data_1KQ3 # _model_server_result.job_id HAK5vrfNaNj90HVFFmE1Nw _model_server_result.datetime_utc '2024-11-08 09:11:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2922}' # _entry.id 1KQ3 # _exptl.entry_id 1KQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KQ3 _cell.length_a 105.73 _cell.length_b 105.73 _cell.length_c 135.79 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 105.73 105.73 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 105.73 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 105.73 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 105.73 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 105.73 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 105.73 105.73 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 181 A ASP 169 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A NE2 HIS 264 A HIS 252 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A NE2 HIS 281 A HIS 269 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 B ZN ZN . A ZN 401 1_555 D N TRS . A TRS 2922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc5 B ZN ZN . A ZN 401 1_555 D O2 TRS . A TRS 2922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 B ZN ZN . A ZN 401 1_555 D O1 TRS . A TRS 2922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 1KQ3 _atom_sites.fract_transf_matrix[1][1] 0.009458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN2 . C 3 CL A 1 501 1 CL CL . D 4 TRS A 1 2922 2922 TRS TRS . E 5 HOH A 1 2923 2 HOH HOH . E 5 HOH A 2 2924 3 HOH HOH . E 5 HOH A 3 2925 4 HOH HOH . E 5 HOH A 4 2926 5 HOH HOH . E 5 HOH A 5 2927 6 HOH HOH . E 5 HOH A 6 2928 7 HOH HOH . E 5 HOH A 7 2929 8 HOH HOH . E 5 HOH A 8 2930 9 HOH HOH . E 5 HOH A 9 2931 10 HOH HOH . E 5 HOH A 10 2932 11 HOH HOH . E 5 HOH A 11 2933 12 HOH HOH . E 5 HOH A 12 2934 14 HOH HOH . E 5 HOH A 13 2935 15 HOH HOH . E 5 HOH A 14 2936 16 HOH HOH . E 5 HOH A 15 2937 17 HOH HOH . E 5 HOH A 16 2938 18 HOH HOH . E 5 HOH A 17 2939 19 HOH HOH . E 5 HOH A 18 2940 20 HOH HOH . E 5 HOH A 19 2941 21 HOH HOH . E 5 HOH A 20 2942 22 HOH HOH . E 5 HOH A 21 2943 23 HOH HOH . E 5 HOH A 22 2944 24 HOH HOH . E 5 HOH A 23 2945 25 HOH HOH . E 5 HOH A 24 2946 26 HOH HOH . E 5 HOH A 25 2947 27 HOH HOH . E 5 HOH A 26 2948 28 HOH HOH . E 5 HOH A 27 2949 29 HOH HOH . E 5 HOH A 28 2950 30 HOH HOH . E 5 HOH A 29 2951 31 HOH HOH . E 5 HOH A 30 2952 32 HOH HOH . E 5 HOH A 31 2953 34 HOH HOH . E 5 HOH A 32 2954 36 HOH HOH . E 5 HOH A 33 2955 37 HOH HOH . E 5 HOH A 34 2956 38 HOH HOH . E 5 HOH A 35 2957 39 HOH HOH . E 5 HOH A 36 2958 40 HOH HOH . E 5 HOH A 37 2959 41 HOH HOH . E 5 HOH A 38 2960 42 HOH HOH . E 5 HOH A 39 2961 43 HOH HOH . E 5 HOH A 40 2962 44 HOH HOH . E 5 HOH A 41 2963 45 HOH HOH . E 5 HOH A 42 2964 46 HOH HOH . E 5 HOH A 43 2965 47 HOH HOH . E 5 HOH A 44 2966 48 HOH HOH . E 5 HOH A 45 2967 49 HOH HOH . E 5 HOH A 46 2968 50 HOH HOH . E 5 HOH A 47 2969 51 HOH HOH . E 5 HOH A 48 2970 52 HOH HOH . E 5 HOH A 49 2971 53 HOH HOH . E 5 HOH A 50 2972 54 HOH HOH . E 5 HOH A 51 2973 55 HOH HOH . E 5 HOH A 52 2974 56 HOH HOH . E 5 HOH A 53 2975 57 HOH HOH . E 5 HOH A 54 2976 58 HOH HOH . E 5 HOH A 55 2977 59 HOH HOH . E 5 HOH A 56 2978 60 HOH HOH . E 5 HOH A 57 2979 61 HOH HOH . E 5 HOH A 58 2980 62 HOH HOH . E 5 HOH A 59 2981 63 HOH HOH . E 5 HOH A 60 2982 64 HOH HOH . E 5 HOH A 61 2983 65 HOH HOH . E 5 HOH A 62 2984 66 HOH HOH . E 5 HOH A 63 2985 67 HOH HOH . E 5 HOH A 64 2986 68 HOH HOH . E 5 HOH A 65 2987 69 HOH HOH . E 5 HOH A 66 2988 70 HOH HOH . E 5 HOH A 67 2989 71 HOH HOH . E 5 HOH A 68 2990 72 HOH HOH . E 5 HOH A 69 2991 73 HOH HOH . E 5 HOH A 70 2992 74 HOH HOH . E 5 HOH A 71 2993 75 HOH HOH . E 5 HOH A 72 2994 76 HOH HOH . E 5 HOH A 73 2995 78 HOH HOH . E 5 HOH A 74 2996 79 HOH HOH . E 5 HOH A 75 2997 80 HOH HOH . E 5 HOH A 76 2998 81 HOH HOH . E 5 HOH A 77 2999 82 HOH HOH . E 5 HOH A 78 3000 83 HOH HOH . E 5 HOH A 79 3001 84 HOH HOH . E 5 HOH A 80 3002 85 HOH HOH . E 5 HOH A 81 3003 86 HOH HOH . E 5 HOH A 82 3004 87 HOH HOH . E 5 HOH A 83 3005 88 HOH HOH . E 5 HOH A 84 3006 89 HOH HOH . E 5 HOH A 85 3007 90 HOH HOH . E 5 HOH A 86 3008 91 HOH HOH . E 5 HOH A 87 3009 92 HOH HOH . E 5 HOH A 88 3010 93 HOH HOH . E 5 HOH A 89 3011 94 HOH HOH . E 5 HOH A 90 3012 95 HOH HOH . E 5 HOH A 91 3013 96 HOH HOH . E 5 HOH A 92 3014 97 HOH HOH . E 5 HOH A 93 3015 98 HOH HOH . E 5 HOH A 94 3016 99 HOH HOH . E 5 HOH A 95 3017 100 HOH HOH . E 5 HOH A 96 3018 101 HOH HOH . E 5 HOH A 97 3019 102 HOH HOH . E 5 HOH A 98 3020 103 HOH HOH . E 5 HOH A 99 3021 104 HOH HOH . E 5 HOH A 100 3022 105 HOH HOH . E 5 HOH A 101 3023 106 HOH HOH . E 5 HOH A 102 3024 107 HOH HOH . E 5 HOH A 103 3025 108 HOH HOH . E 5 HOH A 104 3026 109 HOH HOH . E 5 HOH A 105 3027 110 HOH HOH . E 5 HOH A 106 3028 111 HOH HOH . E 5 HOH A 107 3029 112 HOH HOH . E 5 HOH A 108 3030 113 HOH HOH . E 5 HOH A 109 3031 114 HOH HOH . E 5 HOH A 110 3032 115 HOH HOH . E 5 HOH A 111 3033 116 HOH HOH . E 5 HOH A 112 3034 117 HOH HOH . E 5 HOH A 113 3035 118 HOH HOH . E 5 HOH A 114 3036 119 HOH HOH . E 5 HOH A 115 3037 120 HOH HOH . E 5 HOH A 116 3038 121 HOH HOH . E 5 HOH A 117 3039 122 HOH HOH . E 5 HOH A 118 3040 123 HOH HOH . E 5 HOH A 119 3041 124 HOH HOH . E 5 HOH A 120 3042 125 HOH HOH . E 5 HOH A 121 3043 126 HOH HOH . E 5 HOH A 122 3044 127 HOH HOH . E 5 HOH A 123 3045 128 HOH HOH . E 5 HOH A 124 3046 129 HOH HOH . E 5 HOH A 125 3047 130 HOH HOH . E 5 HOH A 126 3048 131 HOH HOH . E 5 HOH A 127 3049 132 HOH HOH . E 5 HOH A 128 3050 133 HOH HOH . E 5 HOH A 129 3051 134 HOH HOH . E 5 HOH A 130 3052 135 HOH HOH . E 5 HOH A 131 3053 136 HOH HOH . E 5 HOH A 132 3054 137 HOH HOH . E 5 HOH A 133 3055 138 HOH HOH . E 5 HOH A 134 3056 139 HOH HOH . E 5 HOH A 135 3057 140 HOH HOH . E 5 HOH A 136 3058 141 HOH HOH . E 5 HOH A 137 3059 142 HOH HOH . E 5 HOH A 138 3060 143 HOH HOH . E 5 HOH A 139 3061 144 HOH HOH . E 5 HOH A 140 3062 145 HOH HOH . E 5 HOH A 141 3063 146 HOH HOH . E 5 HOH A 142 3064 147 HOH HOH . E 5 HOH A 143 3065 148 HOH HOH . E 5 HOH A 144 3066 149 HOH HOH . E 5 HOH A 145 3067 150 HOH HOH . E 5 HOH A 146 3068 151 HOH HOH . E 5 HOH A 147 3069 152 HOH HOH . E 5 HOH A 148 3070 153 HOH HOH . E 5 HOH A 149 3071 154 HOH HOH . E 5 HOH A 150 3072 155 HOH HOH . E 5 HOH A 151 3073 156 HOH HOH . E 5 HOH A 152 3074 157 HOH HOH . E 5 HOH A 153 3075 158 HOH HOH . E 5 HOH A 154 3076 159 HOH HOH . E 5 HOH A 155 3077 160 HOH HOH . E 5 HOH A 156 3078 161 HOH HOH . E 5 HOH A 157 3079 162 HOH HOH . E 5 HOH A 158 3080 163 HOH HOH . E 5 HOH A 159 3081 164 HOH HOH . E 5 HOH A 160 3082 165 HOH HOH . E 5 HOH A 161 3083 166 HOH HOH . E 5 HOH A 162 3084 167 HOH HOH . E 5 HOH A 163 3085 168 HOH HOH . E 5 HOH A 164 3086 169 HOH HOH . E 5 HOH A 165 3087 170 HOH HOH . E 5 HOH A 166 3088 171 HOH HOH . E 5 HOH A 167 3089 172 HOH HOH . E 5 HOH A 168 3090 173 HOH HOH . E 5 HOH A 169 3091 174 HOH HOH . E 5 HOH A 170 3092 175 HOH HOH . E 5 HOH A 171 3093 176 HOH HOH . E 5 HOH A 172 3094 177 HOH HOH . E 5 HOH A 173 3095 178 HOH HOH . E 5 HOH A 174 3096 179 HOH HOH . E 5 HOH A 175 3097 180 HOH HOH . E 5 HOH A 176 3098 181 HOH HOH . E 5 HOH A 177 3099 182 HOH HOH . E 5 HOH A 178 3100 183 HOH HOH . E 5 HOH A 179 3101 184 HOH HOH . E 5 HOH A 180 3102 185 HOH HOH . E 5 HOH A 181 3103 186 HOH HOH . E 5 HOH A 182 3104 187 HOH HOH . E 5 HOH A 183 3105 188 HOH HOH . E 5 HOH A 184 3106 189 HOH HOH . E 5 HOH A 185 3107 190 HOH HOH . E 5 HOH A 186 3108 191 HOH HOH . E 5 HOH A 187 3109 192 HOH HOH . E 5 HOH A 188 3110 193 HOH HOH . E 5 HOH A 189 3111 194 HOH HOH . E 5 HOH A 190 3112 195 HOH HOH . E 5 HOH A 191 3113 196 HOH HOH . E 5 HOH A 192 3114 197 HOH HOH . E 5 HOH A 193 3115 198 HOH HOH . E 5 HOH A 194 3116 199 HOH HOH . E 5 HOH A 195 3117 200 HOH HOH . E 5 HOH A 196 3118 201 HOH HOH . E 5 HOH A 197 3119 202 HOH HOH . E 5 HOH A 198 3120 203 HOH HOH . E 5 HOH A 199 3121 204 HOH HOH . E 5 HOH A 200 3122 205 HOH HOH . E 5 HOH A 201 3123 206 HOH HOH . E 5 HOH A 202 3124 207 HOH HOH . E 5 HOH A 203 3125 208 HOH HOH . E 5 HOH A 204 3126 209 HOH HOH . E 5 HOH A 205 3127 210 HOH HOH . E 5 HOH A 206 3128 211 HOH HOH . E 5 HOH A 207 3129 212 HOH HOH . E 5 HOH A 208 3130 213 HOH HOH . E 5 HOH A 209 3131 214 HOH HOH . E 5 HOH A 210 3132 215 HOH HOH . E 5 HOH A 211 3133 216 HOH HOH . E 5 HOH A 212 3134 217 HOH HOH . E 5 HOH A 213 3135 218 HOH HOH . E 5 HOH A 214 3136 219 HOH HOH . E 5 HOH A 215 3137 220 HOH HOH . E 5 HOH A 216 3138 221 HOH HOH . E 5 HOH A 217 3139 222 HOH HOH . E 5 HOH A 218 3140 223 HOH HOH . E 5 HOH A 219 3141 224 HOH HOH . E 5 HOH A 220 3142 225 HOH HOH . E 5 HOH A 221 3143 226 HOH HOH . E 5 HOH A 222 3144 227 HOH HOH . E 5 HOH A 223 3145 228 HOH HOH . E 5 HOH A 224 3146 229 HOH HOH . E 5 HOH A 225 3147 230 HOH HOH . E 5 HOH A 226 3148 231 HOH HOH . E 5 HOH A 227 3149 232 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 34.77 20.466 14.459 1 14.36 ? C TRS 2922 A 1 HETATM 2 C C1 TRS . . . D 4 33.54 21.291 15.068 1 14.27 ? C1 TRS 2922 A 1 HETATM 3 C C2 TRS . . . D 4 35.343 21.39 13.323 1 13.88 ? C2 TRS 2922 A 1 HETATM 4 C C3 TRS . . . D 4 34.279 19.183 13.792 1 16.3 ? C3 TRS 2922 A 1 HETATM 5 N N TRS . . . D 4 35.694 20.243 15.531 1 13.51 ? N TRS 2922 A 1 HETATM 6 O O1 TRS . . . D 4 34.152 22.11 16.124 1 15.21 ? O1 TRS 2922 A 1 HETATM 7 O O2 TRS . . . D 4 35.882 22.605 13.96 1 12.49 ? O2 TRS 2922 A 1 HETATM 8 O O3 TRS . . . D 4 33.674 18.237 14.75 1 18.72 ? O3 TRS 2922 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 8 #