data_1KRV
#
_model_server_result.job_id            CUYq11f1Jzc5AYXmRjlGRw 
_model_server_result.datetime_utc      '2024-12-21 12:15:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1krv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":205}' 
#
_entry.id    1KRV 
#
_exptl.entry_id    1KRV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.249 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-nitrophenyl beta-D-galactopyranoside' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KRV 
_cell.length_a            66.3 
_cell.length_b            183.8 
_cell.length_c            121.5 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
_chem_comp.formula           'C12 H15 N O8' 
_chem_comp.formula_weight    301.249 
_chem_comp.id                147 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '4-nitrophenyl beta-D-galactopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '1-O-[P-NITROPHENYL]-BETA-D-GALACTOPYRANOSE;4-nitrophenyl beta-D-galactoside;4-nitrophenyl D-galactoside;4-nitrophenyl galactoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 147 sing 1 n n 
C1 O5 147 sing 2 n n 
C1 O1 147 sing 3 n n 
C1 H1 147 sing 4 n n 
C2 O2 147 sing 5 n n 
C2 C3 147 sing 6 n n 
C2 H2 147 sing 7 n n 
O2 HO2 147 sing 8 n n 
C3 O3 147 sing 9 n n 
C3 C4 147 sing 10 n n 
C3 H3 147 sing 11 n n 
O3 HO3 147 sing 12 n n 
C4 O4 147 sing 13 n n 
C4 C5 147 sing 14 n n 
C4 H4 147 sing 15 n n 
O4 HO4 147 sing 16 n n 
C5 C6 147 sing 17 n n 
C5 O5 147 sing 18 n n 
C5 H5 147 sing 19 n n 
C6 O6 147 sing 20 n n 
C6 H61 147 sing 21 n n 
C6 H62 147 sing 22 n n 
O6 HO6 147 sing 23 n n 
O1 C1' 147 sing 24 n n 
C1' C2' 147 doub 25 n y 
C1' C6' 147 sing 26 n y 
C2' C3' 147 sing 27 n y 
C2' H2' 147 sing 28 n n 
C3' C4' 147 doub 29 n y 
C3' H3' 147 sing 30 n n 
C4' C5' 147 sing 31 n y 
C4' N1' 147 sing 32 n n 
C5' C6' 147 doub 33 n y 
C5' H5' 147 sing 34 n n 
C6' H6' 147 sing 35 n n 
N1' O2' 147 sing 36 n n 
N1' O3' 147 doub 37 n n 
#
_pdbx_chem_comp_identifier.comp_id            147 
_pdbx_chem_comp_identifier.identifier         1-O-[P-nitrophenyl]-b-D-galactopyranose 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1KRV 
_atom_sites.fract_transf_matrix[1][1]    0.015083 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005441 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00823 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 147 A 1 206 204 147 PNP . 
E 3 COA A 1 207 205 COA COA . 
F 2 147 B 1 204 204 147 PNP . 
G 3 COA B 1 208 205 COA COA . 
H 2 147 C 1 205 204 147 PNP . 
I 3 COA C 1 209 205 COA COA . 
J 4 HOH A 1 2001 2001 HOH HOH . 
J 4 HOH A 2 2004 2004 HOH HOH . 
J 4 HOH A 3 2005 2005 HOH HOH . 
J 4 HOH A 4 2010 2010 HOH HOH . 
J 4 HOH A 5 2012 2012 HOH HOH . 
J 4 HOH A 6 2015 2015 HOH HOH . 
J 4 HOH A 7 2017 2017 HOH HOH . 
J 4 HOH A 8 2021 2021 HOH HOH . 
J 4 HOH A 9 2022 2022 HOH HOH . 
J 4 HOH A 10 2023 2023 HOH HOH . 
J 4 HOH A 11 2031 2031 HOH HOH . 
J 4 HOH A 12 2034 2034 HOH HOH . 
J 4 HOH A 13 2035 2035 HOH HOH . 
J 4 HOH A 14 2036 2036 HOH HOH . 
J 4 HOH A 15 2037 2037 HOH HOH . 
J 4 HOH A 16 2041 2041 HOH HOH . 
J 4 HOH A 17 2044 2044 HOH HOH . 
J 4 HOH A 18 2045 2045 HOH HOH . 
J 4 HOH A 19 2047 2047 HOH HOH . 
J 4 HOH A 20 2048 2048 HOH HOH . 
J 4 HOH A 21 2056 2056 HOH HOH . 
J 4 HOH A 22 2057 2057 HOH HOH . 
J 4 HOH A 23 2058 2058 HOH HOH . 
J 4 HOH A 24 2060 2060 HOH HOH . 
J 4 HOH A 25 2067 2067 HOH HOH . 
K 4 HOH B 1 2003 2003 HOH HOH . 
K 4 HOH B 2 2006 2006 HOH HOH . 
K 4 HOH B 3 2009 2009 HOH HOH . 
K 4 HOH B 4 2011 2011 HOH HOH . 
K 4 HOH B 5 2016 2016 HOH HOH . 
K 4 HOH B 6 2025 2025 HOH HOH . 
K 4 HOH B 7 2030 2030 HOH HOH . 
K 4 HOH B 8 2032 2032 HOH HOH . 
K 4 HOH B 9 2033 2033 HOH HOH . 
K 4 HOH B 10 2039 2039 HOH HOH . 
K 4 HOH B 11 2040 2040 HOH HOH . 
K 4 HOH B 12 2042 2042 HOH HOH . 
K 4 HOH B 13 2043 2043 HOH HOH . 
K 4 HOH B 14 2046 2046 HOH HOH . 
K 4 HOH B 15 2049 2049 HOH HOH . 
K 4 HOH B 16 2051 2051 HOH HOH . 
K 4 HOH B 17 2054 2054 HOH HOH . 
K 4 HOH B 18 2055 2055 HOH HOH . 
K 4 HOH B 19 2059 2059 HOH HOH . 
K 4 HOH B 20 2063 2063 HOH HOH . 
K 4 HOH B 21 2064 2064 HOH HOH . 
K 4 HOH B 22 2066 2066 HOH HOH . 
K 4 HOH B 23 2069 2069 HOH HOH . 
K 4 HOH B 24 2071 2071 HOH HOH . 
L 4 HOH C 1 2002 2002 HOH HOH . 
L 4 HOH C 2 2007 2007 HOH HOH . 
L 4 HOH C 3 2008 2008 HOH HOH . 
L 4 HOH C 4 2013 2013 HOH HOH . 
L 4 HOH C 5 2014 2014 HOH HOH . 
L 4 HOH C 6 2018 2018 HOH HOH . 
L 4 HOH C 7 2019 2019 HOH HOH . 
L 4 HOH C 8 2020 2020 HOH HOH . 
L 4 HOH C 9 2024 2024 HOH HOH . 
L 4 HOH C 10 2026 2026 HOH HOH . 
L 4 HOH C 11 2027 2027 HOH HOH . 
L 4 HOH C 12 2028 2028 HOH HOH . 
L 4 HOH C 13 2029 2029 HOH HOH . 
L 4 HOH C 14 2038 2038 HOH HOH . 
L 4 HOH C 15 2050 2050 HOH HOH . 
L 4 HOH C 16 2053 2053 HOH HOH . 
L 4 HOH C 17 2061 2061 HOH HOH . 
L 4 HOH C 18 2062 2062 HOH HOH . 
L 4 HOH C 19 2065 2065 HOH HOH . 
L 4 HOH C 20 2068 2068 HOH HOH . 
L 4 HOH C 21 2070 2070 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 147 . . . H 2 -21.306 -19.576 11.835 1 47.66 ? C1 147 205 C 1 
HETATM 2 C C2 147 . . . H 2 -22.611 -18.868 12.317 1 46.56 ? C2 147 205 C 1 
HETATM 3 O O2 147 . . . H 2 -23.033 -19.407 13.605 1 46.21 ? O2 147 205 C 1 
HETATM 4 C C3 147 . . . H 2 -23.724 -19.054 11.208 1 46.5 ? C3 147 205 C 1 
HETATM 5 O O3 147 . . . H 2 -24.954 -18.377 11.65 1 45.49 ? O3 147 205 C 1 
HETATM 6 C C4 147 . . . H 2 -23.199 -18.447 9.831 1 46.19 ? C4 147 205 C 1 
HETATM 7 O O4 147 . . . H 2 -22.828 -17.05 9.977 1 47.67 ? O4 147 205 C 1 
HETATM 8 C C5 147 . . . H 2 -21.874 -19.206 9.382 1 46.29 ? C5 147 205 C 1 
HETATM 9 C C6 147 . . . H 2 -21.341 -18.634 8.016 1 45.77 ? C6 147 205 C 1 
HETATM 10 O O6 147 . . . H 2 -20.135 -19.278 7.523 1 45.8 ? O6 147 205 C 1 
HETATM 11 O O5 147 . . . H 2 -20.858 -19.059 10.518 1 45.88 ? O5 147 205 C 1 
HETATM 12 O O1 147 . . . H 2 -20.317 -19.392 12.848 1 51.45 ? O1 147 205 C 1 
HETATM 13 C C1' 147 . . . H 2 -18.916 -19.95 12.805 1 52.38 ? C1' 147 205 C 1 
HETATM 14 C C2' 147 . . . H 2 -17.988 -19.794 11.719 1 51.89 ? C2' 147 205 C 1 
HETATM 15 C C3' 147 . . . H 2 -16.708 -20.389 11.8 1 51.71 ? C3' 147 205 C 1 
HETATM 16 C C4' 147 . . . H 2 -16.344 -21.174 13.017 1 53.08 ? C4' 147 205 C 1 
HETATM 17 C C5' 147 . . . H 2 -17.205 -21.345 14.088 1 52.95 ? C5' 147 205 C 1 
HETATM 18 C C6' 147 . . . H 2 -18.492 -20.752 14.021 1 53.56 ? C6' 147 205 C 1 
HETATM 19 N N1' 147 . . . H 2 -14.941 -21.773 12.965 1 54.39 ? N1' 147 205 C 1 
HETATM 20 O O2' 147 . . . H 2 -14.296 -21.828 13.985 1 55.17 ? O2' 147 205 C 1 
HETATM 21 O O3' 147 . . . H 2 -14.604 -22.344 11.9 1 55.33 ? O3' 147 205 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#