data_1KNY # _model_server_result.job_id iGez6htPrJFeGvOyrYO8bQ _model_server_result.datetime_utc '2025-02-27 06:16:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":603}' # _entry.id 1KNY # _exptl.entry_id 1KNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KNY _cell.length_a 57.3 _cell.length_b 102.2 _cell.length_c 108.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 52 A GLU 52 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc2 A OE1 GLU 52 A GLU 52 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc3 D O1G APC . A APC 556 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 D O2B APC . A APC 556 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc5 B OE1 GLU 52 B GLU 52 1_555 F MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc6 B OE2 GLU 52 B GLU 52 1_555 F MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc7 G O1G APC . B APC 557 1_555 F MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 G O2B APC . B APC 557 1_555 F MG MG . B MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KNY _atom_sites.fract_transf_matrix[1][1] 0.017452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009191 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 603 603 MG MG . D 3 APC A 1 556 556 APC APC . E 4 KAN A 1 558 558 KAN KAN . F 2 MG B 1 604 604 MG MG . G 3 APC B 1 557 557 APC APC . H 4 KAN B 1 559 559 KAN KAN . I 5 HOH A 1 604 1 HOH HOH . I 5 HOH A 2 605 2 HOH HOH . I 5 HOH A 3 606 3 HOH HOH . I 5 HOH A 4 607 4 HOH HOH . I 5 HOH A 5 608 5 HOH HOH . I 5 HOH A 6 609 6 HOH HOH . I 5 HOH A 7 610 7 HOH HOH . I 5 HOH A 8 611 12 HOH HOH . I 5 HOH A 9 612 14 HOH HOH . I 5 HOH A 10 613 15 HOH HOH . I 5 HOH A 11 614 16 HOH HOH . I 5 HOH A 12 615 17 HOH HOH . I 5 HOH A 13 616 18 HOH HOH . I 5 HOH A 14 617 19 HOH HOH . I 5 HOH A 15 618 20 HOH HOH . I 5 HOH A 16 619 21 HOH HOH . I 5 HOH A 17 620 22 HOH HOH . I 5 HOH A 18 621 23 HOH HOH . I 5 HOH A 19 622 24 HOH HOH . I 5 HOH A 20 623 25 HOH HOH . I 5 HOH A 21 624 34 HOH HOH . I 5 HOH A 22 625 35 HOH HOH . I 5 HOH A 23 626 36 HOH HOH . I 5 HOH A 24 627 37 HOH HOH . I 5 HOH A 25 628 38 HOH HOH . I 5 HOH A 26 629 39 HOH HOH . I 5 HOH A 27 630 40 HOH HOH . I 5 HOH A 28 631 42 HOH HOH . J 5 HOH B 1 605 8 HOH HOH . J 5 HOH B 2 606 9 HOH HOH . J 5 HOH B 3 607 10 HOH HOH . J 5 HOH B 4 608 11 HOH HOH . J 5 HOH B 5 609 13 HOH HOH . J 5 HOH B 6 610 26 HOH HOH . J 5 HOH B 7 611 27 HOH HOH . J 5 HOH B 8 612 28 HOH HOH . J 5 HOH B 9 613 29 HOH HOH . J 5 HOH B 10 614 30 HOH HOH . J 5 HOH B 11 615 31 HOH HOH . J 5 HOH B 12 616 32 HOH HOH . J 5 HOH B 13 617 33 HOH HOH . J 5 HOH B 14 618 41 HOH HOH . J 5 HOH B 15 619 43 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.13 _atom_site.Cartn_y 41.317 _atom_site.Cartn_z 40.808 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #