data_1KRO # _model_server_result.job_id vnU46OX7Fn3veDYMPtPMWw _model_server_result.datetime_utc '2024-11-26 07:30:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 1KRO # _exptl.entry_id 1KRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KRO _cell.length_a 93.759 _cell.length_b 93.759 _cell.length_c 131.34 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 PHQ . A PHQ 317 1_555 H N DTH . A DTH 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? metalc ? metalc1 A OD1 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc2 A OD2 ASP 57 A ASP 57 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc3 A OD1 ASP 59 A ASP 59 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc4 A O GLN 61 A GLN 61 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 A OD2 ASP 138 A ASP 138 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 A NE2 HIS 142 A HIS 142 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc7 A NE2 HIS 146 A HIS 146 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc8 A OE2 GLU 166 A GLU 166 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc9 A OE1 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc10 A OE2 GLU 177 A GLU 177 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc11 A OE2 GLU 177 A GLU 177 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc12 A O ASN 183 A ASN 183 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc13 A OD1 ASP 185 A ASP 185 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc14 A OD2 ASP 185 A ASP 185 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc15 A O GLU 187 A GLU 187 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc16 A OE1 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc17 A OE2 GLU 190 A GLU 190 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc18 A OE2 GLU 190 A GLU 190 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc19 A O TYR 193 A TYR 193 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc20 A O THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc21 A OG1 THR 194 A THR 194 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc22 A O ILE 197 A ILE 197 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc23 A OD1 ASP 200 A ASP 200 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc24 B CA CA . A CA 401 1_555 I O HOH . A HOH 1320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc25 C CA CA . A CA 402 1_555 I O HOH . A HOH 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc26 C CA CA . A CA 402 1_555 I O HOH . A HOH 1345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc27 D CA CA . A CA 403 1_555 I O HOH . A HOH 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc28 D CA CA . A CA 403 1_555 I O HOH . A HOH 1331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc29 D CA CA . A CA 403 1_555 I O HOH . A HOH 1336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc30 E CA CA . A CA 404 1_555 I O HOH . A HOH 1324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc31 E CA CA . A CA 404 1_555 I O HOH . A HOH 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc32 F ZN ZN . A ZN 405 1_555 H OXT DTH . A DTH 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc33 F ZN ZN . A ZN 405 1_555 H O DTH . A DTH 1317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KRO _atom_sites.fract_transf_matrix[1][1] 0.010666 _atom_sites.fract_transf_matrix[1][2] 0.006158 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 401 CA CA . C 2 CA A 1 402 402 CA CA . D 2 CA A 1 403 403 CA CA . E 2 CA A 1 404 404 CA CA . F 3 ZN A 1 405 405 ZN ZN . G 4 PHQ A 1 317 1 PHQ PHQ . H 5 DTH A 1 1317 1 DTH DTH . I 6 HOH A 1 1318 1 HOH TIP . I 6 HOH A 2 1319 2 HOH TIP . I 6 HOH A 3 1320 3 HOH TIP . I 6 HOH A 4 1321 4 HOH TIP . I 6 HOH A 5 1322 5 HOH TIP . I 6 HOH A 6 1323 6 HOH TIP . I 6 HOH A 7 1324 7 HOH TIP . I 6 HOH A 8 1325 8 HOH TIP . I 6 HOH A 9 1326 9 HOH TIP . I 6 HOH A 10 1327 10 HOH TIP . I 6 HOH A 11 1328 11 HOH TIP . I 6 HOH A 12 1329 12 HOH TIP . I 6 HOH A 13 1330 13 HOH TIP . I 6 HOH A 14 1331 14 HOH TIP . I 6 HOH A 15 1332 15 HOH TIP . I 6 HOH A 16 1333 16 HOH TIP . I 6 HOH A 17 1334 17 HOH TIP . I 6 HOH A 18 1335 18 HOH TIP . I 6 HOH A 19 1336 19 HOH TIP . I 6 HOH A 20 1337 20 HOH TIP . I 6 HOH A 21 1338 21 HOH TIP . I 6 HOH A 22 1339 22 HOH TIP . I 6 HOH A 23 1340 23 HOH TIP . I 6 HOH A 24 1341 24 HOH TIP . I 6 HOH A 25 1342 25 HOH TIP . I 6 HOH A 26 1343 26 HOH TIP . I 6 HOH A 27 1344 27 HOH TIP . I 6 HOH A 28 1345 28 HOH TIP . I 6 HOH A 29 1346 29 HOH TIP . I 6 HOH A 30 1347 30 HOH TIP . I 6 HOH A 31 1348 31 HOH TIP . I 6 HOH A 32 1349 32 HOH TIP . I 6 HOH A 33 1350 33 HOH TIP . I 6 HOH A 34 1351 34 HOH TIP . I 6 HOH A 35 1352 35 HOH TIP . I 6 HOH A 36 1353 36 HOH TIP . I 6 HOH A 37 1354 37 HOH TIP . I 6 HOH A 38 1355 38 HOH TIP . I 6 HOH A 39 1356 39 HOH TIP . I 6 HOH A 40 1357 40 HOH TIP . I 6 HOH A 41 1358 41 HOH TIP . I 6 HOH A 42 1359 42 HOH TIP . I 6 HOH A 43 1360 43 HOH TIP . I 6 HOH A 44 1361 44 HOH TIP . I 6 HOH A 45 1362 45 HOH TIP . I 6 HOH A 46 1363 46 HOH TIP . I 6 HOH A 47 1364 47 HOH TIP . I 6 HOH A 48 1365 48 HOH TIP . I 6 HOH A 49 1366 49 HOH TIP . I 6 HOH A 50 1367 50 HOH TIP . I 6 HOH A 51 1368 51 HOH TIP . I 6 HOH A 52 1369 52 HOH TIP . I 6 HOH A 53 1370 53 HOH TIP . I 6 HOH A 54 1371 54 HOH TIP . I 6 HOH A 55 1372 55 HOH TIP . I 6 HOH A 56 1373 56 HOH TIP . I 6 HOH A 57 1374 57 HOH TIP . I 6 HOH A 58 1375 58 HOH TIP . I 6 HOH A 59 1376 59 HOH TIP . I 6 HOH A 60 1377 60 HOH TIP . I 6 HOH A 61 1378 62 HOH TIP . I 6 HOH A 62 1379 63 HOH TIP . I 6 HOH A 63 1380 64 HOH TIP . I 6 HOH A 64 1381 65 HOH TIP . I 6 HOH A 65 1382 67 HOH TIP . I 6 HOH A 66 1383 68 HOH TIP . I 6 HOH A 67 1384 69 HOH TIP . I 6 HOH A 68 1385 70 HOH TIP . I 6 HOH A 69 1386 71 HOH TIP . I 6 HOH A 70 1387 73 HOH TIP . I 6 HOH A 71 1388 74 HOH TIP . I 6 HOH A 72 1389 75 HOH TIP . I 6 HOH A 73 1390 76 HOH TIP . I 6 HOH A 74 1391 77 HOH TIP . I 6 HOH A 75 1392 78 HOH TIP . I 6 HOH A 76 1393 79 HOH TIP . I 6 HOH A 77 1394 80 HOH TIP . I 6 HOH A 78 1395 81 HOH TIP . I 6 HOH A 79 1396 83 HOH TIP . I 6 HOH A 80 1397 84 HOH TIP . I 6 HOH A 81 1398 85 HOH TIP . I 6 HOH A 82 1399 86 HOH TIP . I 6 HOH A 83 1400 87 HOH TIP . I 6 HOH A 84 1401 88 HOH TIP . I 6 HOH A 85 1402 90 HOH TIP . I 6 HOH A 86 1403 91 HOH TIP . I 6 HOH A 87 1404 92 HOH TIP . I 6 HOH A 88 1405 93 HOH TIP . I 6 HOH A 89 1406 94 HOH TIP . I 6 HOH A 90 1407 95 HOH TIP . I 6 HOH A 91 1408 96 HOH TIP . I 6 HOH A 92 1409 98 HOH TIP . I 6 HOH A 93 1410 100 HOH TIP . I 6 HOH A 94 1411 101 HOH TIP . I 6 HOH A 95 1412 104 HOH TIP . I 6 HOH A 96 1413 107 HOH TIP . I 6 HOH A 97 1414 108 HOH TIP . I 6 HOH A 98 1415 109 HOH TIP . I 6 HOH A 99 1416 110 HOH TIP . I 6 HOH A 100 1417 111 HOH TIP . I 6 HOH A 101 1418 112 HOH TIP . I 6 HOH A 102 1419 113 HOH TIP . I 6 HOH A 103 1420 114 HOH TIP . I 6 HOH A 104 1421 115 HOH TIP . I 6 HOH A 105 1422 116 HOH TIP . I 6 HOH A 106 1423 117 HOH TIP . I 6 HOH A 107 1424 118 HOH TIP . I 6 HOH A 108 1425 119 HOH TIP . I 6 HOH A 109 1426 120 HOH TIP . I 6 HOH A 110 1427 121 HOH TIP . I 6 HOH A 111 1428 123 HOH TIP . I 6 HOH A 112 1429 125 HOH TIP . I 6 HOH A 113 1430 127 HOH TIP . I 6 HOH A 114 1431 129 HOH TIP . I 6 HOH A 115 1432 130 HOH TIP . I 6 HOH A 116 1433 134 HOH TIP . I 6 HOH A 117 1434 135 HOH TIP . I 6 HOH A 118 1435 140 HOH TIP . I 6 HOH A 119 1436 141 HOH TIP . I 6 HOH A 120 1437 143 HOH TIP . I 6 HOH A 121 1438 144 HOH TIP . I 6 HOH A 122 1439 145 HOH TIP . I 6 HOH A 123 1440 146 HOH TIP . I 6 HOH A 124 1441 147 HOH TIP . I 6 HOH A 125 1442 149 HOH TIP . I 6 HOH A 126 1443 150 HOH TIP . I 6 HOH A 127 1444 153 HOH TIP . I 6 HOH A 128 1445 155 HOH TIP . I 6 HOH A 129 1446 156 HOH TIP . I 6 HOH A 130 1447 157 HOH TIP . I 6 HOH A 131 1448 158 HOH TIP . I 6 HOH A 132 1449 159 HOH TIP . I 6 HOH A 133 1450 160 HOH TIP . I 6 HOH A 134 1451 162 HOH TIP . I 6 HOH A 135 1452 163 HOH TIP . I 6 HOH A 136 1453 164 HOH TIP . I 6 HOH A 137 1454 165 HOH TIP . I 6 HOH A 138 1455 167 HOH TIP . I 6 HOH A 139 1456 168 HOH TIP . I 6 HOH A 140 1457 169 HOH TIP . I 6 HOH A 141 1458 170 HOH TIP . I 6 HOH A 142 1459 171 HOH TIP . I 6 HOH A 143 1460 172 HOH TIP . I 6 HOH A 144 1461 173 HOH TIP . I 6 HOH A 145 1462 174 HOH TIP . I 6 HOH A 146 1463 178 HOH TIP . I 6 HOH A 147 1464 179 HOH TIP . I 6 HOH A 148 1465 180 HOH TIP . I 6 HOH A 149 1466 181 HOH TIP . I 6 HOH A 150 1467 182 HOH TIP . I 6 HOH A 151 1468 183 HOH TIP . I 6 HOH A 152 1469 184 HOH TIP . I 6 HOH A 153 1470 193 HOH TIP . I 6 HOH A 154 1471 194 HOH TIP . I 6 HOH A 155 1472 195 HOH TIP . I 6 HOH A 156 1473 197 HOH TIP . I 6 HOH A 157 1474 198 HOH TIP . I 6 HOH A 158 1475 199 HOH TIP . I 6 HOH A 159 1476 201 HOH TIP . I 6 HOH A 160 1477 202 HOH TIP . I 6 HOH A 161 1478 204 HOH TIP . I 6 HOH A 162 1479 205 HOH TIP . I 6 HOH A 163 1480 206 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.531 _atom_site.Cartn_y 45.74 _atom_site.Cartn_z 81.497 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 434 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #