data_1KN2
#
_model_server_result.job_id            21cJFWWoyhVdG6HDJ_i9QQ 
_model_server_result.datetime_utc      '2025-02-26 19:52:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kn2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":558}' 
#
_entry.id    1KN2 
#
_exptl.entry_id    1KN2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1KN2 
_cell.length_a            78.275 
_cell.length_b            78.275 
_cell.length_c            158.952 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KN2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 
A,C,D,E,F,G,H,I,J,K 3 1,2 
B,L 3 3,4 
A,C,D,E,F,G,H,I,J,K 4 1 
B,L 4 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 158.952 
3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z+1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 39.1375 67.788138 52.984 
4 'crystal symmetry operation' 5_665 x-y+1,-y+1,-z+2/3 1 0 0 0 -1 0 0 0 -1 39.1375 67.788138 105.968 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 150 H CYS 140 1_555 B SG CYS 205 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 A NE2 HIS 54 L HIS 49 1_555 C ZN ZN . L ZN 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc2 A OD2 ASP 65 L ASP 60 4_456 F ZN ZN . L ZN 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc3 A ND1 HIS 98 L HIS 93 1_555 D ZN ZN . L ZN 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc4 A OD1 ASP 156 L ASP 151 1_555 E ZN ZN . L ZN 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc5 A ND1 HIS 194 L HIS 189 1_555 E ZN ZN . L ZN 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc6 C ZN ZN . L ZN 553 1_555 K O HOH . L HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? 
metalc ? metalc7 C ZN ZN . L ZN 553 1_555 B OD1 ASP 107 H ASP 100 1_555 ? ? ? C ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc8 D ZN ZN . L ZN 554 1_555 K O HOH . L HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.704 ? 
metalc ? metalc9 D ZN ZN . L ZN 554 1_555 K O HOH . L HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.716 ? 
metalc ? metalc10 D ZN ZN . L ZN 554 1_555 B OD1 ASP 183 H ASP 181 5_665 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
metalc ? metalc11 E ZN ZN . L ZN 555 1_555 K O HOH . L HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? 
metalc ? metalc12 E ZN ZN . L ZN 555 1_555 K O HOH . L HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc13 F ZN ZN . L ZN 556 1_555 K O HOH . L HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc14 F ZN ZN . L ZN 556 1_555 K O HOH . L HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
metalc ? metalc15 F ZN ZN . L ZN 556 1_555 K O HOH . L HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? 
metalc ? metalc16 G ZN ZN . L ZN 557 1_555 K O HOH . L HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.666 ? 
metalc ? metalc17 G ZN ZN . L ZN 557 1_555 K O HOH . L HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? 
metalc ? metalc18 H ZN ZN . L ZN 558 1_555 K O HOH . L HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc19 H ZN ZN . L ZN 558 1_555 K O HOH . L HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.736 ? 
metalc ? metalc20 H ZN ZN . L ZN 558 1_555 K O HOH . L HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? 
metalc ? metalc21 I ZN ZN . L ZN 559 1_555 K O HOH . L HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc22 I ZN ZN . L ZN 559 1_555 K O HOH . L HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1KN2 
_atom_sites.fract_transf_matrix[1][1]    0.012775 
_atom_sites.fract_transf_matrix[1][2]    0.007376 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014752 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN L 1 553 1 ZN ZN . 
D 3 ZN L 1 554 2 ZN ZN . 
E 3 ZN L 1 555 3 ZN ZN . 
F 3 ZN L 1 556 4 ZN ZN . 
G 3 ZN L 1 557 5 ZN ZN . 
H 3 ZN L 1 558 6 ZN ZN . 
I 3 ZN L 1 559 7 ZN ZN . 
J 4 PNE L 1 551 551 PNE PNP . 
K 5 HOH L 1 560 1 HOH HOH . 
K 5 HOH L 2 561 3 HOH HOH . 
K 5 HOH L 3 562 5 HOH HOH . 
K 5 HOH L 4 563 9 HOH HOH . 
K 5 HOH L 5 564 11 HOH HOH . 
K 5 HOH L 6 565 12 HOH HOH . 
K 5 HOH L 7 566 13 HOH HOH . 
K 5 HOH L 8 567 15 HOH HOH . 
K 5 HOH L 9 568 27 HOH HOH . 
K 5 HOH L 10 569 28 HOH HOH . 
K 5 HOH L 11 570 30 HOH HOH . 
K 5 HOH L 12 571 34 HOH HOH . 
K 5 HOH L 13 572 36 HOH HOH . 
K 5 HOH L 14 573 40 HOH HOH . 
K 5 HOH L 15 574 41 HOH HOH . 
K 5 HOH L 16 575 42 HOH HOH . 
K 5 HOH L 17 576 44 HOH HOH . 
K 5 HOH L 18 577 46 HOH HOH . 
K 5 HOH L 19 578 47 HOH HOH . 
K 5 HOH L 20 579 49 HOH HOH . 
K 5 HOH L 21 580 50 HOH HOH . 
K 5 HOH L 22 581 52 HOH HOH . 
K 5 HOH L 23 582 53 HOH HOH . 
K 5 HOH L 24 583 54 HOH HOH . 
K 5 HOH L 25 584 55 HOH HOH . 
K 5 HOH L 26 585 56 HOH HOH . 
K 5 HOH L 27 586 58 HOH HOH . 
K 5 HOH L 28 587 64 HOH HOH . 
K 5 HOH L 29 588 65 HOH HOH . 
K 5 HOH L 30 589 67 HOH HOH . 
K 5 HOH L 31 590 70 HOH HOH . 
K 5 HOH L 32 591 72 HOH HOH . 
K 5 HOH L 33 592 73 HOH HOH . 
K 5 HOH L 34 593 74 HOH HOH . 
K 5 HOH L 35 594 75 HOH HOH . 
K 5 HOH L 36 595 76 HOH HOH . 
K 5 HOH L 37 596 77 HOH HOH . 
K 5 HOH L 38 597 78 HOH HOH . 
K 5 HOH L 39 598 79 HOH HOH . 
K 5 HOH L 40 599 80 HOH HOH . 
K 5 HOH L 41 600 81 HOH HOH . 
K 5 HOH L 42 601 84 HOH HOH . 
K 5 HOH L 43 602 85 HOH HOH . 
K 5 HOH L 44 603 86 HOH HOH . 
K 5 HOH L 45 604 87 HOH HOH . 
K 5 HOH L 46 605 90 HOH HOH . 
K 5 HOH L 47 606 91 HOH HOH . 
K 5 HOH L 48 607 96 HOH HOH . 
K 5 HOH L 49 608 97 HOH HOH . 
K 5 HOH L 50 609 99 HOH HOH . 
K 5 HOH L 51 610 100 HOH HOH . 
K 5 HOH L 52 611 102 HOH HOH . 
K 5 HOH L 53 612 103 HOH HOH . 
K 5 HOH L 54 613 104 HOH HOH . 
K 5 HOH L 55 614 105 HOH HOH . 
K 5 HOH L 56 615 110 HOH HOH . 
K 5 HOH L 57 616 114 HOH HOH . 
K 5 HOH L 58 617 115 HOH HOH . 
K 5 HOH L 59 618 116 HOH HOH . 
K 5 HOH L 60 619 117 HOH HOH . 
K 5 HOH L 61 620 118 HOH HOH . 
K 5 HOH L 62 621 121 HOH HOH . 
K 5 HOH L 63 622 122 HOH HOH . 
K 5 HOH L 64 623 123 HOH HOH . 
K 5 HOH L 65 624 124 HOH HOH . 
K 5 HOH L 66 625 125 HOH HOH . 
K 5 HOH L 67 626 126 HOH HOH . 
K 5 HOH L 68 627 129 HOH HOH . 
K 5 HOH L 69 628 130 HOH HOH . 
K 5 HOH L 70 629 131 HOH HOH . 
K 5 HOH L 71 630 132 HOH HOH . 
K 5 HOH L 72 631 133 HOH HOH . 
K 5 HOH L 73 632 134 HOH HOH . 
K 5 HOH L 74 633 135 HOH HOH . 
K 5 HOH L 75 634 136 HOH HOH . 
K 5 HOH L 76 635 137 HOH HOH . 
K 5 HOH L 77 636 142 HOH HOH . 
K 5 HOH L 78 637 143 HOH HOH . 
K 5 HOH L 79 638 149 HOH HOH . 
L 5 HOH H 1 224 2 HOH HOH . 
L 5 HOH H 2 225 4 HOH HOH . 
L 5 HOH H 3 226 6 HOH HOH . 
L 5 HOH H 4 227 7 HOH HOH . 
L 5 HOH H 5 228 8 HOH HOH . 
L 5 HOH H 6 229 10 HOH HOH . 
L 5 HOH H 7 230 14 HOH HOH . 
L 5 HOH H 8 231 16 HOH HOH . 
L 5 HOH H 9 232 17 HOH HOH . 
L 5 HOH H 10 233 18 HOH HOH . 
L 5 HOH H 11 234 19 HOH HOH . 
L 5 HOH H 12 235 20 HOH HOH . 
L 5 HOH H 13 236 21 HOH HOH . 
L 5 HOH H 14 237 22 HOH HOH . 
L 5 HOH H 15 238 23 HOH HOH . 
L 5 HOH H 16 239 24 HOH HOH . 
L 5 HOH H 17 240 25 HOH HOH . 
L 5 HOH H 18 241 26 HOH HOH . 
L 5 HOH H 19 242 29 HOH HOH . 
L 5 HOH H 20 243 31 HOH HOH . 
L 5 HOH H 21 244 32 HOH HOH . 
L 5 HOH H 22 245 33 HOH HOH . 
L 5 HOH H 23 246 35 HOH HOH . 
L 5 HOH H 24 247 37 HOH HOH . 
L 5 HOH H 25 248 38 HOH HOH . 
L 5 HOH H 26 249 39 HOH HOH . 
L 5 HOH H 27 250 43 HOH HOH . 
L 5 HOH H 28 251 45 HOH HOH . 
L 5 HOH H 29 252 48 HOH HOH . 
L 5 HOH H 30 253 51 HOH HOH . 
L 5 HOH H 31 254 57 HOH HOH . 
L 5 HOH H 32 255 59 HOH HOH . 
L 5 HOH H 33 256 60 HOH HOH . 
L 5 HOH H 34 257 61 HOH HOH . 
L 5 HOH H 35 258 62 HOH HOH . 
L 5 HOH H 36 259 63 HOH HOH . 
L 5 HOH H 37 260 66 HOH HOH . 
L 5 HOH H 38 261 68 HOH HOH . 
L 5 HOH H 39 262 69 HOH HOH . 
L 5 HOH H 40 263 71 HOH HOH . 
L 5 HOH H 41 264 82 HOH HOH . 
L 5 HOH H 42 265 83 HOH HOH . 
L 5 HOH H 43 266 88 HOH HOH . 
L 5 HOH H 44 267 89 HOH HOH . 
L 5 HOH H 45 268 92 HOH HOH . 
L 5 HOH H 46 269 93 HOH HOH . 
L 5 HOH H 47 270 94 HOH HOH . 
L 5 HOH H 48 271 95 HOH HOH . 
L 5 HOH H 49 272 98 HOH HOH . 
L 5 HOH H 50 273 101 HOH HOH . 
L 5 HOH H 51 274 106 HOH HOH . 
L 5 HOH H 52 275 107 HOH HOH . 
L 5 HOH H 53 276 108 HOH HOH . 
L 5 HOH H 54 277 109 HOH HOH . 
L 5 HOH H 55 278 111 HOH HOH . 
L 5 HOH H 56 279 112 HOH HOH . 
L 5 HOH H 57 280 113 HOH HOH . 
L 5 HOH H 58 281 119 HOH HOH . 
L 5 HOH H 59 282 120 HOH HOH . 
L 5 HOH H 60 283 127 HOH HOH . 
L 5 HOH H 61 284 128 HOH HOH . 
L 5 HOH H 62 285 138 HOH HOH . 
L 5 HOH H 63 286 139 HOH HOH . 
L 5 HOH H 64 287 140 HOH HOH . 
L 5 HOH H 65 288 141 HOH HOH . 
L 5 HOH H 66 289 144 HOH HOH . 
L 5 HOH H 67 290 145 HOH HOH . 
L 5 HOH H 68 291 146 HOH HOH . 
L 5 HOH H 69 292 147 HOH HOH . 
L 5 HOH H 70 293 148 HOH HOH . 
L 5 HOH H 71 294 150 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -50.816 
_atom_site.Cartn_y               35.353 
_atom_site.Cartn_z               71.227 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.7 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           558 
_atom_site.auth_asym_id          L 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           390 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#