data_1KO8 # _model_server_result.job_id ej7DxeqD3XUAqhNv4cZzPw _model_server_result.datetime_utc '2025-07-04 21:43:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ko8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 1KO8 # _exptl.entry_id 1KO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.135 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-PHOSPHOGLUCONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.69 _cell.angle_gamma 90 _cell.entry_id 1KO8 _cell.length_a 44.79 _cell.length_b 89.12 _cell.length_c 51.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 22 A SER 22 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 D MG MG . A MG 201 1_555 C O3P 6PG . A 6PG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc3 D MG MG . A MG 201 1_555 F O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 D MG MG . A MG 201 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 D MG MG . A MG 201 1_555 F O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc6 D MG MG . A MG 201 1_555 F O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc7 D MG MG . A MG 201 1_555 F O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? # _chem_comp.formula 'C6 H13 O10 P' _chem_comp.formula_weight 276.135 _chem_comp.id 6PG _chem_comp.mon_nstd_flag . _chem_comp.name '6-PHOSPHOGLUCONIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 6PG sing 1 n n C1 O1A 6PG doub 2 n n C1 O1 6PG sing 3 n n C2 C3 6PG sing 4 n n C2 O2 6PG sing 5 n n C2 H2 6PG sing 6 n n C3 C4 6PG sing 7 n n C3 O3 6PG sing 8 n n C3 H3 6PG sing 9 n n C4 C5 6PG sing 10 n n C4 O4 6PG sing 11 n n C4 H4 6PG sing 12 n n C5 C6 6PG sing 13 n n C5 O5 6PG sing 14 n n C5 H5 6PG sing 15 n n C6 O6 6PG sing 16 n n C6 H61 6PG sing 17 n n C6 H62 6PG sing 18 n n O1 HO1 6PG sing 19 n n O2 HO2 6PG sing 20 n n O3 HO3 6PG sing 21 n n O4 HO4 6PG sing 22 n n O5 HO5 6PG sing 23 n n O6 P 6PG sing 24 n n P O1P 6PG doub 25 n n P O2P 6PG sing 26 n n P O3P 6PG sing 27 n n O2P HOP2 6PG sing 28 n n O3P HOP3 6PG sing 29 n n # _atom_sites.entry_id 1KO8 _atom_sites.fract_transf_matrix[1][1] 0.022326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6PG A 1 502 502 6PG 6PG . D 3 MG A 1 201 201 MG MG . E 2 6PG B 1 503 503 6PG 6PG . F 4 HOH A 1 503 1 HOH HOH . F 4 HOH A 2 504 2 HOH HOH . F 4 HOH A 3 505 3 HOH HOH . F 4 HOH A 4 506 6 HOH HOH . F 4 HOH A 5 507 7 HOH HOH . F 4 HOH A 6 508 8 HOH HOH . F 4 HOH A 7 509 9 HOH HOH . F 4 HOH A 8 510 12 HOH HOH . F 4 HOH A 9 511 15 HOH HOH . F 4 HOH A 10 512 16 HOH HOH . F 4 HOH A 11 513 17 HOH HOH . F 4 HOH A 12 514 18 HOH HOH . F 4 HOH A 13 515 19 HOH HOH . F 4 HOH A 14 516 20 HOH HOH . F 4 HOH A 15 517 24 HOH HOH . F 4 HOH A 16 518 30 HOH HOH . F 4 HOH A 17 519 31 HOH HOH . F 4 HOH A 18 520 32 HOH HOH . F 4 HOH A 19 521 34 HOH HOH . G 4 HOH B 1 504 4 HOH HOH . G 4 HOH B 2 505 5 HOH HOH . G 4 HOH B 3 506 10 HOH HOH . G 4 HOH B 4 507 11 HOH HOH . G 4 HOH B 5 508 13 HOH HOH . G 4 HOH B 6 509 14 HOH HOH . G 4 HOH B 7 510 21 HOH HOH . G 4 HOH B 8 511 22 HOH HOH . G 4 HOH B 9 512 23 HOH HOH . G 4 HOH B 10 513 25 HOH HOH . G 4 HOH B 11 514 26 HOH HOH . G 4 HOH B 12 515 27 HOH HOH . G 4 HOH B 13 516 28 HOH HOH . G 4 HOH B 14 517 29 HOH HOH . G 4 HOH B 15 518 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6PG . . . E 2 2.248 22.022 12.633 0.5 53.14 ? C1 6PG 503 B 1 HETATM 2 C C2 6PG . . . E 2 2.439 20.505 12.778 0.5 51.65 ? C2 6PG 503 B 1 HETATM 3 C C3 6PG . . . E 2 1.186 19.715 13.125 0.5 52.52 ? C3 6PG 503 B 1 HETATM 4 C C4 6PG . . . E 2 1.402 18.528 14.096 0.5 51.06 ? C4 6PG 503 B 1 HETATM 5 C C5 6PG . . . E 2 1.072 17.195 13.448 0.5 49 ? C5 6PG 503 B 1 HETATM 6 C C6 6PG . . . E 2 2.225 16.198 13.623 0.5 47.17 ? C6 6PG 503 B 1 HETATM 7 O O1A 6PG . . . E 2 1.446 22.692 13.423 0.5 52.43 ? O1A 6PG 503 B 1 HETATM 8 O O1 6PG . . . E 2 2.926 22.652 11.703 0.5 50.65 ? O1 6PG 503 B 1 HETATM 9 O O2 6PG . . . E 2 2.867 20.019 11.535 0.5 51.23 ? O2 6PG 503 B 1 HETATM 10 O O3 6PG . . . E 2 0.669 19.221 11.909 0.5 53.19 ? O3 6PG 503 B 1 HETATM 11 O O4 6PG . . . E 2 2.722 18.433 14.593 0.5 51.69 ? O4 6PG 503 B 1 HETATM 12 O O5 6PG . . . E 2 -0.103 16.697 14.038 0.5 51.13 ? O5 6PG 503 B 1 HETATM 13 O O6 6PG . . . E 2 3.006 16.18 12.44 0.5 42.94 ? O6 6PG 503 B 1 HETATM 14 P P 6PG . . . E 2 3.529 14.83 11.744 0.5 41.08 ? P 6PG 503 B 1 HETATM 15 O O1P 6PG . . . E 2 5.002 14.778 11.89 0.5 40.27 ? O1P 6PG 503 B 1 HETATM 16 O O2P 6PG . . . E 2 3.104 14.89 10.27 0.5 41.56 ? O2P 6PG 503 B 1 HETATM 17 O O3P 6PG . . . E 2 2.966 13.53 12.333 0.5 38.73 ? O3P 6PG 503 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 17 #