data_1KMY # _model_server_result.job_id Qhl1rlaHm42edACY1wXSfg _model_server_result.datetime_utc '2025-07-17 04:08:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1KMY # _exptl.entry_id 1KMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.207 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIPHENYL-2,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KMY _cell.length_a 123.3 _cell.length_b 123.3 _cell.length_c 110.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 110.9 6 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 110.9 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 110.9 8 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 110.9 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 145 A HIS 146 1_555 B FE FE2 . A FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A NE2 HIS 209 A HIS 210 1_555 B FE FE2 . A FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc3 A OE2 GLU 259 A GLU 260 1_555 B FE FE2 . A FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 C OK1 BPY . A BPY 300 1_555 B FE FE2 . A FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 C OK2 BPY . A BPY 300 1_555 B FE FE2 . A FE2 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 B FE FE2 . A FE2 500 1_555 E O HOH . A HOH 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? # _chem_comp.formula 'C12 H10 O2' _chem_comp.formula_weight 186.207 _chem_comp.id BPY _chem_comp.mon_nstd_flag . _chem_comp.name BIPHENYL-2,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK1 CK2 BPY doub 70 n y CK1 CK6 BPY sing 71 n y CK1 HCK1 BPY sing 72 n n CK2 CK3 BPY sing 73 n y CK2 CK7 BPY sing 74 n y CK3 CK4 BPY doub 75 n y CK3 OK2 BPY sing 76 n n CK4 CK5 BPY sing 77 n y CK4 OK1 BPY sing 78 n n CK5 CK6 BPY doub 79 n y CK5 HCK5 BPY sing 80 n n CK6 HCK6 BPY sing 81 n n CK7 CK8 BPY doub 82 n y CK7 CKC BPY sing 83 n y CK8 CK9 BPY sing 84 n y CK8 HCK8 BPY sing 85 n n CK9 CKA BPY doub 86 n y CK9 HCK9 BPY sing 87 n n CKA CKB BPY sing 88 n y CKA HC10 BPY sing 89 n n CKB CKC BPY doub 90 n y CKB HC11 BPY sing 91 n n CKC HC12 BPY sing 92 n n OK1 H0K1 BPY sing 93 n n OK2 HOK2 BPY sing 94 n n # _atom_sites.entry_id 1KMY _atom_sites.fract_transf_matrix[1][1] 0.00811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 500 500 FE2 FE2 . C 3 BPY A 1 300 300 BPY BPY . D 4 TBU A 1 601 601 TBU TBU . E 5 HOH A 1 1001 1001 HOH HOH . E 5 HOH A 2 1004 1004 HOH HOH . E 5 HOH A 3 1006 1006 HOH HOH . E 5 HOH A 4 1008 1008 HOH HOH . E 5 HOH A 5 1010 1010 HOH HOH . E 5 HOH A 6 1011 1011 HOH HOH . E 5 HOH A 7 1015 1015 HOH HOH . E 5 HOH A 8 1017 1017 HOH HOH . E 5 HOH A 9 1019 1019 HOH HOH . E 5 HOH A 10 1021 1021 HOH HOH . E 5 HOH A 11 1022 1022 HOH HOH . E 5 HOH A 12 1023 1023 HOH HOH . E 5 HOH A 13 1027 1027 HOH HOH . E 5 HOH A 14 1032 1032 HOH HOH . E 5 HOH A 15 1034 1034 HOH HOH . E 5 HOH A 16 1035 1035 HOH HOH . E 5 HOH A 17 1037 1037 HOH HOH . E 5 HOH A 18 1038 1038 HOH HOH . E 5 HOH A 19 1041 1041 HOH HOH . E 5 HOH A 20 1042 1042 HOH HOH . E 5 HOH A 21 1044 1044 HOH HOH . E 5 HOH A 22 1048 1048 HOH HOH . E 5 HOH A 23 1049 1049 HOH HOH . E 5 HOH A 24 1051 1051 HOH HOH . E 5 HOH A 25 1054 1054 HOH HOH . E 5 HOH A 26 1056 1056 HOH HOH . E 5 HOH A 27 1059 1059 HOH HOH . E 5 HOH A 28 1062 1062 HOH HOH . E 5 HOH A 29 1063 1063 HOH HOH . E 5 HOH A 30 1066 1066 HOH HOH . E 5 HOH A 31 1070 1070 HOH HOH . E 5 HOH A 32 1075 1075 HOH HOH . E 5 HOH A 33 1077 1077 HOH HOH . E 5 HOH A 34 2004 2004 HOH HOH . E 5 HOH A 35 2005 2005 HOH HOH . E 5 HOH A 36 2007 2007 HOH HOH . E 5 HOH A 37 2010 2010 HOH HOH . E 5 HOH A 38 2018 2018 HOH HOH . E 5 HOH A 39 2021 2021 HOH HOH . E 5 HOH A 40 2024 2024 HOH HOH . E 5 HOH A 41 4001 4001 HOH HOH . E 5 HOH A 42 4003 4003 HOH HOH . E 5 HOH A 43 4006 4006 HOH HOH . E 5 HOH A 44 4007 4007 HOH HOH . E 5 HOH A 45 4020 4020 HOH HOH . E 5 HOH A 46 4023 4023 HOH HOH . E 5 HOH A 47 4026 4026 HOH HOH . E 5 HOH A 48 4027 4027 HOH HOH . E 5 HOH A 49 5001 5001 HOH HOH . E 5 HOH A 50 5016 5016 HOH HOH . E 5 HOH A 51 5020 5020 HOH HOH . E 5 HOH A 52 5022 5022 HOH HOH . E 5 HOH A 53 5027 5027 HOH HOH . E 5 HOH A 54 5029 5029 HOH HOH . E 5 HOH A 55 5032 5032 HOH HOH . E 5 HOH A 56 5036 5036 HOH HOH . E 5 HOH A 57 5039 5039 HOH HOH . E 5 HOH A 58 5042 5042 HOH HOH . E 5 HOH A 59 5043 5043 HOH HOH . E 5 HOH A 60 5053 5053 HOH HOH . E 5 HOH A 61 5061 5061 HOH HOH . E 5 HOH A 62 5065 5065 HOH HOH . E 5 HOH A 63 5071 5071 HOH HOH . E 5 HOH A 64 5077 5077 HOH HOH . E 5 HOH A 65 5082 5082 HOH HOH . E 5 HOH A 66 5088 5088 HOH HOH . E 5 HOH A 67 5107 5107 HOH HOH . E 5 HOH A 68 5111 5111 HOH HOH . E 5 HOH A 69 5123 5123 HOH HOH . E 5 HOH A 70 5137 5137 HOH HOH . E 5 HOH A 71 6016 6016 HOH HOH . E 5 HOH A 72 6023 6023 HOH HOH . E 5 HOH A 73 6033 6033 HOH HOH . E 5 HOH A 74 6044 6044 HOH HOH . E 5 HOH A 75 6061 6061 HOH HOH . E 5 HOH A 76 6068 6068 HOH HOH . E 5 HOH A 77 6072 6072 HOH HOH . E 5 HOH A 78 6092 6092 HOH HOH . E 5 HOH A 79 6095 6095 HOH HOH . E 5 HOH A 80 6103 6103 HOH HOH . E 5 HOH A 81 6107 6107 HOH HOH . E 5 HOH A 82 6141 6141 HOH HOH . E 5 HOH A 83 6144 6144 HOH HOH . E 5 HOH A 84 6152 6152 HOH HOH . E 5 HOH A 85 6198 6198 HOH HOH . E 5 HOH A 86 7012 7012 HOH HOH . E 5 HOH A 87 7053 7053 HOH HOH . E 5 HOH A 88 7119 7119 HOH HOH . E 5 HOH A 89 7140 7140 HOH HOH . E 5 HOH A 90 7159 7159 HOH HOH . E 5 HOH A 91 8001 8001 HOH HOH . E 5 HOH A 92 8002 8002 HOH HOH . E 5 HOH A 93 8003 8003 HOH HOH . E 5 HOH A 94 8007 8007 HOH HOH . E 5 HOH A 95 8008 8008 HOH HOH . E 5 HOH A 96 8015 8015 HOH HOH . E 5 HOH A 97 8016 8016 HOH HOH . E 5 HOH A 98 8018 8018 HOH HOH . E 5 HOH A 99 8019 8019 HOH HOH . E 5 HOH A 100 8020 8020 HOH HOH . E 5 HOH A 101 8021 8021 HOH HOH . E 5 HOH A 102 8023 8023 HOH HOH . E 5 HOH A 103 8025 8025 HOH HOH . E 5 HOH A 104 8029 8029 HOH HOH . E 5 HOH A 105 8031 8031 HOH HOH . E 5 HOH A 106 8032 8032 HOH HOH . E 5 HOH A 107 8033 8033 HOH HOH . E 5 HOH A 108 8034 8034 HOH HOH . E 5 HOH A 109 8035 8035 HOH HOH . E 5 HOH A 110 8036 8036 HOH HOH . E 5 HOH A 111 8037 8037 HOH HOH . E 5 HOH A 112 9001 9001 HOH HOH . E 5 HOH A 113 9002 9002 HOH HOH . E 5 HOH A 114 9003 9003 HOH HOH . E 5 HOH A 115 9004 9004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CK1 BPY . . . C 3 20.619 -23.165 72.433 1 23.1 ? CK1 BPY 300 A 1 HETATM 2 C CK2 BPY . . . C 3 21.908 -22.634 72.361 1 25.13 ? CK2 BPY 300 A 1 HETATM 3 C CK3 BPY . . . C 3 22.106 -21.326 71.903 1 24.3 ? CK3 BPY 300 A 1 HETATM 4 C CK4 BPY . . . C 3 21.027 -20.552 71.53 1 23.34 ? CK4 BPY 300 A 1 HETATM 5 C CK5 BPY . . . C 3 19.716 -21.089 71.603 1 19.69 ? CK5 BPY 300 A 1 HETATM 6 C CK6 BPY . . . C 3 19.527 -22.391 72.05 1 20.93 ? CK6 BPY 300 A 1 HETATM 7 C CK7 BPY . . . C 3 23.112 -23.415 72.776 1 27.61 ? CK7 BPY 300 A 1 HETATM 8 C CK8 BPY . . . C 3 23.466 -23.457 74.118 1 29.38 ? CK8 BPY 300 A 1 HETATM 9 C CK9 BPY . . . C 3 24.583 -24.159 74.526 1 31.4 ? CK9 BPY 300 A 1 HETATM 10 C CKA BPY . . . C 3 25.342 -24.833 73.597 1 30.89 ? CKA BPY 300 A 1 HETATM 11 C CKB BPY . . . C 3 24.989 -24.795 72.261 1 33.52 ? CKB BPY 300 A 1 HETATM 12 C CKC BPY . . . C 3 23.869 -24.094 71.851 1 31.1 ? CKC BPY 300 A 1 HETATM 13 O OK1 BPY . . . C 3 21.251 -19.252 71.084 1 22.57 ? OK1 BPY 300 A 1 HETATM 14 O OK2 BPY . . . C 3 23.383 -20.799 71.825 1 20.78 ? OK2 BPY 300 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #