH TIP . 
E 3 HOH A 55 690 690 HOH TIP . 
E 3 HOH A 56 695 695 HOH TIP . 
E 3 HOH A 57 697 697 HOH TIP . 
E 3 HOH A 58 702 702 HOH TIP . 
E 3 HOH A 59 705 705 HOH TIP . 
E 3 HOH A 60 706 706 HOH TIP . 
E 3 HOH A 61 708 708 HOH TIP . 
E 3 HOH A 62 709 709 HOH TIP . 
E 3 HOH A 63 711 711 HOH TIP . 
E 3 HOH A 64 713 713 HOH TIP . 
E 3 HOH A 65 715 715 HOH TIP . 
E 3 HOH A 66 722 722 HOH TIP . 
E 3 HOH A 67 723 723 HOH TIP . 
E 3 HOH A 68 725 725 HOH TIP . 
E 3 HOH A 69 732 732 HOH TIP . 
E 3 HOH A 70 733 733 HOH TIP . 
E 3 HOH A 71 734 734 HOH TIP . 
E 3 HOH A 72 740 740 HOH TIP . 
E 3 HOH A 73 741 741 HOH TIP . 
E 3 HOH A 74 743 743 HOH TIP . 
E 3 HOH A 75 745 745 HOH TIP . 
E 3 HOH A 76 748 748 HOH TIP . 
E 3 HOH A 77 750 750 HOH TIP . 
E 3 HOH A 78 751 751 HOH TIP . 
E 3 HOH A 79 752 752 HOH TIP . 
E 3 HOH A 80 753 753 HOH TIP . 
E 3 HOH A 81 754 754 HOH TIP . 
E 3 HOH A 82 755 755 HOH TIP . 
E 3 HOH A 83 767 767 HOH TIP . 
E 3 HOH A 84 768 768 HOH TIP . 
E 3 HOH A 85 774 774 HOH TIP . 
E 3 HOH A 86 795 795 HOH TIP . 
E 3 HOH A 87 817 817 HOH TIP . 
E 3 HOH A 88 818 818 HOH TIP . 
E 3 HOH A 89 819 819 HOH TIP . 
E 3 HOH A 90 820 820 HOH TIP . 
E 3 HOH A 91 821 821 HOH TIP . 
E 3 HOH A 92 822 822 HOH TIP . 
E 3 HOH A 93 825 825 HOH TIP . 
E 3 HOH A 94 826 826 HOH TIP . 
E 3 HOH A 95 828 828 HOH TIP . 
E 3 HOH A 96 830 830 HOH TIP . 
E 3 HOH A 97 831 831 HOH TIP . 
E 3 HOH A 98 833 833 HOH TIP . 
E 3 HOH A 99 836 836 HOH TIP . 
E 3 HOH A 100 837 837 HOH TIP . 
E 3 HOH A 101 838 838 HOH TIP . 
E 3 HOH A 102 840 840 HOH TIP . 
E 3 HOH A 103 842 842 HOH TIP . 
E 3 HOH A 104 845 845 HOH TIP . 
E 3 HOH A 105 846 846 HOH TIP . 
E 3 HOH A 106 847 847 HOH TIP . 
E 3 HOH A 107 848 848 HOH TIP . 
E 3 HOH A 108 850 850 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . C 2 6.845 -19.507 26.714 1 58.17 ? P PO4 502 A 1 
HETATM 2 O O1 PO4 . . . C 2 7.263 -18.1 26.507 1 57.15 ? O1 PO4 502 A 1 
HETATM 3 O O2 PO4 . . . C 2 5.375 -19.562 26.914 1 58.27 ? O2 PO4 502 A 1 
HETATM 4 O O3 PO4 . . . C 2 7.529 -20.057 27.913 1 57.73 ? O3 PO4 502 A 1 
HETATM 5 O O4 PO4 . . . C 2 7.214 -20.313 25.521 1 59.67 ? O4 PO4 502 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           413 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#