data_1KR5 # _model_server_result.job_id IbiShoNvnmr1escXwqwRCQ _model_server_result.datetime_utc '2024-11-22 20:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kr5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1KR5 # _exptl.entry_id 1KR5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.6 _cell.angle_gamma 90 _cell.entry_id 1KR5 _cell.length_a 48.007 _cell.length_b 53.698 _cell.length_c 49.003 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KR5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1KR5 _atom_sites.fract_transf_matrix[1][1] 0.02083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00998 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 300 300 SAH SAH . C 3 HOH A 1 301 301 HOH WAT . C 3 HOH A 2 302 302 HOH WAT . C 3 HOH A 3 303 303 HOH WAT . C 3 HOH A 4 304 304 HOH WAT . C 3 HOH A 5 305 305 HOH WAT . C 3 HOH A 6 306 306 HOH WAT . C 3 HOH A 7 307 307 HOH WAT . C 3 HOH A 8 308 308 HOH WAT . C 3 HOH A 9 309 309 HOH WAT . C 3 HOH A 10 310 310 HOH WAT . C 3 HOH A 11 311 311 HOH WAT . C 3 HOH A 12 312 312 HOH WAT . C 3 HOH A 13 313 313 HOH WAT . C 3 HOH A 14 314 314 HOH WAT . C 3 HOH A 15 315 315 HOH WAT . C 3 HOH A 16 316 316 HOH WAT . C 3 HOH A 17 317 317 HOH WAT . C 3 HOH A 18 318 318 HOH WAT . C 3 HOH A 19 319 319 HOH WAT . C 3 HOH A 20 320 320 HOH WAT . C 3 HOH A 21 321 321 HOH WAT . C 3 HOH A 22 322 322 HOH WAT . C 3 HOH A 23 323 323 HOH WAT . C 3 HOH A 24 324 324 HOH WAT . C 3 HOH A 25 325 325 HOH WAT . C 3 HOH A 26 326 326 HOH WAT . C 3 HOH A 27 327 327 HOH WAT . C 3 HOH A 28 328 328 HOH WAT . C 3 HOH A 29 329 329 HOH WAT . C 3 HOH A 30 330 330 HOH WAT . C 3 HOH A 31 331 331 HOH WAT . C 3 HOH A 32 332 332 HOH WAT . C 3 HOH A 33 333 333 HOH WAT . C 3 HOH A 34 334 334 HOH WAT . C 3 HOH A 35 335 335 HOH WAT . C 3 HOH A 36 336 336 HOH WAT . C 3 HOH A 37 337 337 HOH WAT . C 3 HOH A 38 338 338 HOH WAT . C 3 HOH A 39 339 339 HOH WAT . C 3 HOH A 40 340 340 HOH WAT . C 3 HOH A 41 341 341 HOH WAT . C 3 HOH A 42 342 342 HOH WAT . C 3 HOH A 43 343 343 HOH WAT . C 3 HOH A 44 344 344 HOH WAT . C 3 HOH A 45 345 345 HOH WAT . C 3 HOH A 46 346 346 HOH WAT . C 3 HOH A 47 347 347 HOH WAT . C 3 HOH A 48 348 348 HOH WAT . C 3 HOH A 49 349 349 HOH WAT . C 3 HOH A 50 350 350 HOH WAT . C 3 HOH A 51 351 351 HOH WAT . C 3 HOH A 52 352 352 HOH WAT . C 3 HOH A 53 353 353 HOH WAT . C 3 HOH A 54 354 354 HOH WAT . C 3 HOH A 55 355 355 HOH WAT . C 3 HOH A 56 356 356 HOH WAT . C 3 HOH A 57 357 357 HOH WAT . C 3 HOH A 58 358 358 HOH WAT . C 3 HOH A 59 359 359 HOH WAT . C 3 HOH A 60 360 360 HOH WAT . C 3 HOH A 61 361 361 HOH WAT . C 3 HOH A 62 362 362 HOH WAT . C 3 HOH A 63 363 363 HOH WAT . C 3 HOH A 64 364 364 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 10.162 -2.796 12.512 1 41.18 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 10.815 -2.59 13.88 1 42.54 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 10.125 -3.216 15.049 1 43.65 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 9.41 -4.546 14.891 1 41.65 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 9.145 -5.234 16.589 1 41.73 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 12.261 -3.221 13.79 1 41.69 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 12.601 -3.82 12.726 1 40.13 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 12.979 -3.107 14.85 1 40.56 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 7.507 -4.806 16.961 1 34.23 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 7.476 -3.529 17.948 1 33.61 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 6.065 -3.363 18.183 1 31.32 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 8.046 -3.793 19.312 1 31.97 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 9.204 -2.989 19.496 1 33.51 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 6.866 -3.441 20.286 1 34.07 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 7.312 -2.851 21.479 1 31.43 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 5.974 -2.579 19.429 1 35.91 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 4.712 -2.453 19.84 1 38.55 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 3.738 -3.372 20.211 1 42.15 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 2.587 -2.878 20.569 1 41.34 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 2.785 -1.482 20.43 1 41.89 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 1.875 -0.37 20.671 1 41.9 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 0.604 -0.529 21.1 1 39.5 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 2.399 0.88 20.434 1 41.54 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 3.694 1.068 19.997 1 40.88 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 4.576 0.04 19.759 1 41.95 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 4.058 -1.193 19.99 1 41.3 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #