data_1KQU # _model_server_result.job_id PqtEKWVB0kfMt65aLjbM7A _model_server_result.datetime_utc '2024-12-04 02:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 1KQU # _exptl.entry_id 1KQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-PHENYL-4(R)-(7-PHENYL-HEPTANOYLAMINO)-HEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KQU _cell.length_a 76.55 _cell.length_b 76.55 _cell.length_c 93.46 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 117 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 28 A CYS 28 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 A SG CYS 43 A CYS 43 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 49 A CYS 49 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 50 A CYS 50 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 59 A CYS 59 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 77 A CYS 77 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A O PHE 23 A PHE 23 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc2 A O GLY 25 A GLY 25 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc3 A O HIS 27 A HIS 27 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 A O GLY 29 A GLY 29 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc5 A O GLY 31 A GLY 31 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc6 A OD1 ASP 48 A ASP 48 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc7 A OD2 ASP 48 A ASP 48 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc8 A O TYR 112 A TYR 112 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 A OD1 ASN 114 A ASN 114 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc10 E O HOH . A HOH 225 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc11 E O HOH . A HOH 232 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc12 B CA CA . A CA 301 1_555 D O1 BR4 . A BR4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc13 B CA CA . A CA 301 1_555 D O2 BR4 . A BR4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? # _chem_comp.formula 'C25 H33 N O3' _chem_comp.formula_weight 395.534 _chem_comp.id BR4 _chem_comp.mon_nstd_flag . _chem_comp.name '6-PHENYL-4(R)-(7-PHENYL-HEPTANOYLAMINO)-HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 BR4 sing 70 n n C9 C10 BR4 sing 71 n n C9 H91 BR4 sing 72 n n C9 H92 BR4 sing 73 n n C8 C7 BR4 sing 74 n n C8 H81 BR4 sing 75 n n C8 H82 BR4 sing 76 n n C7 C6 BR4 sing 77 n n C7 H71 BR4 sing 78 n n C7 H72 BR4 sing 79 n n C6 C1 BR4 doub 80 n y C6 C5 BR4 sing 81 n y C1 C2 BR4 sing 82 n y C1 H11 BR4 sing 83 n n C5 C4 BR4 doub 84 n y C5 H51 BR4 sing 85 n n C2 C3 BR4 doub 86 n y C2 H21 BR4 sing 87 n n C4 C3 BR4 sing 88 n y C4 H41 BR4 sing 89 n n C3 H31 BR4 sing 90 n n C13 O1 BR4 doub 91 n n C13 C12 BR4 sing 92 n n C13 N1 BR4 sing 93 n n C12 C11 BR4 sing 94 n n C12 H121 BR4 sing 95 n n C12 H122 BR4 sing 96 n n C11 C10 BR4 sing 97 n n C11 H111 BR4 sing 98 n n C11 H112 BR4 sing 99 n n C10 H101 BR4 sing 100 n n C10 H102 BR4 sing 101 n n N1 C14 BR4 sing 102 n n N1 HN11 BR4 sing 103 n n C23 C14 BR4 sing 104 n n C23 C24 BR4 sing 105 n n C23 H231 BR4 sing 106 n n C23 H232 BR4 sing 107 n n C14 C15 BR4 sing 108 n n C14 H141 BR4 sing 109 n n C15 C16 BR4 sing 110 n n C15 H151 BR4 sing 111 n n C15 H152 BR4 sing 112 n n C16 C17 BR4 sing 113 n n C16 H161 BR4 sing 114 n n C16 H162 BR4 sing 115 n n C17 C18 BR4 doub 116 n y C17 C22 BR4 sing 117 n y C18 C19 BR4 sing 118 n y C18 H181 BR4 sing 119 n n C22 C21 BR4 doub 120 n y C22 H221 BR4 sing 121 n n C19 C20 BR4 doub 122 n y C19 H191 BR4 sing 123 n n C21 C20 BR4 sing 124 n y C21 H211 BR4 sing 125 n n C20 H201 BR4 sing 126 n n C24 C25 BR4 sing 127 n n C24 H241 BR4 sing 128 n n C24 H242 BR4 sing 129 n n C25 O2 BR4 doub 130 n n C25 OT3 BR4 sing 131 n n OT3 HO31 BR4 sing 132 n n # _atom_sites.entry_id 1KQU _atom_sites.fract_transf_matrix[1][1] 0.013063 _atom_sites.fract_transf_matrix[1][2] 0.007542 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 301 CA CA . C 2 CA A 1 302 302 CA CA . D 3 BR4 A 1 501 501 BR4 BR4 . E 4 HOH A 1 201 201 HOH HOH . E 4 HOH A 2 202 202 HOH HOH . E 4 HOH A 3 203 203 HOH HOH . E 4 HOH A 4 204 204 HOH HOH . E 4 HOH A 5 205 205 HOH HOH . E 4 HOH A 6 206 206 HOH HOH . E 4 HOH A 7 207 207 HOH HOH . E 4 HOH A 8 208 208 HOH HOH . E 4 HOH A 9 209 209 HOH HOH . E 4 HOH A 10 210 210 HOH HOH . E 4 HOH A 11 211 211 HOH HOH . E 4 HOH A 12 212 212 HOH HOH . E 4 HOH A 13 213 213 HOH HOH . E 4 HOH A 14 214 214 HOH HOH . E 4 HOH A 15 215 215 HOH HOH . E 4 HOH A 16 216 216 HOH HOH . E 4 HOH A 17 217 217 HOH HOH . E 4 HOH A 18 218 218 HOH HOH . E 4 HOH A 19 219 219 HOH HOH . E 4 HOH A 20 220 220 HOH HOH . E 4 HOH A 21 221 221 HOH HOH . E 4 HOH A 22 222 222 HOH HOH . E 4 HOH A 23 223 223 HOH HOH . E 4 HOH A 24 224 224 HOH HOH . E 4 HOH A 25 225 225 HOH HOH . E 4 HOH A 26 226 226 HOH HOH . E 4 HOH A 27 227 227 HOH HOH . E 4 HOH A 28 228 228 HOH HOH . E 4 HOH A 29 229 229 HOH HOH . E 4 HOH A 30 230 230 HOH HOH . E 4 HOH A 31 231 231 HOH HOH . E 4 HOH A 32 232 232 HOH HOH . E 4 HOH A 33 233 233 HOH HOH . E 4 HOH A 34 234 234 HOH HOH . E 4 HOH A 35 235 235 HOH HOH . E 4 HOH A 36 236 236 HOH HOH . E 4 HOH A 37 237 237 HOH HOH . E 4 HOH A 38 238 238 HOH HOH . E 4 HOH A 39 239 239 HOH HOH . E 4 HOH A 40 240 240 HOH HOH . E 4 HOH A 41 241 241 HOH HOH . E 4 HOH A 42 242 242 HOH HOH . E 4 HOH A 43 243 243 HOH HOH . E 4 HOH A 44 244 244 HOH HOH . E 4 HOH A 45 245 245 HOH HOH . E 4 HOH A 46 246 246 HOH HOH . E 4 HOH A 47 247 247 HOH HOH . E 4 HOH A 48 248 248 HOH HOH . E 4 HOH A 49 249 249 HOH HOH . E 4 HOH A 50 250 250 HOH HOH . E 4 HOH A 51 251 251 HOH HOH . E 4 HOH A 52 252 252 HOH HOH . E 4 HOH A 53 253 253 HOH HOH . E 4 HOH A 54 254 254 HOH HOH . E 4 HOH A 55 255 255 HOH HOH . E 4 HOH A 56 256 256 HOH HOH . E 4 HOH A 57 257 257 HOH HOH . E 4 HOH A 58 258 258 HOH HOH . E 4 HOH A 59 259 259 HOH HOH . E 4 HOH A 60 260 260 HOH HOH . E 4 HOH A 61 261 261 HOH HOH . E 4 HOH A 62 262 262 HOH HOH . E 4 HOH A 63 263 263 HOH HOH . E 4 HOH A 64 264 264 HOH HOH . E 4 HOH A 65 265 265 HOH HOH . E 4 HOH A 66 266 266 HOH HOH . E 4 HOH A 67 267 267 HOH HOH . E 4 HOH A 68 268 268 HOH HOH . E 4 HOH A 69 269 269 HOH HOH . E 4 HOH A 70 270 270 HOH HOH . E 4 HOH A 71 271 271 HOH HOH . E 4 HOH A 72 272 272 HOH HOH . E 4 HOH A 73 273 273 HOH HOH . E 4 HOH A 74 274 274 HOH HOH . E 4 HOH A 75 275 275 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 BR4 . . . D 3 56.675 33.308 46.244 1 20.1 ? C9 BR4 501 A 1 HETATM 2 C C8 BR4 . . . D 3 56.925 32.716 47.606 1 22.4 ? C8 BR4 501 A 1 HETATM 3 C C7 BR4 . . . D 3 55.756 31.864 48.065 1 24.57 ? C7 BR4 501 A 1 HETATM 4 C C6 BR4 . . . D 3 54.604 32.653 48.63 1 27.13 ? C6 BR4 501 A 1 HETATM 5 C C1 BR4 . . . D 3 54.579 32.997 49.979 1 26.35 ? C1 BR4 501 A 1 HETATM 6 C C5 BR4 . . . D 3 53.534 33.033 47.823 1 26.79 ? C5 BR4 501 A 1 HETATM 7 C C2 BR4 . . . D 3 53.504 33.703 50.517 1 28.25 ? C2 BR4 501 A 1 HETATM 8 C C4 BR4 . . . D 3 52.453 33.741 48.353 1 26.98 ? C4 BR4 501 A 1 HETATM 9 C C3 BR4 . . . D 3 52.446 34.073 49.698 1 28.16 ? C3 BR4 501 A 1 HETATM 10 C C13 BR4 . . . D 3 58.681 36.961 44.972 1 17.85 ? C13 BR4 501 A 1 HETATM 11 O O1 BR4 . . . D 3 59.545 37.032 45.845 1 18.11 ? O1 BR4 501 A 1 HETATM 12 C C12 BR4 . . . D 3 58.637 35.773 44.046 1 17.44 ? C12 BR4 501 A 1 HETATM 13 C C11 BR4 . . . D 3 57.571 34.778 44.441 1 20.6 ? C11 BR4 501 A 1 HETATM 14 C C10 BR4 . . . D 3 57.826 34.192 45.822 1 21.08 ? C10 BR4 501 A 1 HETATM 15 N N1 BR4 . . . D 3 57.927 37.994 44.606 1 17.23 ? N1 BR4 501 A 1 HETATM 16 C C23 BR4 . . . D 3 58.149 40.444 44.888 1 17.17 ? C23 BR4 501 A 1 HETATM 17 C C14 BR4 . . . D 3 57.663 39.132 45.508 1 17.59 ? C14 BR4 501 A 1 HETATM 18 C C15 BR4 . . . D 3 56.167 39.266 45.779 1 17.02 ? C15 BR4 501 A 1 HETATM 19 C C16 BR4 . . . D 3 55.538 38.046 46.427 1 18.38 ? C16 BR4 501 A 1 HETATM 20 C C17 BR4 . . . D 3 55.841 37.909 47.89 1 20.28 ? C17 BR4 501 A 1 HETATM 21 C C18 BR4 . . . D 3 56.086 39.034 48.674 1 20.31 ? C18 BR4 501 A 1 HETATM 22 C C22 BR4 . . . D 3 55.835 36.659 48.496 1 18.46 ? C22 BR4 501 A 1 HETATM 23 C C19 BR4 . . . D 3 56.314 38.912 50.038 1 23.03 ? C19 BR4 501 A 1 HETATM 24 C C21 BR4 . . . D 3 56.062 36.528 49.863 1 19.4 ? C21 BR4 501 A 1 HETATM 25 C C20 BR4 . . . D 3 56.3 37.655 50.634 1 19.94 ? C20 BR4 501 A 1 HETATM 26 C C24 BR4 . . . D 3 58.26 41.598 45.876 1 18.6 ? C24 BR4 501 A 1 HETATM 27 C C25 BR4 . . . D 3 59.445 41.439 46.827 1 20.12 ? C25 BR4 501 A 1 HETATM 28 O O2 BR4 . . . D 3 60.419 40.76 46.459 1 21.91 ? O2 BR4 501 A 1 HETATM 29 O OT3 BR4 . . . D 3 59.419 41.997 47.942 1 22.12 ? OT3 BR4 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #