data_1KMI # _model_server_result.job_id IlepxyLkdUPpw6ILDccVZg _model_server_result.datetime_utc '2024-11-25 23:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":215}' # _entry.id 1KMI # _exptl.entry_id 1KMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.172 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BICINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KMI _cell.length_a 163.28 _cell.length_b 163.28 _cell.length_c 54.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 163.28 163.28 27.0665 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 13 Y ASP 13 1_555 C MG MG . Y MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc2 A OD1 ASP 57 Y ASP 57 1_555 D BE BEF . Y BEF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.522 ? metalc ? metalc3 A OD2 ASP 57 Y ASP 57 1_555 C MG MG . Y MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc4 A O ASN 59 Y ASN 59 1_555 C MG MG . Y MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc5 D F1 BEF . Y BEF 201 1_555 C MG MG . Y MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 C MG MG . Y MG 301 1_555 B OE1 GLN 147 Z GLN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C6 H13 N O4' _chem_comp.formula_weight 163.172 _chem_comp.id BCN _chem_comp.mon_nstd_flag . _chem_comp.name BICINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 BCN sing 70 n n N1 C3 BCN sing 71 n n N1 C5 BCN sing 72 n n C1 C2 BCN sing 73 n n C1 H11 BCN sing 74 n n C1 H12 BCN sing 75 n n C2 O21 BCN doub 76 n n C2 O22 BCN sing 77 n n O22 HO2 BCN sing 78 n n C3 C4 BCN sing 79 n n C3 H31 BCN sing 80 n n C3 H32 BCN sing 81 n n C4 O4 BCN sing 82 n n C4 H41 BCN sing 83 n n C4 H42 BCN sing 84 n n O4 HO4 BCN sing 85 n n C5 C6 BCN sing 86 n n C5 H51 BCN sing 87 n n C5 H52 BCN sing 88 n n C6 O6 BCN sing 89 n n C6 H61 BCN sing 90 n n C6 H62 BCN sing 91 n n O6 HO6 BCN sing 92 n n # _atom_sites.entry_id 1KMI _atom_sites.fract_transf_matrix[1][1] 0.006124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG Y 1 301 301 MG MG . D 4 BEF Y 1 201 201 BEF BEF . E 5 BCN Z 1 215 5 BCN BCN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BCN . . . E 5 157.008 -18.025 35.073 1 104.21 ? N1 BCN 215 Z 1 HETATM 2 C C1 BCN . . . E 5 157.43 -17.109 34 1 104.1 ? C1 BCN 215 Z 1 HETATM 3 C C2 BCN . . . E 5 157.299 -17.779 32.61 1 104.03 ? C2 BCN 215 Z 1 HETATM 4 O O21 BCN . . . E 5 157.526 -17.076 31.602 1 103.99 ? O21 BCN 215 Z 1 HETATM 5 O O22 BCN . . . E 5 156.976 -18.995 32.516 1 103.95 ? O22 BCN 215 Z 1 HETATM 6 C C3 BCN . . . E 5 155.979 -17.386 35.908 1 104.2 ? C3 BCN 215 Z 1 HETATM 7 C C4 BCN . . . E 5 154.711 -18.235 35.929 1 104.23 ? C4 BCN 215 Z 1 HETATM 8 O O4 BCN . . . E 5 155.041 -19.6 36.21 1 104.29 ? O4 BCN 215 Z 1 HETATM 9 C C5 BCN . . . E 5 158.165 -18.406 35.915 1 104.22 ? C5 BCN 215 Z 1 HETATM 10 C C6 BCN . . . E 5 158.271 -19.922 36.024 1 104.06 ? C6 BCN 215 Z 1 HETATM 11 O O6 BCN . . . E 5 159.624 -20.3 35.883 1 103.91 ? O6 BCN 215 Z 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #