data_1KME # _model_server_result.job_id A47HOjT236faFXBSViEw8A _model_server_result.datetime_utc '2024-12-22 06:56:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1KME # _exptl.entry_id 1KME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.734 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,10,23-TRIMETHYL-TETRACOSANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.58 _cell.angle_gamma 90 _cell.entry_id 1KME _cell.length_a 45 _cell.length_b 108.9 _cell.length_c 55.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KME _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B NZ LYS 216 B LYS 216 1_555 H C15 RET . B RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C27 H56' _chem_comp.formula_weight 380.734 _chem_comp.id SQU _chem_comp.mon_nstd_flag . _chem_comp.name 2,10,23-TRIMETHYL-TETRACOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SQU sing 329 n n C1 H11 SQU sing 330 n n C1 H12A SQU sing 331 n n C1 H13 SQU sing 332 n n C2 C3 SQU sing 333 n n C2 C4 SQU sing 334 n n C2 H2 SQU sing 335 n n C3 H31 SQU sing 336 n n C3 H32 SQU sing 337 n n C3 H33 SQU sing 338 n n C4 C5 SQU sing 339 n n C4 H41 SQU sing 340 n n C4 H42 SQU sing 341 n n C5 C6 SQU sing 342 n n C5 H51 SQU sing 343 n n C5 H52 SQU sing 344 n n C6 C7 SQU sing 345 n n C6 H61 SQU sing 346 n n C6 H62 SQU sing 347 n n C7 C9 SQU sing 348 n n C7 H71 SQU sing 349 n n C7 H72 SQU sing 350 n n C9 C10 SQU sing 351 n n C9 H91 SQU sing 352 n n C9 H92 SQU sing 353 n n C10 C11 SQU sing 354 n n C10 H101 SQU sing 355 n n C10 H102 SQU sing 356 n n C11 C12 SQU sing 357 n n C11 H111 SQU sing 358 n n C11 H112 SQU sing 359 n n C12 C13 SQU sing 360 n n C12 C14 SQU sing 361 n n C12 H12 SQU sing 362 n n C13 H131 SQU sing 363 n n C13 H132 SQU sing 364 n n C13 H133 SQU sing 365 n n C14 C15 SQU sing 366 n n C14 H141 SQU sing 367 n n C14 H142 SQU sing 368 n n C15 C16 SQU sing 369 n n C15 H151 SQU sing 370 n n C15 H152 SQU sing 371 n n C16 C17 SQU sing 372 n n C16 H161 SQU sing 373 n n C16 H162 SQU sing 374 n n C17 C18 SQU sing 375 n n C17 H171 SQU sing 376 n n C17 H172 SQU sing 377 n n C18 C20 SQU sing 378 n n C18 H181 SQU sing 379 n n C18 H182 SQU sing 380 n n C20 C21 SQU sing 381 n n C20 H201 SQU sing 382 n n C20 H202 SQU sing 383 n n C21 C22 SQU sing 384 n n C21 H211 SQU sing 385 n n C21 H212 SQU sing 386 n n C22 C23 SQU sing 387 n n C22 H221 SQU sing 388 n n C22 H222 SQU sing 389 n n C23 C25 SQU sing 390 n n C23 H231 SQU sing 391 n n C23 H232 SQU sing 392 n n C25 C26 SQU sing 393 n n C25 H251 SQU sing 394 n n C25 H252 SQU sing 395 n n C26 C27 SQU sing 396 n n C26 H261 SQU sing 397 n n C26 H262 SQU sing 398 n n C27 C28 SQU sing 399 n n C27 H271 SQU sing 400 n n C27 H272 SQU sing 401 n n C28 C29 SQU sing 402 n n C28 C30 SQU sing 403 n n C28 H28 SQU sing 404 n n C29 H291 SQU sing 405 n n C29 H292 SQU sing 406 n n C29 H293 SQU sing 407 n n C30 H301 SQU sing 408 n n C30 H302 SQU sing 409 n n C30 H303 SQU sing 410 n n # _atom_sites.entry_id 1KME _atom_sites.fract_transf_matrix[1][1] 0.022222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 SQU A 1 401 401 SQU SQU . E 3 SQU A 1 402 402 SQU SQU . F 4 BGC B 1 501 501 BGC BGC . G 4 BGC B 1 502 502 BGC BGC . H 2 RET B 1 302 302 RET RET . I 5 HOH A 1 403 403 HOH HOH . I 5 HOH A 2 404 404 HOH HOH . I 5 HOH A 3 405 405 HOH HOH . I 5 HOH A 4 406 406 HOH HOH . I 5 HOH A 5 407 407 HOH HOH . I 5 HOH A 6 408 408 HOH HOH . I 5 HOH A 7 409 409 HOH HOH . I 5 HOH A 8 410 410 HOH HOH . I 5 HOH A 9 411 411 HOH HOH . I 5 HOH A 10 412 412 HOH HOH . I 5 HOH A 11 413 413 HOH HOH . I 5 HOH A 12 414 414 HOH HOH . I 5 HOH A 13 415 415 HOH HOH . I 5 HOH A 14 416 416 HOH HOH . I 5 HOH A 15 417 417 HOH HOH . I 5 HOH A 16 418 418 HOH HOH . I 5 HOH A 17 419 419 HOH HOH . I 5 HOH A 18 420 420 HOH HOH . I 5 HOH A 19 421 421 HOH HOH . I 5 HOH A 20 422 422 HOH HOH . I 5 HOH A 21 423 423 HOH HOH . I 5 HOH A 22 424 424 HOH HOH . I 5 HOH A 23 425 425 HOH HOH . I 5 HOH A 24 426 426 HOH HOH . I 5 HOH A 25 427 427 HOH HOH . I 5 HOH A 26 428 428 HOH HOH . I 5 HOH A 27 429 429 HOH HOH . I 5 HOH A 28 430 430 HOH HOH . I 5 HOH A 29 431 431 HOH HOH . I 5 HOH A 30 432 432 HOH HOH . I 5 HOH A 31 433 433 HOH HOH . I 5 HOH A 32 434 434 HOH HOH . I 5 HOH A 33 435 435 HOH HOH . I 5 HOH A 34 436 436 HOH HOH . I 5 HOH A 35 437 437 HOH HOH . I 5 HOH A 36 438 438 HOH HOH . I 5 HOH A 37 439 439 HOH HOH . I 5 HOH A 38 440 440 HOH HOH . I 5 HOH A 39 441 441 HOH HOH . I 5 HOH A 40 442 442 HOH HOH . I 5 HOH A 41 443 443 HOH HOH . I 5 HOH A 42 444 444 HOH HOH . I 5 HOH A 43 445 445 HOH HOH . I 5 HOH A 44 446 446 HOH HOH . I 5 HOH A 45 447 447 HOH HOH . I 5 HOH A 46 448 448 HOH HOH . I 5 HOH A 47 449 449 HOH HOH . I 5 HOH A 48 450 450 HOH HOH . I 5 HOH A 49 451 451 HOH HOH . I 5 HOH A 50 452 452 HOH HOH . I 5 HOH A 51 453 453 HOH HOH . I 5 HOH A 52 454 454 HOH HOH . I 5 HOH A 53 455 455 HOH HOH . J 5 HOH B 1 503 503 HOH HOH . J 5 HOH B 2 504 504 HOH HOH . J 5 HOH B 3 505 505 HOH HOH . J 5 HOH B 4 506 506 HOH HOH . J 5 HOH B 5 507 507 HOH HOH . J 5 HOH B 6 508 508 HOH HOH . J 5 HOH B 7 509 509 HOH HOH . J 5 HOH B 8 510 510 HOH HOH . J 5 HOH B 9 511 511 HOH HOH . J 5 HOH B 10 512 512 HOH HOH . J 5 HOH B 11 513 513 HOH HOH . J 5 HOH B 12 514 514 HOH HOH . J 5 HOH B 13 515 515 HOH HOH . J 5 HOH B 14 516 516 HOH HOH . J 5 HOH B 15 517 517 HOH HOH . J 5 HOH B 16 518 518 HOH HOH . J 5 HOH B 17 519 519 HOH HOH . J 5 HOH B 18 520 520 HOH HOH . J 5 HOH B 19 521 521 HOH HOH . J 5 HOH B 20 522 522 HOH HOH . J 5 HOH B 21 523 523 HOH HOH . J 5 HOH B 22 524 524 HOH HOH . J 5 HOH B 23 525 525 HOH HOH . J 5 HOH B 24 526 526 HOH HOH . J 5 HOH B 25 527 527 HOH HOH . J 5 HOH B 26 528 528 HOH HOH . J 5 HOH B 27 529 529 HOH HOH . J 5 HOH B 28 530 530 HOH HOH . J 5 HOH B 29 531 531 HOH HOH . J 5 HOH B 30 532 532 HOH HOH . J 5 HOH B 31 533 533 HOH HOH . J 5 HOH B 32 534 534 HOH HOH . J 5 HOH B 33 535 535 HOH HOH . J 5 HOH B 34 536 536 HOH HOH . J 5 HOH B 35 537 537 HOH HOH . J 5 HOH B 36 538 538 HOH HOH . J 5 HOH B 37 539 539 HOH HOH . J 5 HOH B 38 540 540 HOH HOH . J 5 HOH B 39 541 541 HOH HOH . J 5 HOH B 40 542 542 HOH HOH . J 5 HOH B 41 543 543 HOH HOH . J 5 HOH B 42 544 544 HOH HOH . J 5 HOH B 43 545 545 HOH HOH . J 5 HOH B 44 546 546 HOH HOH . J 5 HOH B 45 547 547 HOH HOH . J 5 HOH B 46 548 548 HOH HOH . J 5 HOH B 47 549 549 HOH HOH . J 5 HOH B 48 550 550 HOH HOH . J 5 HOH B 49 551 551 HOH HOH . J 5 HOH B 50 552 552 HOH HOH . J 5 HOH B 51 553 553 HOH HOH . J 5 HOH B 52 554 554 HOH HOH . J 5 HOH B 53 555 555 HOH HOH . J 5 HOH B 54 556 556 HOH HOH . J 5 HOH B 55 557 557 HOH HOH . J 5 HOH B 56 558 558 HOH HOH . J 5 HOH B 57 559 559 HOH HOH . J 5 HOH B 58 560 560 HOH HOH . J 5 HOH B 59 561 561 HOH HOH . J 5 HOH B 60 562 562 HOH HOH . J 5 HOH B 61 563 563 HOH HOH . J 5 HOH B 62 564 564 HOH HOH . J 5 HOH B 63 565 565 HOH HOH . J 5 HOH B 64 566 566 HOH HOH . J 5 HOH B 65 567 567 HOH HOH . J 5 HOH B 66 568 568 HOH HOH . J 5 HOH B 67 569 569 HOH HOH . J 5 HOH B 68 570 570 HOH HOH . J 5 HOH B 69 571 571 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SQU . . . D 3 38.417 51.073 20.867 1 40.99 ? C1 SQU 401 A 1 HETATM 2 C C2 SQU . . . D 3 39.034 49.696 21.071 1 40.2 ? C2 SQU 401 A 1 HETATM 3 C C4 SQU . . . D 3 38.301 48.695 20.204 1 39 ? C4 SQU 401 A 1 HETATM 4 C C5 SQU . . . D 3 38.852 47.282 20.347 1 39.62 ? C5 SQU 401 A 1 HETATM 5 C C6 SQU . . . D 3 40.314 47.161 19.949 1 39.83 ? C6 SQU 401 A 1 HETATM 6 C C7 SQU . . . D 3 40.783 45.717 20.107 1 41.35 ? C7 SQU 401 A 1 HETATM 7 C C9 SQU . . . D 3 42.247 45.54 19.718 1 42.13 ? C9 SQU 401 A 1 HETATM 8 C C10 SQU . . . D 3 42.773 44.091 19.868 1 43.15 ? C10 SQU 401 A 1 HETATM 9 C C11 SQU . . . D 3 42.083 43.016 18.995 1 43.66 ? C11 SQU 401 A 1 HETATM 10 C C12 SQU . . . D 3 40.598 42.855 19.264 1 44.1 ? C12 SQU 401 A 1 HETATM 11 C C14 SQU . . . D 3 40.284 42.429 20.691 1 44.17 ? C14 SQU 401 A 1 HETATM 12 C C15 SQU . . . D 3 38.782 42.362 20.847 1 44.58 ? C15 SQU 401 A 1 HETATM 13 C C16 SQU . . . D 3 38.12 41.349 19.915 1 43.87 ? C16 SQU 401 A 1 HETATM 14 C C17 SQU . . . D 3 38.516 39.909 20.189 1 42.71 ? C17 SQU 401 A 1 HETATM 15 C C18 SQU . . . D 3 38.082 39.57 21.606 1 42.21 ? C18 SQU 401 A 1 HETATM 16 C C20 SQU . . . D 3 38.345 38.138 22.018 1 41.12 ? C20 SQU 401 A 1 HETATM 17 C C21 SQU . . . D 3 37.595 37.171 21.127 1 40.75 ? C21 SQU 401 A 1 HETATM 18 C C22 SQU . . . D 3 37.813 35.737 21.564 1 40.41 ? C22 SQU 401 A 1 HETATM 19 C C23 SQU . . . D 3 37.318 35.527 22.989 1 39.23 ? C23 SQU 401 A 1 HETATM 20 C C25 SQU . . . D 3 37.551 34.093 23.384 1 38.99 ? C25 SQU 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #