data_1KOC # _model_server_result.job_id YNz6NUMrEmUxmHVevLOI3Q _model_server_result.datetime_utc '2025-03-05 02:18:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1koc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 1KOC # _exptl.entry_id 1KOC _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 175.209 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KOC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KOC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'A-U PAIR' hydrog1 A N1 A 1 A A 5 1_555 B N3 U 14 B U 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 G 2 A G 6 1_555 B N3 C 13 B C 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N2 G 2 A G 6 1_555 B O2 C 13 B C 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O6 G 2 A G 6 1_555 B N4 C 13 B C 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog5 A N1 A 3 A A 7 1_555 B N1 G 12 B G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog6 A N6 A 3 A A 7 1_555 B O6 G 12 B G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog7 A N6 A 3 A A 7 1_555 B N3 C 13 B C 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog8 A O6 G 5 A G 9 1_555 A N4 C 9 A C 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog9 A N1 G 6 A G 10 1_555 B O2 C 11 B C 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog10 A N1 G 6 A G 10 1_555 B N3 G 12 B G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog11 A N1 A 7 A A 11 1_555 B N3 U 10 B U 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A N1 G 8 A G 12 1_555 B O6 G 9 B G 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N2 G 8 A G 12 1_555 B N7 G 9 B G 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog14 A N4 C 9 A C 13 1_555 B N1 A 3 B A 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog15 A N1 G 10 A G 14 1_555 B N3 C 2 B C 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog16 B N1 G 8 B G 34 1_555 B O6 G 12 B G 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 40 n n N H ARG sing 41 n n N H2 ARG sing 42 n n CA C ARG sing 43 n n CA CB ARG sing 44 n n CA HA ARG sing 45 n n C O ARG doub 46 n n C OXT ARG sing 47 n n CB CG ARG sing 48 n n CB HB2 ARG sing 49 n n CB HB3 ARG sing 50 n n CG CD ARG sing 51 n n CG HG2 ARG sing 52 n n CG HG3 ARG sing 53 n n CD NE ARG sing 54 n n CD HD2 ARG sing 55 n n CD HD3 ARG sing 56 n n NE CZ ARG sing 57 n n NE HE ARG sing 58 n n CZ NH1 ARG sing 59 n n CZ NH2 ARG doub 60 n n NH1 HH11 ARG sing 61 n n NH1 HH12 ARG sing 62 n n NH2 HH21 ARG sing 63 n n NH2 HH22 ARG sing 64 n n OXT HXT ARG sing 65 n n # _atom_sites.entry_id 1KOC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id ARG _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id ARG _pdbx_nonpoly_scheme.auth_mon_id ARG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . C 3 4.336 8.19 30.762 1 0 ? N ARG 1 B 1 HETATM 2 C CA ARG . . . C 3 3.822 6.798 30.938 1 0 ? CA ARG 1 B 1 HETATM 3 C C ARG . . . C 3 4.575 6.128 32.104 1 0 ? C ARG 1 B 1 HETATM 4 O O ARG . . . C 3 3.919 5.723 33.052 1 0 ? O ARG 1 B 1 HETATM 5 C CB ARG . . . C 3 4.031 6.008 29.618 1 0 ? CB ARG 1 B 1 HETATM 6 C CG ARG . . . C 3 4.155 4.504 29.889 1 0 ? CG ARG 1 B 1 HETATM 7 C CD ARG . . . C 3 2.859 3.986 30.503 1 0 ? CD ARG 1 B 1 HETATM 8 N NE ARG . . . C 3 2.865 2.494 30.517 1 0 ? NE ARG 1 B 1 HETATM 9 C CZ ARG . . . C 3 1.881 1.834 31.079 1 0 ? CZ ARG 1 B 1 HETATM 10 N NH1 ARG . . . C 3 0.653 2.283 30.999 1 0 ? NH1 ARG 1 B 1 HETATM 11 N NH2 ARG . . . C 3 2.125 0.72 31.718 1 0 ? NH2 ARG 1 B 1 HETATM 12 O OXT ARG . . . C 3 5.792 6.041 32.036 1 0 ? OXT ARG 1 B 1 HETATM 13 H HA ARG . . . C 3 2.759 6.841 31.174 1 0 ? HA ARG 1 B 1 HETATM 14 H HE ARG . . . C 3 3.608 2.005 30.102 1 0 ? HE ARG 1 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #