data_1KQM # _model_server_result.job_id A2ki34ZpDPIsiDDPVJQRSw _model_server_result.datetime_utc '2024-11-23 02:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 1KQM # _exptl.entry_id 1KQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.64 _cell.angle_beta 82.39 _cell.angle_gamma 87.43 _cell.entry_id 1KQM _cell.length_a 52.396 _cell.length_b 58.642 _cell.length_c 148.873 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 237 A ASN 237 1_555 E O2A ANP . A ANP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? covale ? covale2 A OG SER 240 A SER 240 1_555 E O2G ANP . A ANP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A OG1 THR 183 A THR 183 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 A OG SER 241 A SER 241 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 D MG MG . A MG 903 1_555 E O3G ANP . A ANP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 D MG MG . A MG 903 1_555 E O1A ANP . A ANP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc5 D MG MG . A MG 903 1_555 E O2B ANP . A ANP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc6 D MG MG . A MG 903 1_555 H O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc7 B OD1 ASP 28 B ASP 28 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc8 B OD2 ASP 30 B ASP 30 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? metalc ? metalc9 B OD2 ASP 32 B ASP 32 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc10 B OD1 ASP 32 B ASP 32 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc11 B O PHE 34 B PHE 34 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc12 B OD2 ASP 39 B ASP 39 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc13 F MG MG . B MG 502 1_555 I O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc14 C OD1 ASP 19 C ASP 19 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc15 C O ASP 19 C ASP 19 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc16 C OD2 ASP 22 C ASP 22 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc17 C O GLY 23 C GLY 23 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc18 C N ASP 25 C ASP 25 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.318 ? metalc ? metalc19 C OD1 ASP 25 C ASP 25 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc20 C O ALA 27 C ALA 27 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KQM _atom_sites.fract_transf_matrix[1][1] 0.019085 _atom_sites.fract_transf_matrix[1][2] -0.000857 _atom_sites.fract_transf_matrix[1][3] -0.002453 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01707 _atom_sites.fract_transf_matrix[2][3] -0.002428 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 903 903 MG MG . E 5 ANP A 1 999 999 ANP ANP . F 4 MG B 1 502 502 MG MG . G 6 CA C 1 501 501 CA CA . H 7 HOH A 1 1000 2 HOH HOH . H 7 HOH A 2 1001 3 HOH HOH . H 7 HOH A 3 1002 4 HOH HOH . H 7 HOH A 4 1003 6 HOH HOH . H 7 HOH A 5 1004 7 HOH HOH . I 7 HOH B 1 503 1 HOH HOH . J 7 HOH C 1 502 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.848 _atom_site.Cartn_y -10.177 _atom_site.Cartn_z 29.365 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 903 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #