data_1KR3 # _model_server_result.job_id 1AGdwYdEEm3kI8c2TDxryg _model_server_result.datetime_utc '2024-10-19 00:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kr3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 1KR3 # _exptl.entry_id 1KR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.267 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.8 _cell.angle_beta 95.3 _cell.angle_gamma 98 _cell.entry_id 1KR3 _cell.length_a 41.8 _cell.length_b 44.2 _cell.length_c 58.5 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 82 A HIS 99 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 A ND1 HIS 84 A HIS 101 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A NE2 HIS 145 A HIS 162 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc4 A SG CYS 164 A CYS 181 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 D ZN ZN . A ZN 302 1_555 F O19 113 . A 113 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc6 E NA NA . A NA 501 1_555 K O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc7 B O ASN 38 B ASN 55 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc8 B NE2 HIS 82 B HIS 99 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc9 B ND1 HIS 84 B HIS 101 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc10 B OD2 ASP 86 B ASP 103 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc11 B O ASP 86 B ASP 103 1_555 I NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 B NE2 HIS 145 B HIS 162 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc13 B SG CYS 164 B CYS 181 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc14 B NE2 HIS 206 B HIS 223 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc15 G ZN ZN . B ZN 401 1_555 L O HOH . B HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc16 H ZN ZN . B ZN 402 1_555 J O19 113 . B 113 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc17 H ZN ZN . B ZN 402 1_555 L O HOH . B HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'C15 H14 O8' _chem_comp.formula_weight 322.267 _chem_comp.id 113 _chem_comp.mon_nstd_flag . _chem_comp.name '7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 113 doub 1 n y C1 C6 113 sing 2 n y C1 O17 113 sing 3 n n C2 C3 113 sing 4 n y C2 H2 113 sing 5 n n C3 C4 113 doub 6 n y C3 O8 113 sing 7 n y C4 C5 113 sing 8 n y C4 C11 113 sing 9 n y C5 C6 113 doub 10 n y C5 C18 113 sing 11 n n C6 O16 113 sing 12 n n O8 C9 113 sing 13 n y C9 C10 113 doub 14 n y C9 C12 113 sing 15 n n C10 C11 113 sing 16 n y C10 C15 113 sing 17 n n C11 O31 113 doub 18 n n C12 C13 113 sing 19 n n C12 H121 113 sing 20 n n C12 H122 113 sing 21 n n C13 O14 113 sing 22 n n C13 C26 113 sing 23 n n C13 H13 113 sing 24 n n O14 C15 113 sing 25 n n C15 O20 113 sing 26 n n C15 H15 113 sing 27 n n O16 H16 113 sing 28 n n O17 H17 113 sing 29 n n C18 O19 113 sing 30 n n C18 O30 113 doub 31 n n O19 H19 113 sing 32 n n O20 C22 113 sing 33 n n C22 H221 113 sing 34 n n C22 H222 113 sing 35 n n C22 H223 113 sing 36 n n C26 H261 113 sing 37 n n C26 H262 113 sing 38 n n C26 H263 113 sing 39 n n # _atom_sites.entry_id 1KR3 _atom_sites.fract_transf_matrix[1][1] 0.023923 _atom_sites.fract_transf_matrix[1][2] 0.003362 _atom_sites.fract_transf_matrix[1][3] 0.002434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022847 _atom_sites.fract_transf_matrix[2][3] 0.001433 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 1 ZN ZN2 . D 2 ZN A 1 302 2 ZN ZN2 . E 3 NA A 1 501 1 NA NA1 . F 4 113 A 1 602 2 113 SB3 . G 2 ZN B 1 401 1 ZN ZN2 . H 2 ZN B 1 402 2 ZN ZN2 . I 3 NA B 1 502 2 NA NA1 . J 4 113 B 1 601 1 113 SB3 . K 5 HOH A 1 603 6 HOH WAT . K 5 HOH A 2 604 9 HOH WAT . K 5 HOH A 3 605 10 HOH WAT . K 5 HOH A 4 606 14 HOH WAT . K 5 HOH A 5 607 20 HOH WAT . K 5 HOH A 6 608 21 HOH WAT . K 5 HOH A 7 609 22 HOH WAT . K 5 HOH A 8 610 23 HOH WAT . K 5 HOH A 9 611 24 HOH WAT . K 5 HOH A 10 612 25 HOH WAT . K 5 HOH A 11 613 27 HOH WAT . K 5 HOH A 12 614 30 HOH WAT . K 5 HOH A 13 615 31 HOH WAT . K 5 HOH A 14 616 32 HOH WAT . K 5 HOH A 15 617 37 HOH WAT . K 5 HOH A 16 618 38 HOH WAT . K 5 HOH A 17 619 40 HOH WAT . L 5 HOH B 1 602 1 HOH WAT . L 5 HOH B 2 603 2 HOH WAT . L 5 HOH B 3 604 3 HOH WAT . L 5 HOH B 4 605 4 HOH WAT . L 5 HOH B 5 606 5 HOH WAT . L 5 HOH B 6 607 7 HOH WAT . L 5 HOH B 7 608 8 HOH WAT . L 5 HOH B 8 609 11 HOH WAT . L 5 HOH B 9 610 12 HOH WAT . L 5 HOH B 10 611 13 HOH WAT . L 5 HOH B 11 612 15 HOH WAT . L 5 HOH B 12 613 16 HOH WAT . L 5 HOH B 13 614 17 HOH WAT . L 5 HOH B 14 615 18 HOH WAT . L 5 HOH B 15 616 19 HOH WAT . L 5 HOH B 16 617 26 HOH WAT . L 5 HOH B 17 618 28 HOH WAT . L 5 HOH B 18 619 29 HOH WAT . L 5 HOH B 19 620 33 HOH WAT . L 5 HOH B 20 621 34 HOH WAT . L 5 HOH B 21 622 35 HOH WAT . L 5 HOH B 22 623 36 HOH WAT . L 5 HOH B 23 624 39 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 113 . . . J 4 3.618 12.147 -2.049 1 33.65 ? C1 113 601 B 1 HETATM 2 C C2 113 . . . J 4 4.084 12.709 -0.859 1 32.78 ? C2 113 601 B 1 HETATM 3 C C3 113 . . . J 4 3.194 12.916 0.19 1 31.09 ? C3 113 601 B 1 HETATM 4 C C4 113 . . . J 4 1.887 12.368 0.149 1 31.14 ? C4 113 601 B 1 HETATM 5 C C5 113 . . . J 4 1.411 11.791 -1.062 1 32.12 ? C5 113 601 B 1 HETATM 6 C C6 113 . . . J 4 2.316 11.641 -2.152 1 32.39 ? C6 113 601 B 1 HETATM 7 O O8 113 . . . J 4 3.611 13.676 1.259 1 30.71 ? O8 113 601 B 1 HETATM 8 C C9 113 . . . J 4 2.888 13.717 2.433 1 31.98 ? C9 113 601 B 1 HETATM 9 C C10 113 . . . J 4 1.603 13.291 2.51 1 32.27 ? C10 113 601 B 1 HETATM 10 C C11 113 . . . J 4 1.068 12.46 1.377 1 30.94 ? C11 113 601 B 1 HETATM 11 C C12 113 . . . J 4 3.623 14.291 3.62 1 30.94 ? C12 113 601 B 1 HETATM 12 C C13 113 . . . J 4 2.636 15.112 4.462 1 31.51 ? C13 113 601 B 1 HETATM 13 O O14 113 . . . J 4 1.487 14.311 4.767 1 34.37 ? O14 113 601 B 1 HETATM 14 C C15 113 . . . J 4 0.735 13.676 3.71 1 31.52 ? C15 113 601 B 1 HETATM 15 O O16 113 . . . J 4 1.998 11.021 -3.355 1 24.15 ? O16 113 601 B 1 HETATM 16 O O17 113 . . . J 4 4.417 12.08 -3.179 1 37.66 ? O17 113 601 B 1 HETATM 17 C C18 113 . . . J 4 -0.004 11.364 -1.235 1 34.58 ? C18 113 601 B 1 HETATM 18 O O19 113 . . . J 4 -0.203 10.03 -1.304 1 39.12 ? O19 113 601 B 1 HETATM 19 O O20 113 . . . J 4 -0.417 14.444 3.335 1 33.03 ? O20 113 601 B 1 HETATM 20 C C22 113 . . . J 4 -1.5 14.62 4.226 1 24.36 ? C22 113 601 B 1 HETATM 21 C C26 113 . . . J 4 3.237 15.623 5.775 1 31.25 ? C26 113 601 B 1 HETATM 22 O O30 113 . . . J 4 -0.924 12.151 -1.297 1 31.49 ? O30 113 601 B 1 HETATM 23 O O31 113 . . . J 4 -0.003 11.918 1.519 1 32.16 ? O31 113 601 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 23 #