data_1KNP
#
_model_server_result.job_id            ou3iXRzKvPmkYA-OWV8-3g 
_model_server_result.datetime_utc      '2025-03-05 04:23:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1knp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":800}' 
#
_entry.id    1KNP 
#
_exptl.entry_id    1KNP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KNP 
_cell.length_a            72.54 
_cell.length_b            72.54 
_cell.length_c            309.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KNP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 353 A THR 353 1_555 B NA NA . A NA 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc2 A O GLY 355 A GLY 355 1_555 B NA NA . A NA 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 A O GLU 375 A GLU 375 1_555 B NA NA . A NA 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc4 A O SER 377 A SER 377 1_555 B NA NA . A NA 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1KNP 
_atom_sites.fract_transf_matrix[1][1]    0.013785 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 541 1 NA HOH . 
C 3 FAD A 1 800 800 FAD FAD . 
D 4 SIN A 1 801 801 SIN ASS . 
E 5 HOH A 1 802 2 HOH HOH . 
E 5 HOH A 2 803 3 HOH HOH . 
E 5 HOH A 3 804 4 HOH HOH . 
E 5 HOH A 4 805 5 HOH HOH . 
E 5 HOH A 5 806 6 HOH HOH . 
E 5 HOH A 6 807 7 HOH HOH . 
E 5 HOH A 7 808 8 HOH HOH . 
E 5 HOH A 8 809 9 HOH HOH . 
E 5 HOH A 9 810 10 HOH HOH . 
E 5 HOH A 10 811 11 HOH HOH . 
E 5 HOH A 11 812 12 HOH HOH . 
E 5 HOH A 12 813 13 HOH HOH . 
E 5 HOH A 13 814 14 HOH HOH . 
E 5 HOH A 14 815 15 HOH HOH . 
E 5 HOH A 15 816 16 HOH HOH . 
E 5 HOH A 16 817 17 HOH HOH . 
E 5 HOH A 17 818 18 HOH HOH . 
E 5 HOH A 18 819 19 HOH HOH . 
E 5 HOH A 19 820 20 HOH HOH . 
E 5 HOH A 20 821 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 70.99 44.503 134.236 1 61.67 ? PA FAD 800 A 1 
HETATM 2 O O1A FAD . . . C 3 70.159 45.248 135.181 1 58.62 ? O1A FAD 800 A 1 
HETATM 3 O O2A FAD . . . C 3 70.254 43.344 133.598 1 62.28 ? O2A FAD 800 A 1 
HETATM 4 O O5B FAD . . . C 3 72.167 43.93 135.147 1 58.11 ? O5B FAD 800 A 1 
HETATM 5 C C5B FAD . . . C 3 73.195 44.705 135.671 1 53.99 ? C5B FAD 800 A 1 
HETATM 6 C C4B FAD . . . C 3 74.217 43.751 136.268 1 57.79 ? C4B FAD 800 A 1 
HETATM 7 O O4B FAD . . . C 3 75.209 44.555 136.804 1 62.34 ? O4B FAD 800 A 1 
HETATM 8 C C3B FAD . . . C 3 73.765 42.887 137.432 1 61.5 ? C3B FAD 800 A 1 
HETATM 9 O O3B FAD . . . C 3 74.402 41.628 137.332 1 60.57 ? O3B FAD 800 A 1 
HETATM 10 C C2B FAD . . . C 3 74.336 43.56 138.645 1 62.11 ? C2B FAD 800 A 1 
HETATM 11 O O2B FAD . . . C 3 74.785 42.581 139.534 1 66.76 ? O2B FAD 800 A 1 
HETATM 12 C C1B FAD . . . C 3 75.598 44.045 138.053 1 61.03 ? C1B FAD 800 A 1 
HETATM 13 N N9A FAD . . . C 3 76.059 45.081 138.927 1 59.63 ? N9A FAD 800 A 1 
HETATM 14 C C8A FAD . . . C 3 75.417 46.25 139.167 1 62.37 ? C8A FAD 800 A 1 
HETATM 15 N N7A FAD . . . C 3 76.15 46.992 140.015 1 59.19 ? N7A FAD 800 A 1 
HETATM 16 C C5A FAD . . . C 3 77.24 46.294 140.279 1 58.86 ? C5A FAD 800 A 1 
HETATM 17 C C6A FAD . . . C 3 78.3 46.607 141.079 1 60.97 ? C6A FAD 800 A 1 
HETATM 18 N N6A FAD . . . C 3 78.292 47.734 141.798 1 57.34 ? N6A FAD 800 A 1 
HETATM 19 N N1A FAD . . . C 3 79.298 45.662 141.154 1 62.35 ? N1A FAD 800 A 1 
HETATM 20 C C2A FAD . . . C 3 79.271 44.473 140.445 1 56.26 ? C2A FAD 800 A 1 
HETATM 21 N N3A FAD . . . C 3 78.208 44.166 139.663 1 58.94 ? N3A FAD 800 A 1 
HETATM 22 C C4A FAD . . . C 3 77.209 45.084 139.604 1 59.12 ? C4A FAD 800 A 1 
HETATM 23 N N1 FAD . . . C 3 63.604 46.088 128.296 1 61.91 ? N1 FAD 800 A 1 
HETATM 24 C C2 FAD . . . C 3 63.313 45.532 127.072 1 65.19 ? C2 FAD 800 A 1 
HETATM 25 O O2 FAD . . . C 3 63.981 45.862 126.093 1 60.31 ? O2 FAD 800 A 1 
HETATM 26 N N3 FAD . . . C 3 62.257 44.624 126.93 1 67.47 ? N3 FAD 800 A 1 
HETATM 27 C C4 FAD . . . C 3 61.521 44.285 128.04 1 67.01 ? C4 FAD 800 A 1 
HETATM 28 O O4 FAD . . . C 3 60.676 43.419 127.929 1 70.64 ? O4 FAD 800 A 1 
HETATM 29 C C4X FAD . . . C 3 61.844 44.815 129.285 1 64.75 ? C4X FAD 800 A 1 
HETATM 30 N N5 FAD . . . C 3 61.111 44.468 130.407 1 61.09 ? N5 FAD 800 A 1 
HETATM 31 C C5X FAD . . . C 3 61.489 45.064 131.592 1 61.87 ? C5X FAD 800 A 1 
HETATM 32 C C6 FAD . . . C 3 60.807 44.754 132.732 1 60.85 ? C6 FAD 800 A 1 
HETATM 33 C C7 FAD . . . C 3 61.177 45.219 133.977 1 62.59 ? C7 FAD 800 A 1 
HETATM 34 C C7M FAD . . . C 3 60.361 44.812 135.211 1 56.18 ? C7M FAD 800 A 1 
HETATM 35 C C8 FAD . . . C 3 62.326 46.05 134.043 1 61.23 ? C8 FAD 800 A 1 
HETATM 36 C C8M FAD . . . C 3 62.874 46.532 135.352 1 53.77 ? C8M FAD 800 A 1 
HETATM 37 C C9 FAD . . . C 3 63.042 46.361 132.897 1 61.66 ? C9 FAD 800 A 1 
HETATM 38 C C9A FAD . . . C 3 62.615 45.89 131.676 1 63.71 ? C9A FAD 800 A 1 
HETATM 39 N N10 FAD . . . C 3 63.311 46.244 130.546 1 62.27 ? N10 FAD 800 A 1 
HETATM 40 C C10 FAD . . . C 3 62.902 45.719 129.372 1 61.43 ? C10 FAD 800 A 1 
HETATM 41 C C1' FAD . . . C 3 64.372 47.284 130.544 1 61.33 ? C1' FAD 800 A 1 
HETATM 42 C C2' FAD . . . C 3 65.559 46.423 130.33 1 61.43 ? C2' FAD 800 A 1 
HETATM 43 O O2' FAD . . . C 3 64.967 45.326 130.944 1 60.97 ? O2' FAD 800 A 1 
HETATM 44 C C3' FAD . . . C 3 66.835 46.786 131.075 1 63.26 ? C3' FAD 800 A 1 
HETATM 45 O O3' FAD . . . C 3 67.297 48.095 130.808 1 65.89 ? O3' FAD 800 A 1 
HETATM 46 C C4' FAD . . . C 3 67.965 45.855 130.719 1 63.99 ? C4' FAD 800 A 1 
HETATM 47 O O4' FAD . . . C 3 67.641 44.641 131.345 1 64.93 ? O4' FAD 800 A 1 
HETATM 48 C C5' FAD . . . C 3 69.264 46.384 131.335 1 66.23 ? C5' FAD 800 A 1 
HETATM 49 O O5' FAD . . . C 3 70.19 45.308 131.303 1 68.17 ? O5' FAD 800 A 1 
HETATM 50 P P FAD . . . C 3 71.739 45.392 131.635 1 58.35 ? P FAD 800 A 1 
HETATM 51 O O1P FAD . . . C 3 72.496 44.279 131.075 1 61.78 ? O1P FAD 800 A 1 
HETATM 52 O O2P FAD . . . C 3 72.251 46.646 131.017 1 60.58 ? O2P FAD 800 A 1 
HETATM 53 O O3P FAD . . . C 3 71.782 45.458 133.21 1 60.24 ? O3P FAD 800 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#