data_1KQW # _model_server_result.job_id 4BzWVhNrt_3ZAvXzPvWECA _model_server_result.datetime_utc '2024-10-24 04:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":135}' # _entry.id 1KQW # _exptl.entry_id 1KQW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KQW _cell.length_a 89.018 _cell.length_b 89.018 _cell.length_c 38.271 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 277 n n C1 C6 RTL sing 278 n n C1 C16 RTL sing 279 n n C1 C17 RTL sing 280 n n C2 C3 RTL sing 281 n n C2 H21 RTL sing 282 n n C2 H22 RTL sing 283 n n C3 C4 RTL sing 284 n n C3 H31 RTL sing 285 n n C3 H32 RTL sing 286 n n C4 C5 RTL sing 287 n n C4 H41 RTL sing 288 n n C4 H42 RTL sing 289 n n C5 C6 RTL doub 290 n n C5 C18 RTL sing 291 n n C6 C7 RTL sing 292 n n C7 C8 RTL doub 293 e n C7 H7 RTL sing 294 n n C8 C9 RTL sing 295 n n C8 H8 RTL sing 296 n n C9 C10 RTL doub 297 e n C9 C19 RTL sing 298 n n C10 C11 RTL sing 299 n n C10 H10 RTL sing 300 n n C11 C12 RTL doub 301 e n C11 H11 RTL sing 302 n n C12 C13 RTL sing 303 n n C12 H12 RTL sing 304 n n C13 C14 RTL doub 305 e n C13 C20 RTL sing 306 n n C14 C15 RTL sing 307 n n C14 H14 RTL sing 308 n n C15 O1 RTL sing 309 n n C15 H151 RTL sing 310 n n C15 H152 RTL sing 311 n n O1 HO1 RTL sing 312 n n C16 H161 RTL sing 313 n n C16 H162 RTL sing 314 n n C16 H163 RTL sing 315 n n C17 H171 RTL sing 316 n n C17 H172 RTL sing 317 n n C17 H173 RTL sing 318 n n C18 H181 RTL sing 319 n n C18 H182 RTL sing 320 n n C18 H183 RTL sing 321 n n C19 H191 RTL sing 322 n n C19 H192 RTL sing 323 n n C19 H193 RTL sing 324 n n C20 H201 RTL sing 325 n n C20 H202 RTL sing 326 n n C20 H203 RTL sing 327 n n # _atom_sites.entry_id 1KQW _atom_sites.fract_transf_matrix[1][1] 0.011234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RTL A 1 135 135 RTL RET . C 3 HOH A 1 136 136 HOH HOH . C 3 HOH A 2 137 137 HOH HOH . C 3 HOH A 3 138 138 HOH HOH . C 3 HOH A 4 139 139 HOH HOH . C 3 HOH A 5 140 140 HOH HOH . C 3 HOH A 6 141 141 HOH HOH . C 3 HOH A 7 142 142 HOH HOH . C 3 HOH A 8 143 143 HOH HOH . C 3 HOH A 9 144 144 HOH HOH . C 3 HOH A 10 145 145 HOH HOH . C 3 HOH A 11 146 146 HOH HOH . C 3 HOH A 12 147 147 HOH HOH . C 3 HOH A 13 148 148 HOH HOH . C 3 HOH A 14 149 149 HOH HOH . C 3 HOH A 15 150 150 HOH HOH . C 3 HOH A 16 151 151 HOH HOH . C 3 HOH A 17 152 152 HOH HOH . C 3 HOH A 18 153 153 HOH HOH . C 3 HOH A 19 154 154 HOH HOH . C 3 HOH A 20 155 155 HOH HOH . C 3 HOH A 21 156 156 HOH HOH . C 3 HOH A 22 157 157 HOH HOH . C 3 HOH A 23 158 158 HOH HOH . C 3 HOH A 24 159 159 HOH HOH . C 3 HOH A 25 160 160 HOH HOH . C 3 HOH A 26 161 161 HOH HOH . C 3 HOH A 27 162 162 HOH HOH . C 3 HOH A 28 163 163 HOH HOH . C 3 HOH A 29 164 164 HOH HOH . C 3 HOH A 30 165 165 HOH HOH . C 3 HOH A 31 166 166 HOH HOH . C 3 HOH A 32 167 167 HOH HOH . C 3 HOH A 33 168 168 HOH HOH . C 3 HOH A 34 169 169 HOH HOH . C 3 HOH A 35 170 170 HOH HOH . C 3 HOH A 36 171 171 HOH HOH . C 3 HOH A 37 172 172 HOH HOH . C 3 HOH A 38 173 173 HOH HOH . C 3 HOH A 39 174 174 HOH HOH . C 3 HOH A 40 175 175 HOH HOH . C 3 HOH A 41 176 176 HOH HOH . C 3 HOH A 42 177 177 HOH HOH . C 3 HOH A 43 178 178 HOH HOH . C 3 HOH A 44 179 179 HOH HOH . C 3 HOH A 45 180 180 HOH HOH . C 3 HOH A 46 181 181 HOH HOH . C 3 HOH A 47 182 182 HOH HOH . C 3 HOH A 48 183 183 HOH HOH . C 3 HOH A 49 184 184 HOH HOH . C 3 HOH A 50 185 185 HOH HOH . C 3 HOH A 51 186 186 HOH HOH . C 3 HOH A 52 187 187 HOH HOH . C 3 HOH A 53 188 188 HOH HOH . C 3 HOH A 54 189 189 HOH HOH . C 3 HOH A 55 190 190 HOH HOH . C 3 HOH A 56 191 191 HOH HOH . C 3 HOH A 57 192 192 HOH HOH . C 3 HOH A 58 193 193 HOH HOH . C 3 HOH A 59 194 194 HOH HOH . C 3 HOH A 60 195 195 HOH HOH . C 3 HOH A 61 196 196 HOH HOH . C 3 HOH A 62 197 197 HOH HOH . C 3 HOH A 63 198 198 HOH HOH . C 3 HOH A 64 199 199 HOH HOH . C 3 HOH A 65 200 200 HOH HOH . C 3 HOH A 66 201 201 HOH HOH . C 3 HOH A 67 202 202 HOH HOH . C 3 HOH A 68 203 203 HOH HOH . C 3 HOH A 69 204 204 HOH HOH . C 3 HOH A 70 205 205 HOH HOH . C 3 HOH A 71 206 206 HOH HOH . C 3 HOH A 72 207 207 HOH HOH . C 3 HOH A 73 208 208 HOH HOH . C 3 HOH A 74 209 209 HOH HOH . C 3 HOH A 75 210 210 HOH HOH . C 3 HOH A 76 211 211 HOH HOH . C 3 HOH A 77 212 212 HOH HOH . C 3 HOH A 78 213 213 HOH HOH . C 3 HOH A 79 214 214 HOH HOH . C 3 HOH A 80 215 215 HOH HOH . C 3 HOH A 81 216 216 HOH HOH . C 3 HOH A 82 217 217 HOH HOH . C 3 HOH A 83 218 218 HOH HOH . C 3 HOH A 84 219 219 HOH HOH . C 3 HOH A 85 220 220 HOH HOH . C 3 HOH A 86 221 221 HOH HOH . C 3 HOH A 87 222 222 HOH HOH . C 3 HOH A 88 223 223 HOH HOH . C 3 HOH A 89 224 224 HOH HOH . C 3 HOH A 90 225 225 HOH HOH . C 3 HOH A 91 226 226 HOH HOH . C 3 HOH A 92 227 227 HOH HOH . C 3 HOH A 93 228 228 HOH HOH . C 3 HOH A 94 229 229 HOH HOH . C 3 HOH A 95 230 230 HOH HOH . C 3 HOH A 96 231 231 HOH HOH . C 3 HOH A 97 232 232 HOH HOH . C 3 HOH A 98 233 233 HOH HOH . C 3 HOH A 99 234 234 HOH HOH . C 3 HOH A 100 235 235 HOH HOH . C 3 HOH A 101 236 236 HOH HOH . C 3 HOH A 102 237 237 HOH HOH . C 3 HOH A 103 238 238 HOH HOH . C 3 HOH A 104 239 239 HOH HOH . C 3 HOH A 105 240 240 HOH HOH . C 3 HOH A 106 241 241 HOH HOH . C 3 HOH A 107 242 242 HOH HOH . C 3 HOH A 108 243 243 HOH HOH . C 3 HOH A 109 244 244 HOH HOH . C 3 HOH A 110 245 245 HOH HOH . C 3 HOH A 111 246 246 HOH HOH . C 3 HOH A 112 247 247 HOH HOH . C 3 HOH A 113 248 248 HOH HOH . C 3 HOH A 114 249 249 HOH HOH . C 3 HOH A 115 250 250 HOH HOH . C 3 HOH A 116 251 251 HOH HOH . C 3 HOH A 117 252 252 HOH HOH . C 3 HOH A 118 253 253 HOH HOH . C 3 HOH A 119 254 254 HOH HOH . C 3 HOH A 120 255 255 HOH HOH . C 3 HOH A 121 256 256 HOH HOH . C 3 HOH A 122 257 257 HOH HOH . C 3 HOH A 123 258 258 HOH HOH . C 3 HOH A 124 259 259 HOH HOH . C 3 HOH A 125 260 260 HOH HOH . C 3 HOH A 126 261 261 HOH HOH . C 3 HOH A 127 262 262 HOH HOH . C 3 HOH A 128 263 263 HOH HOH . C 3 HOH A 129 264 264 HOH HOH . C 3 HOH A 130 265 265 HOH HOH . C 3 HOH A 131 266 266 HOH HOH . C 3 HOH A 132 267 267 HOH HOH . C 3 HOH A 133 268 268 HOH HOH . C 3 HOH A 134 269 269 HOH HOH . C 3 HOH A 135 270 270 HOH HOH . C 3 HOH A 136 271 271 HOH HOH . C 3 HOH A 137 272 272 HOH HOH . C 3 HOH A 138 273 273 HOH HOH . C 3 HOH A 139 274 274 HOH HOH . C 3 HOH A 140 275 275 HOH HOH . C 3 HOH A 141 276 276 HOH HOH . C 3 HOH A 142 277 277 HOH HOH . C 3 HOH A 143 278 278 HOH HOH . C 3 HOH A 144 279 279 HOH HOH . C 3 HOH A 145 280 280 HOH HOH . C 3 HOH A 146 281 281 HOH HOH . C 3 HOH A 147 282 282 HOH HOH . C 3 HOH A 148 283 283 HOH HOH . C 3 HOH A 149 284 284 HOH HOH . C 3 HOH A 150 285 285 HOH HOH . C 3 HOH A 151 286 286 HOH HOH . C 3 HOH A 152 287 287 HOH HOH . C 3 HOH A 153 288 288 HOH HOH . C 3 HOH A 154 289 289 HOH HOH . C 3 HOH A 155 290 290 HOH HOH . C 3 HOH A 156 291 291 HOH HOH . C 3 HOH A 157 292 292 HOH HOH . C 3 HOH A 158 293 293 HOH HOH . C 3 HOH A 159 294 294 HOH HOH . C 3 HOH A 160 295 295 HOH HOH . C 3 HOH A 161 296 296 HOH HOH . C 3 HOH A 162 297 297 HOH HOH . C 3 HOH A 163 298 298 HOH HOH . C 3 HOH A 164 299 299 HOH HOH . C 3 HOH A 165 300 300 HOH HOH . C 3 HOH A 166 301 301 HOH HOH . C 3 HOH A 167 302 302 HOH HOH . C 3 HOH A 168 303 303 HOH HOH . C 3 HOH A 169 304 304 HOH HOH . C 3 HOH A 170 305 305 HOH HOH . C 3 HOH A 171 306 306 HOH HOH . C 3 HOH A 172 307 307 HOH HOH . C 3 HOH A 173 308 308 HOH HOH . C 3 HOH A 174 309 309 HOH HOH . C 3 HOH A 175 310 310 HOH HOH . C 3 HOH A 176 311 311 HOH HOH . C 3 HOH A 177 312 312 HOH HOH . C 3 HOH A 178 313 313 HOH HOH . C 3 HOH A 179 314 314 HOH HOH . C 3 HOH A 180 315 315 HOH HOH . C 3 HOH A 181 316 316 HOH HOH . C 3 HOH A 182 317 317 HOH HOH . C 3 HOH A 183 318 318 HOH HOH . C 3 HOH A 184 319 319 HOH HOH . C 3 HOH A 185 320 320 HOH HOH . C 3 HOH A 186 321 321 HOH HOH . C 3 HOH A 187 322 322 HOH HOH . C 3 HOH A 188 323 323 HOH HOH . C 3 HOH A 189 324 324 HOH HOH . C 3 HOH A 190 325 325 HOH HOH . C 3 HOH A 191 326 326 HOH HOH . C 3 HOH A 192 327 327 HOH HOH . C 3 HOH A 193 328 328 HOH HOH . C 3 HOH A 194 329 329 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . B 2 11.805 54.725 6.014 1 25.33 ? C1 RTL 135 A 1 HETATM 2 C C2 RTL . . . B 2 10.597 54.651 6.989 1 27.29 ? C2 RTL 135 A 1 HETATM 3 C C3 RTL . . . B 2 9.263 54.928 6.346 1 29.04 ? C3 RTL 135 A 1 HETATM 4 C C4 RTL . . . B 2 9.235 56.286 5.683 1 29.38 ? C4 RTL 135 A 1 HETATM 5 C C5 RTL . . . B 2 10.47 56.554 4.78 1 28.34 ? C5 RTL 135 A 1 HETATM 6 C C6 RTL . . . B 2 11.666 56 5.063 1 29.03 ? C6 RTL 135 A 1 HETATM 7 C C7 RTL . . . B 2 12.861 56.419 4.337 1 31.85 ? C7 RTL 135 A 1 HETATM 8 C C8 RTL . . . B 2 13.712 55.795 3.529 1 31.96 ? C8 RTL 135 A 1 HETATM 9 C C9 RTL . . . B 2 14.561 56.513 2.572 1 31.89 ? C9 RTL 135 A 1 HETATM 10 C C10 RTL . . . B 2 15.485 55.752 1.96 1 33.82 ? C10 RTL 135 A 1 HETATM 11 C C11 RTL . . . B 2 16.346 56.174 0.861 1 34.23 ? C11 RTL 135 A 1 HETATM 12 C C12 RTL . . . B 2 16.855 55.14 0.157 1 33.24 ? C12 RTL 135 A 1 HETATM 13 C C13 RTL . . . B 2 18.007 55.207 -0.707 1 29.78 ? C13 RTL 135 A 1 HETATM 14 C C14 RTL . . . B 2 18.778 54.109 -0.859 1 32.36 ? C14 RTL 135 A 1 HETATM 15 C C15 RTL . A . B 2 19.93 53.778 -0.029 0.38 32.82 ? C15 RTL 135 A 1 HETATM 16 C C15 RTL . B . B 2 20.181 54.064 -1.276 0.06 31.15 ? C15 RTL 135 A 1 HETATM 17 O O1 RTL . A . B 2 20.838 54.885 -0.043 0.52 37.73 ? O1 RTL 135 A 1 HETATM 18 O O1 RTL . B . B 2 20.508 52.696 -1.556 0.24 27.45 ? O1 RTL 135 A 1 HETATM 19 C C16 RTL . . . B 2 11.823 53.451 5.12 1 29.01 ? C16 RTL 135 A 1 HETATM 20 C C17 RTL . . . B 2 13.084 54.771 6.873 1 26.3 ? C17 RTL 135 A 1 HETATM 21 C C18 RTL . . . B 2 10.327 57.898 4.014 1 28.64 ? C18 RTL 135 A 1 HETATM 22 C C19 RTL . . . B 2 13.966 57.736 1.823 1 45.38 ? C19 RTL 135 A 1 HETATM 23 C C20 RTL . . . B 2 18.427 56.551 -1.307 1 34.04 ? C20 RTL 135 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #