data_1KPF # _model_server_result.job_id Q5QptQxcU1DiOVyPiFu2Pw _model_server_result.datetime_utc '2024-10-20 22:32:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1KPF # _exptl.entry_id 1KPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KPF _cell.length_a 40.15 _cell.length_b 40.15 _cell.length_c 143.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 19 n n P O2P AMP sing 20 n n P O3P AMP sing 21 n n P O5' AMP sing 22 n n O2P HOP2 AMP sing 23 n n O3P HOP3 AMP sing 24 n n O5' C5' AMP sing 25 n n C5' C4' AMP sing 26 n n C5' "H5'1" AMP sing 27 n n C5' "H5'2" AMP sing 28 n n C4' O4' AMP sing 29 n n C4' C3' AMP sing 30 n n C4' H4' AMP sing 31 n n O4' C1' AMP sing 32 n n C3' O3' AMP sing 33 n n C3' C2' AMP sing 34 n n C3' H3' AMP sing 35 n n O3' HO3' AMP sing 36 n n C2' O2' AMP sing 37 n n C2' C1' AMP sing 38 n n C2' H2' AMP sing 39 n n O2' HO2' AMP sing 40 n n C1' N9 AMP sing 41 n n C1' H1' AMP sing 42 n n N9 C8 AMP sing 43 n y N9 C4 AMP sing 44 n y C8 N7 AMP doub 45 n y C8 H8 AMP sing 46 n n N7 C5 AMP sing 47 n y C5 C6 AMP sing 48 n y C5 C4 AMP doub 49 n y C6 N6 AMP sing 50 n n C6 N1 AMP doub 51 n y N6 HN61 AMP sing 52 n n N6 HN62 AMP sing 53 n n N1 C2 AMP sing 54 n y C2 N3 AMP doub 55 n y C2 H2 AMP sing 56 n n N3 C4 AMP sing 57 n y # _atom_sites.entry_id 1KPF _atom_sites.fract_transf_matrix[1][1] 0.024907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024907 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 200 200 AMP AMP . C 3 HOH A 1 201 1 HOH HOH . C 3 HOH A 2 202 2 HOH HOH . C 3 HOH A 3 203 3 HOH HOH . C 3 HOH A 4 204 4 HOH HOH . C 3 HOH A 5 205 5 HOH HOH . C 3 HOH A 6 206 6 HOH HOH . C 3 HOH A 7 207 7 HOH HOH . C 3 HOH A 8 208 8 HOH HOH . C 3 HOH A 9 209 9 HOH HOH . C 3 HOH A 10 210 10 HOH HOH . C 3 HOH A 11 211 11 HOH HOH . C 3 HOH A 12 212 12 HOH HOH . C 3 HOH A 13 213 13 HOH HOH . C 3 HOH A 14 214 14 HOH HOH . C 3 HOH A 15 215 15 HOH HOH . C 3 HOH A 16 216 16 HOH HOH . C 3 HOH A 17 217 17 HOH HOH . C 3 HOH A 18 218 18 HOH HOH . C 3 HOH A 19 219 19 HOH HOH . C 3 HOH A 20 220 20 HOH HOH . C 3 HOH A 21 221 21 HOH HOH . C 3 HOH A 22 222 22 HOH HOH . C 3 HOH A 23 223 23 HOH HOH . C 3 HOH A 24 224 24 HOH HOH . C 3 HOH A 25 225 25 HOH HOH . C 3 HOH A 26 226 26 HOH HOH . C 3 HOH A 27 227 27 HOH HOH . C 3 HOH A 28 228 28 HOH HOH . C 3 HOH A 29 229 29 HOH HOH . C 3 HOH A 30 230 30 HOH HOH . C 3 HOH A 31 231 31 HOH HOH . C 3 HOH A 32 232 32 HOH HOH . C 3 HOH A 33 233 33 HOH HOH . C 3 HOH A 34 234 34 HOH HOH . C 3 HOH A 35 235 35 HOH HOH . C 3 HOH A 36 236 36 HOH HOH . C 3 HOH A 37 237 37 HOH HOH . C 3 HOH A 38 238 38 HOH HOH . C 3 HOH A 39 239 39 HOH HOH . C 3 HOH A 40 240 40 HOH HOH . C 3 HOH A 41 241 41 HOH HOH . C 3 HOH A 42 242 42 HOH HOH . C 3 HOH A 43 243 43 HOH HOH . C 3 HOH A 44 244 44 HOH HOH . C 3 HOH A 45 245 45 HOH HOH . C 3 HOH A 46 246 46 HOH HOH . C 3 HOH A 47 247 47 HOH HOH . C 3 HOH A 48 248 48 HOH HOH . C 3 HOH A 49 249 49 HOH HOH . C 3 HOH A 50 250 50 HOH HOH . C 3 HOH A 51 251 51 HOH HOH . C 3 HOH A 52 252 52 HOH HOH . C 3 HOH A 53 253 53 HOH HOH . C 3 HOH A 54 254 54 HOH HOH . C 3 HOH A 55 255 55 HOH HOH . C 3 HOH A 56 256 56 HOH HOH . C 3 HOH A 57 257 57 HOH HOH . C 3 HOH A 58 258 58 HOH HOH . C 3 HOH A 59 259 59 HOH HOH . C 3 HOH A 60 260 60 HOH HOH . C 3 HOH A 61 261 61 HOH HOH . C 3 HOH A 62 262 62 HOH HOH . C 3 HOH A 63 263 63 HOH HOH . C 3 HOH A 64 264 64 HOH HOH . C 3 HOH A 65 265 65 HOH HOH . C 3 HOH A 66 266 66 HOH HOH . C 3 HOH A 67 267 67 HOH HOH . C 3 HOH A 68 268 68 HOH HOH . C 3 HOH A 69 269 69 HOH HOH . C 3 HOH A 70 270 70 HOH HOH . C 3 HOH A 71 271 71 HOH HOH . C 3 HOH A 72 272 72 HOH HOH . C 3 HOH A 73 273 73 HOH HOH . C 3 HOH A 74 274 74 HOH HOH . C 3 HOH A 75 275 75 HOH HOH . C 3 HOH A 76 276 76 HOH HOH . C 3 HOH A 77 277 77 HOH HOH . C 3 HOH A 78 278 78 HOH HOH . C 3 HOH A 79 279 79 HOH HOH . C 3 HOH A 80 280 80 HOH HOH . C 3 HOH A 81 281 81 HOH HOH . C 3 HOH A 82 282 82 HOH HOH . C 3 HOH A 83 283 83 HOH HOH . C 3 HOH A 84 284 84 HOH HOH . C 3 HOH A 85 285 85 HOH HOH . C 3 HOH A 86 286 86 HOH HOH . C 3 HOH A 87 287 87 HOH HOH . C 3 HOH A 88 288 88 HOH HOH . C 3 HOH A 89 289 89 HOH HOH . C 3 HOH A 90 290 90 HOH HOH . C 3 HOH A 91 291 91 HOH HOH . C 3 HOH A 92 292 92 HOH HOH . C 3 HOH A 93 293 93 HOH HOH . C 3 HOH A 94 294 94 HOH HOH . C 3 HOH A 95 295 95 HOH HOH . C 3 HOH A 96 296 96 HOH HOH . C 3 HOH A 97 297 97 HOH HOH . C 3 HOH A 98 298 98 HOH HOH . C 3 HOH A 99 299 99 HOH HOH . C 3 HOH A 100 300 100 HOH HOH . C 3 HOH A 101 301 101 HOH HOH . C 3 HOH A 102 302 102 HOH HOH . C 3 HOH A 103 303 103 HOH HOH . C 3 HOH A 104 304 104 HOH HOH . C 3 HOH A 105 305 105 HOH HOH . C 3 HOH A 106 306 106 HOH HOH . C 3 HOH A 107 307 107 HOH HOH . C 3 HOH A 108 308 108 HOH HOH . C 3 HOH A 109 309 109 HOH HOH . C 3 HOH A 110 310 110 HOH HOH . C 3 HOH A 111 311 111 HOH HOH . C 3 HOH A 112 312 112 HOH HOH . C 3 HOH A 113 313 113 HOH HOH . C 3 HOH A 114 314 114 HOH HOH . C 3 HOH A 115 315 115 HOH HOH . C 3 HOH A 116 316 116 HOH HOH . C 3 HOH A 117 317 117 HOH HOH . C 3 HOH A 118 318 118 HOH HOH . C 3 HOH A 119 319 119 HOH HOH . C 3 HOH A 120 320 120 HOH HOH . C 3 HOH A 121 321 121 HOH HOH . C 3 HOH A 122 322 122 HOH HOH . C 3 HOH A 123 323 123 HOH HOH . C 3 HOH A 124 324 124 HOH HOH . C 3 HOH A 125 325 125 HOH HOH . C 3 HOH A 126 326 126 HOH HOH . C 3 HOH A 127 327 127 HOH HOH . C 3 HOH A 128 328 128 HOH HOH . C 3 HOH A 129 329 129 HOH HOH . C 3 HOH A 130 330 130 HOH HOH . C 3 HOH A 131 331 131 HOH HOH . C 3 HOH A 132 332 132 HOH HOH . C 3 HOH A 133 333 133 HOH HOH . C 3 HOH A 134 334 134 HOH HOH . C 3 HOH A 135 335 135 HOH HOH . C 3 HOH A 136 336 136 HOH HOH . C 3 HOH A 137 337 137 HOH HOH . C 3 HOH A 138 338 138 HOH HOH . C 3 HOH A 139 339 139 HOH HOH . C 3 HOH A 140 340 140 HOH HOH . C 3 HOH A 141 341 141 HOH HOH . C 3 HOH A 142 342 142 HOH HOH . C 3 HOH A 143 343 143 HOH HOH . C 3 HOH A 144 344 144 HOH HOH . C 3 HOH A 145 345 145 HOH HOH . C 3 HOH A 146 346 146 HOH HOH . C 3 HOH A 147 347 147 HOH HOH . C 3 HOH A 148 348 148 HOH HOH . C 3 HOH A 149 349 149 HOH HOH . C 3 HOH A 150 350 150 HOH HOH . C 3 HOH A 151 351 151 HOH HOH . C 3 HOH A 152 352 152 HOH HOH . C 3 HOH A 153 353 153 HOH HOH . C 3 HOH A 154 354 154 HOH HOH . C 3 HOH A 155 355 155 HOH HOH . C 3 HOH A 156 356 156 HOH HOH . C 3 HOH A 157 357 157 HOH HOH . C 3 HOH A 158 358 158 HOH HOH . C 3 HOH A 159 359 159 HOH HOH . C 3 HOH A 160 360 160 HOH HOH . C 3 HOH A 161 361 161 HOH HOH . C 3 HOH A 162 362 162 HOH HOH . C 3 HOH A 163 363 163 HOH HOH . C 3 HOH A 164 364 164 HOH HOH . C 3 HOH A 165 365 165 HOH HOH . C 3 HOH A 166 366 166 HOH HOH . C 3 HOH A 167 367 167 HOH HOH . C 3 HOH A 168 368 168 HOH HOH . C 3 HOH A 169 369 169 HOH HOH . C 3 HOH A 170 370 170 HOH HOH . C 3 HOH A 171 371 171 HOH HOH . C 3 HOH A 172 372 172 HOH HOH . C 3 HOH A 173 373 173 HOH HOH . C 3 HOH A 174 374 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 13.301 8.768 10.591 1 9.66 ? P AMP 200 A 1 HETATM 2 O O1P AMP . . . B 2 14.442 9.045 9.703 1 9.03 ? O1P AMP 200 A 1 HETATM 3 O O2P AMP . . . B 2 13.322 7.388 11.167 1 9.94 ? O2P AMP 200 A 1 HETATM 4 O O3P AMP . . . B 2 11.956 9.176 10.012 1 9.41 ? O3P AMP 200 A 1 HETATM 5 O O5' AMP . . . B 2 13.583 9.776 11.845 1 10.77 ? O5' AMP 200 A 1 HETATM 6 C C5' AMP . . . B 2 12.647 9.819 12.964 1 9.25 ? C5' AMP 200 A 1 HETATM 7 C C4' AMP . . . B 2 11.755 11.053 12.7 1 10.89 ? C4' AMP 200 A 1 HETATM 8 O O4' AMP . . . B 2 10.767 11.165 13.788 1 9.52 ? O4' AMP 200 A 1 HETATM 9 C C3' AMP . . . B 2 12.67 12.461 12.686 1 9.59 ? C3' AMP 200 A 1 HETATM 10 O O3' AMP . . . B 2 12.115 13.292 11.554 1 9.92 ? O3' AMP 200 A 1 HETATM 11 C C2' AMP . . . B 2 12.3 13.048 14.147 1 9.55 ? C2' AMP 200 A 1 HETATM 12 O O2' AMP . . . B 2 12.124 14.448 14.157 1 6.61 ? O2' AMP 200 A 1 HETATM 13 C C1' AMP . . . B 2 10.806 12.458 14.397 1 9.6 ? C1' AMP 200 A 1 HETATM 14 N N9 AMP . . . B 2 10.553 12.285 15.841 1 9.86 ? N9 AMP 200 A 1 HETATM 15 C C8 AMP . . . B 2 11.373 11.659 16.788 1 10.65 ? C8 AMP 200 A 1 HETATM 16 N N7 AMP . . . B 2 10.932 11.642 18.063 1 9.9 ? N7 AMP 200 A 1 HETATM 17 C C5 AMP . . . B 2 9.731 12.338 17.889 1 10.85 ? C5 AMP 200 A 1 HETATM 18 C C6 AMP . . . B 2 8.706 12.606 18.805 1 11.33 ? C6 AMP 200 A 1 HETATM 19 N N6 AMP . . . B 2 8.903 12.311 20.141 1 10.44 ? N6 AMP 200 A 1 HETATM 20 N N1 AMP . . . B 2 7.569 13.166 18.264 1 10.05 ? N1 AMP 200 A 1 HETATM 21 C C2 AMP . . . B 2 7.455 13.481 16.972 1 10.73 ? C2 AMP 200 A 1 HETATM 22 N N3 AMP . . . B 2 8.389 13.299 16.038 1 8.97 ? N3 AMP 200 A 1 HETATM 23 C C4 AMP . . . B 2 9.482 12.721 16.55 1 10.12 ? C4 AMP 200 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #