data_1KO5 # _model_server_result.job_id 7iOo-MVZG23pUG-sV25n6A _model_server_result.datetime_utc '2025-06-16 18:41:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ko5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 1KO5 # _exptl.entry_id 1KO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.14 _cell.angle_gamma 90 _cell.entry_id 1KO5 _cell.length_a 43.274 _cell.length_b 89.206 _cell.length_c 51.479 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 22 A SER 22 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 D O3G ATP . A ATP 302 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 D O1B ATP . A ATP 302 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc4 C MG MG . A MG 1001 1_555 G O HOH . A HOH 1011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 C MG MG . A MG 1001 1_555 G O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc6 C MG MG . A MG 1001 1_555 G O HOH . A HOH 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc7 B OG SER 22 B SER 22 1_555 E MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc8 F O3G ATP . B ATP 303 1_555 E MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc9 F O1B ATP . B ATP 303 1_555 E MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc10 E MG MG . B MG 1002 1_555 H O HOH . B HOH 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc11 E MG MG . B MG 1002 1_555 H O HOH . B HOH 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc12 E MG MG . B MG 1002 1_555 H O HOH . B HOH 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.691 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1KO5 _atom_sites.fract_transf_matrix[1][1] 0.023109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006253 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1001 1 MG MG . D 3 ATP A 1 302 302 ATP ATP . E 2 MG B 1 1002 2 MG MG . F 3 ATP B 1 303 303 ATP ATP . G 4 HOH A 1 1002 2 HOH HOH . G 4 HOH A 2 1003 3 HOH HOH . G 4 HOH A 3 1004 4 HOH HOH . G 4 HOH A 4 1005 5 HOH HOH . G 4 HOH A 5 1006 6 HOH HOH . G 4 HOH A 6 1007 8 HOH HOH . G 4 HOH A 7 1008 9 HOH HOH . G 4 HOH A 8 1009 10 HOH HOH . G 4 HOH A 9 1010 11 HOH HOH . G 4 HOH A 10 1011 13 HOH HOH . G 4 HOH A 11 1012 14 HOH HOH . G 4 HOH A 12 1013 15 HOH HOH . G 4 HOH A 13 1014 16 HOH HOH . G 4 HOH A 14 1015 18 HOH HOH . G 4 HOH A 15 1016 19 HOH HOH . G 4 HOH A 16 1017 20 HOH HOH . G 4 HOH A 17 1018 21 HOH HOH . G 4 HOH A 18 1019 22 HOH HOH . G 4 HOH A 19 1020 23 HOH HOH . G 4 HOH A 20 1021 24 HOH HOH . G 4 HOH A 21 1022 25 HOH HOH . G 4 HOH A 22 1023 26 HOH HOH . G 4 HOH A 23 1024 27 HOH HOH . G 4 HOH A 24 1025 28 HOH HOH . G 4 HOH A 25 1026 29 HOH HOH . G 4 HOH A 26 1027 30 HOH HOH . G 4 HOH A 27 1028 32 HOH HOH . G 4 HOH A 28 1029 33 HOH HOH . G 4 HOH A 29 1030 34 HOH HOH . G 4 HOH A 30 1031 37 HOH HOH . G 4 HOH A 31 1032 38 HOH HOH . G 4 HOH A 32 1033 39 HOH HOH . G 4 HOH A 33 1034 40 HOH HOH . G 4 HOH A 34 1035 41 HOH HOH . G 4 HOH A 35 1036 42 HOH HOH . G 4 HOH A 36 1037 44 HOH HOH . G 4 HOH A 37 1038 46 HOH HOH . G 4 HOH A 38 1039 47 HOH HOH . G 4 HOH A 39 1040 48 HOH HOH . G 4 HOH A 40 1041 50 HOH HOH . G 4 HOH A 41 1042 55 HOH HOH . G 4 HOH A 42 1043 56 HOH HOH . G 4 HOH A 43 1044 57 HOH HOH . G 4 HOH A 44 1045 58 HOH HOH . G 4 HOH A 45 1046 59 HOH HOH . G 4 HOH A 46 1047 62 HOH HOH . G 4 HOH A 47 1048 65 HOH HOH . G 4 HOH A 48 1049 66 HOH HOH . G 4 HOH A 49 1050 67 HOH HOH . G 4 HOH A 50 1051 68 HOH HOH . G 4 HOH A 51 1052 70 HOH HOH . G 4 HOH A 52 1053 73 HOH HOH . G 4 HOH A 53 1054 74 HOH HOH . G 4 HOH A 54 1055 76 HOH HOH . G 4 HOH A 55 1056 77 HOH HOH . G 4 HOH A 56 1057 80 HOH HOH . G 4 HOH A 57 1058 83 HOH HOH . G 4 HOH A 58 1059 86 HOH HOH . G 4 HOH A 59 1060 91 HOH HOH . G 4 HOH A 60 1061 92 HOH HOH . H 4 HOH B 1 1003 1 HOH HOH . H 4 HOH B 2 1004 7 HOH HOH . H 4 HOH B 3 1005 12 HOH HOH . H 4 HOH B 4 1006 17 HOH HOH . H 4 HOH B 5 1007 31 HOH HOH . H 4 HOH B 6 1008 35 HOH HOH . H 4 HOH B 7 1009 36 HOH HOH . H 4 HOH B 8 1010 43 HOH HOH . H 4 HOH B 9 1011 45 HOH HOH . H 4 HOH B 10 1012 49 HOH HOH . H 4 HOH B 11 1013 51 HOH HOH . H 4 HOH B 12 1014 52 HOH HOH . H 4 HOH B 13 1015 53 HOH HOH . H 4 HOH B 14 1016 54 HOH HOH . H 4 HOH B 15 1017 60 HOH HOH . H 4 HOH B 16 1018 61 HOH HOH . H 4 HOH B 17 1019 63 HOH HOH . H 4 HOH B 18 1020 64 HOH HOH . H 4 HOH B 19 1021 69 HOH HOH . H 4 HOH B 20 1022 71 HOH HOH . H 4 HOH B 21 1023 72 HOH HOH . H 4 HOH B 22 1024 75 HOH HOH . H 4 HOH B 23 1025 78 HOH HOH . H 4 HOH B 24 1026 79 HOH HOH . H 4 HOH B 25 1027 81 HOH HOH . H 4 HOH B 26 1028 82 HOH HOH . H 4 HOH B 27 1029 84 HOH HOH . H 4 HOH B 28 1030 85 HOH HOH . H 4 HOH B 29 1031 87 HOH HOH . H 4 HOH B 30 1032 88 HOH HOH . H 4 HOH B 31 1033 89 HOH HOH . H 4 HOH B 32 1034 90 HOH HOH . H 4 HOH B 33 1035 93 HOH HOH . H 4 HOH B 34 1036 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . F 3 2.93 15.082 10.703 1 29.5 ? PG ATP 303 B 1 HETATM 2 O O1G ATP . . . F 3 3.07 16.428 11.274 1 27.19 ? O1G ATP 303 B 1 HETATM 3 O O2G ATP . . . F 3 4.227 14.547 10.072 1 31.85 ? O2G ATP 303 B 1 HETATM 4 O O3G ATP . . . F 3 2.421 14.068 11.723 1 29.1 ? O3G ATP 303 B 1 HETATM 5 P PB ATP . . . F 3 1.336 14.041 8.65 1 24.02 ? PB ATP 303 B 1 HETATM 6 O O1B ATP . . . F 3 1.311 12.77 9.398 1 23.68 ? O1B ATP 303 B 1 HETATM 7 O O2B ATP . . . F 3 2.034 13.946 7.285 1 26.37 ? O2B ATP 303 B 1 HETATM 8 O O3B ATP . . . F 3 1.892 15.268 9.501 1 28.8 ? O3B ATP 303 B 1 HETATM 9 P PA ATP . . . F 3 -1.499 14.142 9.044 1 27.19 ? PA ATP 303 B 1 HETATM 10 O O1A ATP . . . F 3 -1.829 12.766 8.607 1 24.88 ? O1A ATP 303 B 1 HETATM 11 O O2A ATP . . . F 3 -1.501 14.319 10.576 1 25.41 ? O2A ATP 303 B 1 HETATM 12 O O3A ATP . . . F 3 -0.122 14.631 8.374 1 26.08 ? O3A ATP 303 B 1 HETATM 13 O O5' ATP . . . F 3 -2.533 15.167 8.364 1 28.49 ? O5' ATP 303 B 1 HETATM 14 C C5' ATP . . . F 3 -2.513 16.574 8.49 1 28.82 ? C5' ATP 303 B 1 HETATM 15 C C4' ATP . . . F 3 -3.965 17.015 8.732 1 31.93 ? C4' ATP 303 B 1 HETATM 16 O O4' ATP . . . F 3 -4.695 17.115 7.527 1 31.82 ? O4' ATP 303 B 1 HETATM 17 C C3' ATP . . . F 3 -4.656 15.956 9.559 1 32.92 ? C3' ATP 303 B 1 HETATM 18 O O3' ATP . . . F 3 -5.475 16.602 10.491 1 35.35 ? O3' ATP 303 B 1 HETATM 19 C C2' ATP . . . F 3 -5.527 15.179 8.605 1 33.47 ? C2' ATP 303 B 1 HETATM 20 O O2' ATP . . . F 3 -6.71 14.858 9.308 1 33.75 ? O2' ATP 303 B 1 HETATM 21 C C1' ATP . . . F 3 -5.743 16.154 7.456 1 34.63 ? C1' ATP 303 B 1 HETATM 22 N N9 ATP . . . F 3 -5.688 15.549 6.097 1 37.28 ? N9 ATP 303 B 1 HETATM 23 C C8 ATP . . . F 3 -4.796 14.62 5.642 1 36.76 ? C8 ATP 303 B 1 HETATM 24 N N7 ATP . . . F 3 -5.054 14.356 4.347 1 36.02 ? N7 ATP 303 B 1 HETATM 25 C C5 ATP . . . F 3 -6.082 15.115 3.946 1 38.02 ? C5 ATP 303 B 1 HETATM 26 C C6 ATP . . . F 3 -6.739 15.216 2.719 1 38.88 ? C6 ATP 303 B 1 HETATM 27 N N6 ATP . . . F 3 -6.091 14.856 1.616 1 38.6 ? N6 ATP 303 B 1 HETATM 28 N N1 ATP . . . F 3 -7.79 16.095 2.604 1 38.38 ? N1 ATP 303 B 1 HETATM 29 C C2 ATP . . . F 3 -8.174 16.842 3.701 1 37.92 ? C2 ATP 303 B 1 HETATM 30 N N3 ATP . . . F 3 -7.523 16.718 4.905 1 36.77 ? N3 ATP 303 B 1 HETATM 31 C C4 ATP . . . F 3 -6.487 15.875 5.03 1 37.23 ? C4 ATP 303 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 1241 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 31 #