data_1KMM # _model_server_result.job_id LgSBIoymxbOVOz9ABFMOaw _model_server_result.datetime_utc '2025-02-05 10:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kmm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":450}' # _entry.id 1KMM # _exptl.entry_id 1KMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 484.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HISTIDYL-ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 115 _cell.angle_beta 97.4 _cell.angle_gamma 90 _cell.entry_id 1KMM _cell.length_a 61.4 _cell.length_b 110.7 _cell.length_c 108.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C16 H21 N8 O8 P' _chem_comp.formula_weight 484.361 _chem_comp.id HAM _chem_comp.mon_nstd_flag . _chem_comp.name 'HISTIDYL-ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P HAM doub 129 n n P O2P HAM sing 130 n n P O3P HAM sing 131 n n P O5' HAM sing 132 n n O3P C HAM sing 133 n n O5' C5' HAM sing 134 n n C5' C4' HAM sing 135 n n C5' "H5'1" HAM sing 136 n n C5' "H5'2" HAM sing 137 n n C4' O4' HAM sing 138 n n C4' C3' HAM sing 139 n n C4' H4' HAM sing 140 n n O4' C1' HAM sing 141 n n C3' O3' HAM sing 142 n n C3' C2' HAM sing 143 n n C3' H3' HAM sing 144 n n O3' HO3' HAM sing 145 n n C2' O2' HAM sing 146 n n C2' C1' HAM sing 147 n n C2' H2' HAM sing 148 n n O2' HO2' HAM sing 149 n n C1' N9 HAM sing 150 n n C1' H1' HAM sing 151 n n N9 C8 HAM sing 152 n y N9 C4 HAM sing 153 n y C8 N7 HAM doub 154 n y C8 H8 HAM sing 155 n n N7 C5 HAM sing 156 n y C5 C6 HAM sing 157 n y C5 C4 HAM doub 158 n y C6 N6 HAM sing 159 n n C6 N1 HAM doub 160 n y N6 HN61 HAM sing 161 n n N6 HN62 HAM sing 162 n n N1 C2 HAM sing 163 n y C2 N3 HAM doub 164 n y C2 H2 HAM sing 165 n n N3 C4 HAM sing 166 n y C O HAM doub 167 n n C CA HAM sing 168 n n CA N HAM sing 169 n n CA CB HAM sing 170 n n CA HA HAM sing 171 n n N HN1 HAM sing 172 n n N HN2 HAM sing 173 n n N HN3 HAM sing 174 n n CB CG HAM sing 175 n n CB HB1 HAM sing 176 n n CB HB2 HAM sing 177 n n CG CD2 HAM doub 178 n y CG ND1 HAM sing 179 n y CD2 NE2 HAM sing 180 n y CD2 HD2 HAM sing 181 n n ND1 CE1 HAM doub 182 n y CE1 NE2 HAM sing 183 n y CE1 HE1 HAM sing 184 n n NE2 HE2 HAM sing 185 n n # _atom_sites.entry_id 1KMM _atom_sites.fract_transf_matrix[1][1] 0.016287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002338 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009033 _atom_sites.fract_transf_matrix[2][3] 0.004256 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HAM A 1 450 450 HAM HAM . F 2 HAM B 1 450 450 HAM HAM . G 2 HAM C 1 450 450 HAM HAM . H 2 HAM D 1 450 450 HAM HAM . I 3 HOH A 1 543 543 HOH HOH . I 3 HOH A 2 548 548 HOH HOH . I 3 HOH A 3 549 549 HOH HOH . I 3 HOH A 4 550 550 HOH HOH . I 3 HOH A 5 551 551 HOH HOH . I 3 HOH A 6 552 552 HOH HOH . I 3 HOH A 7 556 556 HOH HOH . I 3 HOH A 8 557 557 HOH HOH . I 3 HOH A 9 572 572 HOH HOH . I 3 HOH A 10 573 573 HOH HOH . I 3 HOH A 11 574 574 HOH HOH . I 3 HOH A 12 575 575 HOH HOH . I 3 HOH A 13 576 576 HOH HOH . I 3 HOH A 14 577 577 HOH HOH . I 3 HOH A 15 578 578 HOH HOH . I 3 HOH A 16 579 579 HOH HOH . I 3 HOH A 17 580 580 HOH HOH . I 3 HOH A 18 582 582 HOH HOH . I 3 HOH A 19 583 583 HOH HOH . I 3 HOH A 20 584 584 HOH HOH . I 3 HOH A 21 586 586 HOH HOH . I 3 HOH A 22 587 587 HOH HOH . I 3 HOH A 23 588 588 HOH HOH . I 3 HOH A 24 592 592 HOH HOH . I 3 HOH A 25 596 596 HOH HOH . I 3 HOH A 26 600 600 HOH HOH . I 3 HOH A 27 601 601 HOH HOH . I 3 HOH A 28 602 602 HOH HOH . I 3 HOH A 29 603 603 HOH HOH . I 3 HOH A 30 604 604 HOH HOH . I 3 HOH A 31 627 627 HOH HOH . I 3 HOH A 32 636 636 HOH HOH . I 3 HOH A 33 637 637 HOH HOH . I 3 HOH A 34 639 639 HOH HOH . I 3 HOH A 35 640 640 HOH HOH . I 3 HOH A 36 642 642 HOH HOH . I 3 HOH A 37 643 643 HOH HOH . I 3 HOH A 38 648 648 HOH HOH . I 3 HOH A 39 655 655 HOH HOH . I 3 HOH A 40 665 665 HOH HOH . I 3 HOH A 41 668 668 HOH HOH . I 3 HOH A 42 669 669 HOH HOH . I 3 HOH A 43 676 676 HOH HOH . I 3 HOH A 44 677 677 HOH HOH . I 3 HOH A 45 682 682 HOH HOH . J 3 HOH B 1 542 542 HOH HOH . J 3 HOH B 2 544 544 HOH HOH . J 3 HOH B 3 545 545 HOH HOH . J 3 HOH B 4 546 546 HOH HOH . J 3 HOH B 5 547 547 HOH HOH . J 3 HOH B 6 553 553 HOH HOH . J 3 HOH B 7 554 554 HOH HOH . J 3 HOH B 8 555 555 HOH HOH . J 3 HOH B 9 558 558 HOH HOH . J 3 HOH B 10 559 559 HOH HOH . J 3 HOH B 11 571 571 HOH HOH . J 3 HOH B 12 581 581 HOH HOH . J 3 HOH B 13 585 585 HOH HOH . J 3 HOH B 14 589 589 HOH HOH . J 3 HOH B 15 590 590 HOH HOH . J 3 HOH B 16 591 591 HOH HOH . J 3 HOH B 17 593 593 HOH HOH . J 3 HOH B 18 594 594 HOH HOH . J 3 HOH B 19 595 595 HOH HOH . J 3 HOH B 20 597 597 HOH HOH . J 3 HOH B 21 598 598 HOH HOH . J 3 HOH B 22 599 599 HOH HOH . J 3 HOH B 23 605 605 HOH HOH . J 3 HOH B 24 606 606 HOH HOH . J 3 HOH B 25 607 607 HOH HOH . J 3 HOH B 26 610 610 HOH HOH . J 3 HOH B 27 611 611 HOH HOH . J 3 HOH B 28 612 612 HOH HOH . J 3 HOH B 29 617 617 HOH HOH . J 3 HOH B 30 618 618 HOH HOH . J 3 HOH B 31 619 619 HOH HOH . J 3 HOH B 32 620 620 HOH HOH . J 3 HOH B 33 638 638 HOH HOH . J 3 HOH B 34 641 641 HOH HOH . J 3 HOH B 35 644 644 HOH HOH . J 3 HOH B 36 645 645 HOH HOH . J 3 HOH B 37 646 646 HOH HOH . J 3 HOH B 38 647 647 HOH HOH . J 3 HOH B 39 649 649 HOH HOH . J 3 HOH B 40 650 650 HOH HOH . J 3 HOH B 41 651 651 HOH HOH . J 3 HOH B 42 652 652 HOH HOH . J 3 HOH B 43 653 653 HOH HOH . J 3 HOH B 44 654 654 HOH HOH . J 3 HOH B 45 656 656 HOH HOH . J 3 HOH B 46 657 657 HOH HOH . J 3 HOH B 47 658 658 HOH HOH . J 3 HOH B 48 664 664 HOH HOH . J 3 HOH B 49 666 666 HOH HOH . J 3 HOH B 50 667 667 HOH HOH . K 3 HOH C 1 501 501 HOH HOH . K 3 HOH C 2 502 502 HOH HOH . K 3 HOH C 3 505 505 HOH HOH . K 3 HOH C 4 506 506 HOH HOH . K 3 HOH C 5 507 507 HOH HOH . K 3 HOH C 6 508 508 HOH HOH . K 3 HOH C 7 509 509 HOH HOH . K 3 HOH C 8 510 510 HOH HOH . K 3 HOH C 9 511 511 HOH HOH . K 3 HOH C 10 512 512 HOH HOH . K 3 HOH C 11 515 515 HOH HOH . K 3 HOH C 12 516 516 HOH HOH . K 3 HOH C 13 517 517 HOH HOH . K 3 HOH C 14 518 518 HOH HOH . K 3 HOH C 15 520 520 HOH HOH . K 3 HOH C 16 522 522 HOH HOH . K 3 HOH C 17 524 524 HOH HOH . K 3 HOH C 18 530 530 HOH HOH . K 3 HOH C 19 531 531 HOH HOH . K 3 HOH C 20 532 532 HOH HOH . K 3 HOH C 21 533 533 HOH HOH . K 3 HOH C 22 534 534 HOH HOH . K 3 HOH C 23 536 536 HOH HOH . K 3 HOH C 24 539 539 HOH HOH . K 3 HOH C 25 540 540 HOH HOH . K 3 HOH C 26 560 560 HOH HOH . K 3 HOH C 27 561 561 HOH HOH . K 3 HOH C 28 565 565 HOH HOH . K 3 HOH C 29 566 566 HOH HOH . K 3 HOH C 30 569 569 HOH HOH . K 3 HOH C 31 570 570 HOH HOH . K 3 HOH C 32 608 608 HOH HOH . K 3 HOH C 33 609 609 HOH HOH . K 3 HOH C 34 613 613 HOH HOH . K 3 HOH C 35 615 615 HOH HOH . K 3 HOH C 36 621 621 HOH HOH . K 3 HOH C 37 622 622 HOH HOH . K 3 HOH C 38 623 623 HOH HOH . K 3 HOH C 39 624 624 HOH HOH . K 3 HOH C 40 625 625 HOH HOH . K 3 HOH C 41 628 628 HOH HOH . K 3 HOH C 42 629 629 HOH HOH . K 3 HOH C 43 631 631 HOH HOH . K 3 HOH C 44 632 632 HOH HOH . K 3 HOH C 45 633 633 HOH HOH . K 3 HOH C 46 634 634 HOH HOH . K 3 HOH C 47 659 659 HOH HOH . K 3 HOH C 48 660 660 HOH HOH . K 3 HOH C 49 661 661 HOH HOH . K 3 HOH C 50 670 670 HOH HOH . K 3 HOH C 51 671 671 HOH HOH . K 3 HOH C 52 673 673 HOH HOH . K 3 HOH C 53 678 678 HOH HOH . K 3 HOH C 54 679 679 HOH HOH . K 3 HOH C 55 681 681 HOH HOH . L 3 HOH D 1 503 503 HOH HOH . L 3 HOH D 2 504 504 HOH HOH . L 3 HOH D 3 513 513 HOH HOH . L 3 HOH D 4 514 514 HOH HOH . L 3 HOH D 5 519 519 HOH HOH . L 3 HOH D 6 521 521 HOH HOH . L 3 HOH D 7 523 523 HOH HOH . L 3 HOH D 8 525 525 HOH HOH . L 3 HOH D 9 526 526 HOH HOH . L 3 HOH D 10 527 527 HOH HOH . L 3 HOH D 11 528 528 HOH HOH . L 3 HOH D 12 529 529 HOH HOH . L 3 HOH D 13 535 535 HOH HOH . L 3 HOH D 14 537 537 HOH HOH . L 3 HOH D 15 538 538 HOH HOH . L 3 HOH D 16 541 541 HOH HOH . L 3 HOH D 17 562 562 HOH HOH . L 3 HOH D 18 563 563 HOH HOH . L 3 HOH D 19 564 564 HOH HOH . L 3 HOH D 20 567 567 HOH HOH . L 3 HOH D 21 568 568 HOH HOH . L 3 HOH D 22 614 614 HOH HOH . L 3 HOH D 23 616 616 HOH HOH . L 3 HOH D 24 626 626 HOH HOH . L 3 HOH D 25 630 630 HOH HOH . L 3 HOH D 26 635 635 HOH HOH . L 3 HOH D 27 662 662 HOH HOH . L 3 HOH D 28 663 663 HOH HOH . L 3 HOH D 29 672 672 HOH HOH . L 3 HOH D 30 674 674 HOH HOH . L 3 HOH D 31 675 675 HOH HOH . L 3 HOH D 32 680 680 HOH HOH . L 3 HOH D 33 683 683 HOH HOH . L 3 HOH D 34 684 684 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P HAM . . . E 2 -8.211 22.214 18.064 1 34.94 ? P HAM 450 A 1 HETATM 2 O O1P HAM . . . E 2 -7.476 23.487 18.012 1 31.91 ? O1P HAM 450 A 1 HETATM 3 O O2P HAM . . . E 2 -7.59 21.012 17.465 1 34.2 ? O2P HAM 450 A 1 HETATM 4 O O3P HAM . . . E 2 -9.751 22.578 17.489 1 37.57 ? O3P HAM 450 A 1 HETATM 5 O O5' HAM . . . E 2 -8.29 21.934 19.633 1 31.21 ? O5' HAM 450 A 1 HETATM 6 C C5' HAM . . . E 2 -9.491 21.533 20.282 1 26.48 ? C5' HAM 450 A 1 HETATM 7 C C4' HAM . . . E 2 -9.154 20.764 21.523 1 24.72 ? C4' HAM 450 A 1 HETATM 8 O O4' HAM . . . E 2 -8.677 19.443 21.177 1 26.43 ? O4' HAM 450 A 1 HETATM 9 C C3' HAM . . . E 2 -7.973 21.363 22.249 1 25.35 ? C3' HAM 450 A 1 HETATM 10 O O3' HAM . . . E 2 -8.372 22.458 23.044 1 24.55 ? O3' HAM 450 A 1 HETATM 11 C C2' HAM . . . E 2 -7.465 20.193 23.081 1 27.52 ? C2' HAM 450 A 1 HETATM 12 O O2' HAM . . . E 2 -8.179 20.061 24.289 1 30.19 ? O2' HAM 450 A 1 HETATM 13 C C1' HAM . . . E 2 -7.73 19.007 22.149 1 27.37 ? C1' HAM 450 A 1 HETATM 14 N N9 HAM . . . E 2 -6.552 18.481 21.453 1 27.29 ? N9 HAM 450 A 1 HETATM 15 C C8 HAM . . . E 2 -6.11 18.849 20.209 1 27.25 ? C8 HAM 450 A 1 HETATM 16 N N7 HAM . . . E 2 -5.045 18.204 19.81 1 29.34 ? N7 HAM 450 A 1 HETATM 17 C C5 HAM . . . E 2 -4.755 17.346 20.862 1 28.95 ? C5 HAM 450 A 1 HETATM 18 C C6 HAM . . . E 2 -3.746 16.354 21.042 1 27.73 ? C6 HAM 450 A 1 HETATM 19 N N6 HAM . . . E 2 -2.835 16.043 20.119 1 24.52 ? N6 HAM 450 A 1 HETATM 20 N N1 HAM . . . E 2 -3.732 15.675 22.207 1 27.53 ? N1 HAM 450 A 1 HETATM 21 C C2 HAM . . . E 2 -4.676 15.951 23.113 1 30.3 ? C2 HAM 450 A 1 HETATM 22 N N3 HAM . . . E 2 -5.691 16.837 23.052 1 32.06 ? N3 HAM 450 A 1 HETATM 23 C C4 HAM . . . E 2 -5.669 17.511 21.889 1 29.51 ? C4 HAM 450 A 1 HETATM 24 C C HAM . . . E 2 -10.706 21.661 17.299 1 35.18 ? C HAM 450 A 1 HETATM 25 O O HAM . . . E 2 -10.669 20.41 17.467 1 36.41 ? O HAM 450 A 1 HETATM 26 C CA HAM . . . E 2 -12.121 22.07 16.747 1 32.63 ? CA HAM 450 A 1 HETATM 27 N N HAM . . . E 2 -12.629 21.126 15.706 1 28.56 ? N HAM 450 A 1 HETATM 28 C CB HAM . . . E 2 -13.203 22.163 17.84 1 33.77 ? CB HAM 450 A 1 HETATM 29 C CG HAM . . . E 2 -14.583 22.483 17.316 1 34.03 ? CG HAM 450 A 1 HETATM 30 C CD2 HAM . . . E 2 -15.625 21.646 17.076 1 34.18 ? CD2 HAM 450 A 1 HETATM 31 N ND1 HAM . . . E 2 -14.977 23.777 17.023 1 33.91 ? ND1 HAM 450 A 1 HETATM 32 C CE1 HAM . . . E 2 -16.233 23.696 16.611 1 30.41 ? CE1 HAM 450 A 1 HETATM 33 N NE2 HAM . . . E 2 -16.674 22.439 16.625 1 31.2 ? NE2 HAM 450 A 1 HETATM 34 H HO2' HAM . . . E 2 -7.805 19.317 24.755 1 0 ? HO2' HAM 450 A 1 HETATM 35 H HN61 HAM . . . E 2 -2.841 16.516 19.229 1 0 ? HN61 HAM 450 A 1 HETATM 36 H HN62 HAM . . . E 2 -2.148 15.327 20.3 1 0 ? HN62 HAM 450 A 1 HETATM 37 H HN1 HAM . . . E 2 -12.085 21.269 14.834 1 0 ? HN1 HAM 450 A 1 HETATM 38 H HN2 HAM . . . E 2 -13.624 21.312 15.54 1 0 ? HN2 HAM 450 A 1 HETATM 39 H HN3 HAM . . . E 2 -12.492 20.156 16.055 1 0 ? HN3 HAM 450 A 1 HETATM 40 H HE2 HAM . . . E 2 -17.571 22.132 16.376 1 0 ? HE2 HAM 450 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #