data_1KME # _model_server_result.job_id aDYci-sbRCDAaDRn-ORzxg _model_server_result.datetime_utc '2024-12-22 07:12:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 1KME # _exptl.entry_id 1KME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.58 _cell.angle_gamma 90 _cell.entry_id 1KME _cell.length_a 45 _cell.length_b 108.9 _cell.length_c 55.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KME _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 B NZ LYS 216 B LYS 216 1_555 H C15 RET . B RET 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1KME _atom_sites.fract_transf_matrix[1][1] 0.022222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 SQU A 1 401 401 SQU SQU . E 3 SQU A 1 402 402 SQU SQU . F 4 BGC B 1 501 501 BGC BGC . G 4 BGC B 1 502 502 BGC BGC . H 2 RET B 1 302 302 RET RET . I 5 HOH A 1 403 403 HOH HOH . I 5 HOH A 2 404 404 HOH HOH . I 5 HOH A 3 405 405 HOH HOH . I 5 HOH A 4 406 406 HOH HOH . I 5 HOH A 5 407 407 HOH HOH . I 5 HOH A 6 408 408 HOH HOH . I 5 HOH A 7 409 409 HOH HOH . I 5 HOH A 8 410 410 HOH HOH . I 5 HOH A 9 411 411 HOH HOH . I 5 HOH A 10 412 412 HOH HOH . I 5 HOH A 11 413 413 HOH HOH . I 5 HOH A 12 414 414 HOH HOH . I 5 HOH A 13 415 415 HOH HOH . I 5 HOH A 14 416 416 HOH HOH . I 5 HOH A 15 417 417 HOH HOH . I 5 HOH A 16 418 418 HOH HOH . I 5 HOH A 17 419 419 HOH HOH . I 5 HOH A 18 420 420 HOH HOH . I 5 HOH A 19 421 421 HOH HOH . I 5 HOH A 20 422 422 HOH HOH . I 5 HOH A 21 423 423 HOH HOH . I 5 HOH A 22 424 424 HOH HOH . I 5 HOH A 23 425 425 HOH HOH . I 5 HOH A 24 426 426 HOH HOH . I 5 HOH A 25 427 427 HOH HOH . I 5 HOH A 26 428 428 HOH HOH . I 5 HOH A 27 429 429 HOH HOH . I 5 HOH A 28 430 430 HOH HOH . I 5 HOH A 29 431 431 HOH HOH . I 5 HOH A 30 432 432 HOH HOH . I 5 HOH A 31 433 433 HOH HOH . I 5 HOH A 32 434 434 HOH HOH . I 5 HOH A 33 435 435 HOH HOH . I 5 HOH A 34 436 436 HOH HOH . I 5 HOH A 35 437 437 HOH HOH . I 5 HOH A 36 438 438 HOH HOH . I 5 HOH A 37 439 439 HOH HOH . I 5 HOH A 38 440 440 HOH HOH . I 5 HOH A 39 441 441 HOH HOH . I 5 HOH A 40 442 442 HOH HOH . I 5 HOH A 41 443 443 HOH HOH . I 5 HOH A 42 444 444 HOH HOH . I 5 HOH A 43 445 445 HOH HOH . I 5 HOH A 44 446 446 HOH HOH . I 5 HOH A 45 447 447 HOH HOH . I 5 HOH A 46 448 448 HOH HOH . I 5 HOH A 47 449 449 HOH HOH . I 5 HOH A 48 450 450 HOH HOH . I 5 HOH A 49 451 451 HOH HOH . I 5 HOH A 50 452 452 HOH HOH . I 5 HOH A 51 453 453 HOH HOH . I 5 HOH A 52 454 454 HOH HOH . I 5 HOH A 53 455 455 HOH HOH . J 5 HOH B 1 503 503 HOH HOH . J 5 HOH B 2 504 504 HOH HOH . J 5 HOH B 3 505 505 HOH HOH . J 5 HOH B 4 506 506 HOH HOH . J 5 HOH B 5 507 507 HOH HOH . J 5 HOH B 6 508 508 HOH HOH . J 5 HOH B 7 509 509 HOH HOH . J 5 HOH B 8 510 510 HOH HOH . J 5 HOH B 9 511 511 HOH HOH . J 5 HOH B 10 512 512 HOH HOH . J 5 HOH B 11 513 513 HOH HOH . J 5 HOH B 12 514 514 HOH HOH . J 5 HOH B 13 515 515 HOH HOH . J 5 HOH B 14 516 516 HOH HOH . J 5 HOH B 15 517 517 HOH HOH . J 5 HOH B 16 518 518 HOH HOH . J 5 HOH B 17 519 519 HOH HOH . J 5 HOH B 18 520 520 HOH HOH . J 5 HOH B 19 521 521 HOH HOH . J 5 HOH B 20 522 522 HOH HOH . J 5 HOH B 21 523 523 HOH HOH . J 5 HOH B 22 524 524 HOH HOH . J 5 HOH B 23 525 525 HOH HOH . J 5 HOH B 24 526 526 HOH HOH . J 5 HOH B 25 527 527 HOH HOH . J 5 HOH B 26 528 528 HOH HOH . J 5 HOH B 27 529 529 HOH HOH . J 5 HOH B 28 530 530 HOH HOH . J 5 HOH B 29 531 531 HOH HOH . J 5 HOH B 30 532 532 HOH HOH . J 5 HOH B 31 533 533 HOH HOH . J 5 HOH B 32 534 534 HOH HOH . J 5 HOH B 33 535 535 HOH HOH . J 5 HOH B 34 536 536 HOH HOH . J 5 HOH B 35 537 537 HOH HOH . J 5 HOH B 36 538 538 HOH HOH . J 5 HOH B 37 539 539 HOH HOH . J 5 HOH B 38 540 540 HOH HOH . J 5 HOH B 39 541 541 HOH HOH . J 5 HOH B 40 542 542 HOH HOH . J 5 HOH B 41 543 543 HOH HOH . J 5 HOH B 42 544 544 HOH HOH . J 5 HOH B 43 545 545 HOH HOH . J 5 HOH B 44 546 546 HOH HOH . J 5 HOH B 45 547 547 HOH HOH . J 5 HOH B 46 548 548 HOH HOH . J 5 HOH B 47 549 549 HOH HOH . J 5 HOH B 48 550 550 HOH HOH . J 5 HOH B 49 551 551 HOH HOH . J 5 HOH B 50 552 552 HOH HOH . J 5 HOH B 51 553 553 HOH HOH . J 5 HOH B 52 554 554 HOH HOH . J 5 HOH B 53 555 555 HOH HOH . J 5 HOH B 54 556 556 HOH HOH . J 5 HOH B 55 557 557 HOH HOH . J 5 HOH B 56 558 558 HOH HOH . J 5 HOH B 57 559 559 HOH HOH . J 5 HOH B 58 560 560 HOH HOH . J 5 HOH B 59 561 561 HOH HOH . J 5 HOH B 60 562 562 HOH HOH . J 5 HOH B 61 563 563 HOH HOH . J 5 HOH B 62 564 564 HOH HOH . J 5 HOH B 63 565 565 HOH HOH . J 5 HOH B 64 566 566 HOH HOH . J 5 HOH B 65 567 567 HOH HOH . J 5 HOH B 66 568 568 HOH HOH . J 5 HOH B 67 569 569 HOH HOH . J 5 HOH B 68 570 570 HOH HOH . J 5 HOH B 69 571 571 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . F 4 22.859 67.743 15.512 1 33.55 ? C2 BGC 501 B 1 HETATM 2 C C3 BGC . . . F 4 23.845 68.257 16.544 1 34.58 ? C3 BGC 501 B 1 HETATM 3 C C4 BGC . . . F 4 23.22 69.442 17.246 1 34.69 ? C4 BGC 501 B 1 HETATM 4 C C5 BGC . . . F 4 21.799 69.134 17.79 1 34.44 ? C5 BGC 501 B 1 HETATM 5 C C6 BGC . . . F 4 21.115 70.448 18.03 1 35.57 ? C6 BGC 501 B 1 HETATM 6 C C1 BGC . . . F 4 21.604 67.293 16.22 1 34.04 ? C1 BGC 501 B 1 HETATM 7 O O1 BGC . . . F 4 20.731 66.716 15.304 1 31.91 ? O1 BGC 501 B 1 HETATM 8 O O2 BGC . . . F 4 23.42 66.676 14.766 1 35.79 ? O2 BGC 501 B 1 HETATM 9 O O3 BGC . . . F 4 25.054 68.668 15.909 1 33.69 ? O3 BGC 501 B 1 HETATM 10 O O4 BGC . . . F 4 24.073 69.863 18.307 1 35.48 ? O4 BGC 501 B 1 HETATM 11 O O5 BGC . . . F 4 20.964 68.439 16.811 1 33.83 ? O5 BGC 501 B 1 HETATM 12 O O6 BGC . . . F 4 20.024 70.627 17.133 1 36.74 ? O6 BGC 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 575 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #