data_1KP3 # _model_server_result.job_id 80bWrjB1dactEd8ugWC1Gg _model_server_result.datetime_utc '2025-01-11 11:58:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":457}' # _entry.id 1KP3 # _exptl.entry_id 1KP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KP3 _cell.length_a 76.478 _cell.length_b 104.222 _cell.length_c 128.835 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 76.478 0 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 76.478 0 128.835 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 128.835 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1KP3 _atom_sites.fract_transf_matrix[1][1] 0.013076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 456 6 PO4 PO4 . C 3 ATP A 1 457 1 ATP ATP . D 4 CIR A 1 458 2 CIR CIR . E 4 CIR A 1 459 3 CIR CIR . F 5 GAI A 1 460 4 GAI GAI . G 5 GAI A 1 461 5 GAI GAI . H 6 HOH A 1 462 1 HOH HOH . H 6 HOH A 2 463 2 HOH HOH . H 6 HOH A 3 464 3 HOH HOH . H 6 HOH A 4 465 4 HOH HOH . H 6 HOH A 5 466 5 HOH HOH . H 6 HOH A 6 467 6 HOH HOH . H 6 HOH A 7 468 7 HOH HOH . H 6 HOH A 8 469 8 HOH HOH . H 6 HOH A 9 470 9 HOH HOH . H 6 HOH A 10 471 10 HOH HOH . H 6 HOH A 11 472 11 HOH HOH . H 6 HOH A 12 473 12 HOH HOH . H 6 HOH A 13 474 13 HOH HOH . H 6 HOH A 14 475 14 HOH HOH . H 6 HOH A 15 476 15 HOH HOH . H 6 HOH A 16 477 16 HOH HOH . H 6 HOH A 17 478 17 HOH HOH . H 6 HOH A 18 479 18 HOH HOH . H 6 HOH A 19 480 19 HOH HOH . H 6 HOH A 20 481 20 HOH HOH . H 6 HOH A 21 482 21 HOH HOH . H 6 HOH A 22 483 22 HOH HOH . H 6 HOH A 23 484 23 HOH HOH . H 6 HOH A 24 485 24 HOH HOH . H 6 HOH A 25 486 25 HOH HOH . H 6 HOH A 26 487 26 HOH HOH . H 6 HOH A 27 488 27 HOH HOH . H 6 HOH A 28 489 28 HOH HOH . H 6 HOH A 29 490 29 HOH HOH . H 6 HOH A 30 491 30 HOH HOH . H 6 HOH A 31 492 31 HOH HOH . H 6 HOH A 32 493 32 HOH HOH . H 6 HOH A 33 494 33 HOH HOH . H 6 HOH A 34 495 34 HOH HOH . H 6 HOH A 35 496 35 HOH HOH . H 6 HOH A 36 497 36 HOH HOH . H 6 HOH A 37 498 37 HOH HOH . H 6 HOH A 38 499 38 HOH HOH . H 6 HOH A 39 500 39 HOH HOH . H 6 HOH A 40 501 40 HOH HOH . H 6 HOH A 41 502 41 HOH HOH . H 6 HOH A 42 503 42 HOH HOH . H 6 HOH A 43 504 43 HOH HOH . H 6 HOH A 44 505 44 HOH HOH . H 6 HOH A 45 506 45 HOH HOH . H 6 HOH A 46 507 46 HOH HOH . H 6 HOH A 47 508 47 HOH HOH . H 6 HOH A 48 509 48 HOH HOH . H 6 HOH A 49 510 49 HOH HOH . H 6 HOH A 50 511 50 HOH HOH . H 6 HOH A 51 512 51 HOH HOH . H 6 HOH A 52 513 52 HOH HOH . H 6 HOH A 53 514 53 HOH HOH . H 6 HOH A 54 515 54 HOH HOH . H 6 HOH A 55 516 55 HOH HOH . H 6 HOH A 56 517 56 HOH HOH . H 6 HOH A 57 518 57 HOH HOH . H 6 HOH A 58 519 58 HOH HOH . H 6 HOH A 59 520 59 HOH HOH . H 6 HOH A 60 521 60 HOH HOH . H 6 HOH A 61 522 61 HOH HOH . H 6 HOH A 62 523 62 HOH HOH . H 6 HOH A 63 524 63 HOH HOH . H 6 HOH A 64 525 64 HOH HOH . H 6 HOH A 65 526 65 HOH HOH . H 6 HOH A 66 527 66 HOH HOH . H 6 HOH A 67 528 67 HOH HOH . H 6 HOH A 68 529 68 HOH HOH . H 6 HOH A 69 530 69 HOH HOH . H 6 HOH A 70 531 70 HOH HOH . H 6 HOH A 71 532 71 HOH HOH . H 6 HOH A 72 533 72 HOH HOH . H 6 HOH A 73 534 73 HOH HOH . H 6 HOH A 74 535 74 HOH HOH . H 6 HOH A 75 536 75 HOH HOH . H 6 HOH A 76 537 76 HOH HOH . H 6 HOH A 77 538 77 HOH HOH . H 6 HOH A 78 539 78 HOH HOH . H 6 HOH A 79 540 79 HOH HOH . H 6 HOH A 80 541 80 HOH HOH . H 6 HOH A 81 542 81 HOH HOH . H 6 HOH A 82 543 82 HOH HOH . H 6 HOH A 83 544 83 HOH HOH . H 6 HOH A 84 545 84 HOH HOH . H 6 HOH A 85 546 85 HOH HOH . H 6 HOH A 86 547 86 HOH HOH . H 6 HOH A 87 548 87 HOH HOH . H 6 HOH A 88 549 88 HOH HOH . H 6 HOH A 89 550 89 HOH HOH . H 6 HOH A 90 551 90 HOH HOH . H 6 HOH A 91 552 91 HOH HOH . H 6 HOH A 92 553 92 HOH HOH . H 6 HOH A 93 554 93 HOH HOH . H 6 HOH A 94 555 94 HOH HOH . H 6 HOH A 95 556 95 HOH HOH . H 6 HOH A 96 557 96 HOH HOH . H 6 HOH A 97 558 97 HOH HOH . H 6 HOH A 98 559 98 HOH HOH . H 6 HOH A 99 560 99 HOH HOH . H 6 HOH A 100 561 100 HOH HOH . H 6 HOH A 101 562 101 HOH HOH . H 6 HOH A 102 563 102 HOH HOH . H 6 HOH A 103 564 103 HOH HOH . H 6 HOH A 104 565 104 HOH HOH . H 6 HOH A 105 566 105 HOH HOH . H 6 HOH A 106 567 106 HOH HOH . H 6 HOH A 107 568 107 HOH HOH . H 6 HOH A 108 569 108 HOH HOH . H 6 HOH A 109 570 109 HOH HOH . H 6 HOH A 110 571 110 HOH HOH . H 6 HOH A 111 572 111 HOH HOH . H 6 HOH A 112 573 112 HOH HOH . H 6 HOH A 113 574 113 HOH HOH . H 6 HOH A 114 575 114 HOH HOH . H 6 HOH A 115 576 115 HOH HOH . H 6 HOH A 116 577 116 HOH HOH . H 6 HOH A 117 578 117 HOH HOH . H 6 HOH A 118 579 118 HOH HOH . H 6 HOH A 119 580 119 HOH HOH . H 6 HOH A 120 581 120 HOH HOH . H 6 HOH A 121 582 121 HOH HOH . H 6 HOH A 122 583 122 HOH HOH . H 6 HOH A 123 584 123 HOH HOH . H 6 HOH A 124 585 124 HOH HOH . H 6 HOH A 125 586 126 HOH HOH . H 6 HOH A 126 587 127 HOH HOH . H 6 HOH A 127 588 128 HOH HOH . H 6 HOH A 128 589 129 HOH HOH . H 6 HOH A 129 590 130 HOH HOH . H 6 HOH A 130 591 131 HOH HOH . H 6 HOH A 131 592 132 HOH HOH . H 6 HOH A 132 593 133 HOH HOH . H 6 HOH A 133 594 134 HOH HOH . H 6 HOH A 134 595 135 HOH HOH . H 6 HOH A 135 596 136 HOH HOH . H 6 HOH A 136 597 137 HOH HOH . H 6 HOH A 137 598 138 HOH HOH . H 6 HOH A 138 599 139 HOH HOH . H 6 HOH A 139 600 140 HOH HOH . H 6 HOH A 140 601 141 HOH HOH . H 6 HOH A 141 602 142 HOH HOH . H 6 HOH A 142 603 143 HOH HOH . H 6 HOH A 143 604 144 HOH HOH . H 6 HOH A 144 605 145 HOH HOH . H 6 HOH A 145 606 146 HOH HOH . H 6 HOH A 146 607 147 HOH HOH . H 6 HOH A 147 608 148 HOH HOH . H 6 HOH A 148 609 149 HOH HOH . H 6 HOH A 149 610 150 HOH HOH . H 6 HOH A 150 611 151 HOH HOH . H 6 HOH A 151 612 152 HOH HOH . H 6 HOH A 152 613 153 HOH HOH . H 6 HOH A 153 614 154 HOH HOH . H 6 HOH A 154 615 155 HOH HOH . H 6 HOH A 155 616 156 HOH HOH . H 6 HOH A 156 617 157 HOH HOH . H 6 HOH A 157 618 158 HOH HOH . H 6 HOH A 158 619 159 HOH HOH . H 6 HOH A 159 620 160 HOH HOH . H 6 HOH A 160 621 161 HOH HOH . H 6 HOH A 161 622 162 HOH HOH . H 6 HOH A 162 623 163 HOH HOH . H 6 HOH A 163 624 164 HOH HOH . H 6 HOH A 164 625 165 HOH HOH . H 6 HOH A 165 626 166 HOH HOH . H 6 HOH A 166 627 167 HOH HOH . H 6 HOH A 167 628 168 HOH HOH . H 6 HOH A 168 629 169 HOH HOH . H 6 HOH A 169 630 170 HOH HOH . H 6 HOH A 170 631 171 HOH HOH . H 6 HOH A 171 632 172 HOH HOH . H 6 HOH A 172 633 173 HOH HOH . H 6 HOH A 173 634 174 HOH HOH . H 6 HOH A 174 635 175 HOH HOH . H 6 HOH A 175 636 176 HOH HOH . H 6 HOH A 176 637 178 HOH HOH . H 6 HOH A 177 638 179 HOH HOH . H 6 HOH A 178 639 180 HOH HOH . H 6 HOH A 179 640 181 HOH HOH . H 6 HOH A 180 641 182 HOH HOH . H 6 HOH A 181 642 184 HOH HOH . H 6 HOH A 182 643 185 HOH HOH . H 6 HOH A 183 644 186 HOH HOH . H 6 HOH A 184 645 187 HOH HOH . H 6 HOH A 185 646 188 HOH HOH . H 6 HOH A 186 647 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 27.321 22.353 33.535 1 73.2 ? PG ATP 457 A 1 HETATM 2 O O1G ATP . . . C 3 28.337 23.227 32.882 1 73.08 ? O1G ATP 457 A 1 HETATM 3 O O2G ATP . . . C 3 26.92 22.782 34.904 1 72.56 ? O2G ATP 457 A 1 HETATM 4 O O3G ATP . . . C 3 26.2 21.926 32.654 1 72.51 ? O3G ATP 457 A 1 HETATM 5 P PB ATP . . . C 3 29.321 20.64 34.848 1 71.02 ? PB ATP 457 A 1 HETATM 6 O O1B ATP . . . C 3 30.109 21.888 35.096 1 70.49 ? O1B ATP 457 A 1 HETATM 7 O O2B ATP . . . C 3 30.044 19.419 34.362 1 68.88 ? O2B ATP 457 A 1 HETATM 8 O O3B ATP . . . C 3 28.116 20.982 33.79 1 70.66 ? O3B ATP 457 A 1 HETATM 9 P PA ATP . . . C 3 28.706 20.192 37.682 1 58.75 ? PA ATP 457 A 1 HETATM 10 O O1A ATP . . . C 3 30.127 19.841 37.976 1 57.45 ? O1A ATP 457 A 1 HETATM 11 O O2A ATP . . . C 3 28.098 21.368 38.345 1 57.77 ? O2A ATP 457 A 1 HETATM 12 O O3A ATP . . . C 3 28.48 20.307 36.112 1 63.61 ? O3A ATP 457 A 1 HETATM 13 O O5' ATP . . . C 3 27.799 18.939 37.972 1 51.88 ? O5' ATP 457 A 1 HETATM 14 C C5' ATP . . . C 3 28.015 17.665 37.343 1 43.67 ? C5' ATP 457 A 1 HETATM 15 C C4' ATP . . . C 3 26.775 17.213 36.608 1 37.46 ? C4' ATP 457 A 1 HETATM 16 O O4' ATP . . . C 3 25.76 17.036 37.611 1 34.62 ? O4' ATP 457 A 1 HETATM 17 C C3' ATP . . . C 3 26.186 18.211 35.627 1 35.54 ? C3' ATP 457 A 1 HETATM 18 O O3' ATP . . . C 3 26.847 18.03 34.377 1 33.77 ? O3' ATP 457 A 1 HETATM 19 C C2' ATP . . . C 3 24.751 17.761 35.606 1 32.35 ? C2' ATP 457 A 1 HETATM 20 O O2' ATP . . . C 3 24.509 16.649 34.759 1 31.53 ? O2' ATP 457 A 1 HETATM 21 C C1' ATP . . . C 3 24.46 17.297 37.056 1 33.27 ? C1' ATP 457 A 1 HETATM 22 N N9 ATP . . . C 3 23.755 18.346 37.867 1 32.78 ? N9 ATP 457 A 1 HETATM 23 C C8 ATP . . . C 3 24.27 19.357 38.662 1 32.48 ? C8 ATP 457 A 1 HETATM 24 N N7 ATP . . . C 3 23.372 20.12 39.243 1 32.38 ? N7 ATP 457 A 1 HETATM 25 C C5 ATP . . . C 3 22.173 19.57 38.797 1 31.94 ? C5 ATP 457 A 1 HETATM 26 C C6 ATP . . . C 3 20.8 19.904 39.034 1 30.72 ? C6 ATP 457 A 1 HETATM 27 N N6 ATP . . . C 3 20.463 20.923 39.817 1 29.76 ? N6 ATP 457 A 1 HETATM 28 N N1 ATP . . . C 3 19.833 19.158 38.438 1 28.71 ? N1 ATP 457 A 1 HETATM 29 C C2 ATP . . . C 3 20.175 18.132 37.643 1 30.35 ? C2 ATP 457 A 1 HETATM 30 N N3 ATP . . . C 3 21.42 17.706 37.33 1 32.09 ? N3 ATP 457 A 1 HETATM 31 C C4 ATP . . . C 3 22.391 18.488 37.956 1 32.75 ? C4 ATP 457 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #