data_1KRV # _model_server_result.job_id FhL7LcXwPEE40Idy1EjcmA _model_server_result.datetime_utc '2024-12-21 11:52:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1krv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":207}' # _entry.id 1KRV # _exptl.entry_id 1KRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KRV _cell.length_a 66.3 _cell.length_b 183.8 _cell.length_c 121.5 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 107 n y N1A C6A COA doub 108 n y C2A N3A COA doub 109 n y C2A H2A COA sing 110 n n N3A C4A COA sing 111 n y C4A C5A COA doub 112 n y C4A N9A COA sing 113 n y C5A C6A COA sing 114 n y C5A N7A COA sing 115 n y C6A N6A COA sing 116 n n N6A H61A COA sing 117 n n N6A H62A COA sing 118 n n N7A C8A COA doub 119 n y C8A N9A COA sing 120 n y C8A H8A COA sing 121 n n N9A C1B COA sing 122 n n C1B C2B COA sing 123 n n C1B O4B COA sing 124 n n C1B H1B COA sing 125 n n C2B O2B COA sing 126 n n C2B C3B COA sing 127 n n C2B H2B COA sing 128 n n O2B HO2A COA sing 129 n n C3B O3B COA sing 130 n n C3B C4B COA sing 131 n n C3B H3B COA sing 132 n n O3B P3B COA sing 133 n n P3B O7A COA doub 134 n n P3B O8A COA sing 135 n n P3B O9A COA sing 136 n n O8A HOA8 COA sing 137 n n O9A HOA9 COA sing 138 n n C4B O4B COA sing 139 n n C4B C5B COA sing 140 n n C4B H4B COA sing 141 n n C5B O5B COA sing 142 n n C5B H51A COA sing 143 n n C5B H52A COA sing 144 n n O5B P1A COA sing 145 n n P1A O1A COA doub 146 n n P1A O2A COA sing 147 n n P1A O3A COA sing 148 n n O2A HOA2 COA sing 149 n n O3A P2A COA sing 150 n n P2A O4A COA doub 151 n n P2A O5A COA sing 152 n n P2A O6A COA sing 153 n n O5A HOA5 COA sing 154 n n O6A CCP COA sing 155 n n CBP CCP COA sing 156 n n CBP CDP COA sing 157 n n CBP CEP COA sing 158 n n CBP CAP COA sing 159 n n CCP H121 COA sing 160 n n CCP H122 COA sing 161 n n CDP H131 COA sing 162 n n CDP H132 COA sing 163 n n CDP H133 COA sing 164 n n CEP H141 COA sing 165 n n CEP H142 COA sing 166 n n CEP H143 COA sing 167 n n CAP OAP COA sing 168 n n CAP C9P COA sing 169 n n CAP H10 COA sing 170 n n OAP HO1 COA sing 171 n n C9P O9P COA doub 172 n n C9P N8P COA sing 173 n n N8P C7P COA sing 174 n n N8P HN8 COA sing 175 n n C7P C6P COA sing 176 n n C7P H71 COA sing 177 n n C7P H72 COA sing 178 n n C6P C5P COA sing 179 n n C6P H61 COA sing 180 n n C6P H62 COA sing 181 n n C5P O5P COA doub 182 n n C5P N4P COA sing 183 n n N4P C3P COA sing 184 n n N4P HN4 COA sing 185 n n C3P C2P COA sing 186 n n C3P H31 COA sing 187 n n C3P H32 COA sing 188 n n C2P S1P COA sing 189 n n C2P H21 COA sing 190 n n C2P H22 COA sing 191 n n S1P HS1 COA sing 192 n n # _atom_sites.entry_id 1KRV _atom_sites.fract_transf_matrix[1][1] 0.015083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 147 A 1 206 204 147 PNP . E 3 COA A 1 207 205 COA COA . F 2 147 B 1 204 204 147 PNP . G 3 COA B 1 208 205 COA COA . H 2 147 C 1 205 204 147 PNP . I 3 COA C 1 209 205 COA COA . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2004 2004 HOH HOH . J 4 HOH A 3 2005 2005 HOH HOH . J 4 HOH A 4 2010 2010 HOH HOH . J 4 HOH A 5 2012 2012 HOH HOH . J 4 HOH A 6 2015 2015 HOH HOH . J 4 HOH A 7 2017 2017 HOH HOH . J 4 HOH A 8 2021 2021 HOH HOH . J 4 HOH A 9 2022 2022 HOH HOH . J 4 HOH A 10 2023 2023 HOH HOH . J 4 HOH A 11 2031 2031 HOH HOH . J 4 HOH A 12 2034 2034 HOH HOH . J 4 HOH A 13 2035 2035 HOH HOH . J 4 HOH A 14 2036 2036 HOH HOH . J 4 HOH A 15 2037 2037 HOH HOH . J 4 HOH A 16 2041 2041 HOH HOH . J 4 HOH A 17 2044 2044 HOH HOH . J 4 HOH A 18 2045 2045 HOH HOH . J 4 HOH A 19 2047 2047 HOH HOH . J 4 HOH A 20 2048 2048 HOH HOH . J 4 HOH A 21 2056 2056 HOH HOH . J 4 HOH A 22 2057 2057 HOH HOH . J 4 HOH A 23 2058 2058 HOH HOH . J 4 HOH A 24 2060 2060 HOH HOH . J 4 HOH A 25 2067 2067 HOH HOH . K 4 HOH B 1 2003 2003 HOH HOH . K 4 HOH B 2 2006 2006 HOH HOH . K 4 HOH B 3 2009 2009 HOH HOH . K 4 HOH B 4 2011 2011 HOH HOH . K 4 HOH B 5 2016 2016 HOH HOH . K 4 HOH B 6 2025 2025 HOH HOH . K 4 HOH B 7 2030 2030 HOH HOH . K 4 HOH B 8 2032 2032 HOH HOH . K 4 HOH B 9 2033 2033 HOH HOH . K 4 HOH B 10 2039 2039 HOH HOH . K 4 HOH B 11 2040 2040 HOH HOH . K 4 HOH B 12 2042 2042 HOH HOH . K 4 HOH B 13 2043 2043 HOH HOH . K 4 HOH B 14 2046 2046 HOH HOH . K 4 HOH B 15 2049 2049 HOH HOH . K 4 HOH B 16 2051 2051 HOH HOH . K 4 HOH B 17 2054 2054 HOH HOH . K 4 HOH B 18 2055 2055 HOH HOH . K 4 HOH B 19 2059 2059 HOH HOH . K 4 HOH B 20 2063 2063 HOH HOH . K 4 HOH B 21 2064 2064 HOH HOH . K 4 HOH B 22 2066 2066 HOH HOH . K 4 HOH B 23 2069 2069 HOH HOH . K 4 HOH B 24 2071 2071 HOH HOH . L 4 HOH C 1 2002 2002 HOH HOH . L 4 HOH C 2 2007 2007 HOH HOH . L 4 HOH C 3 2008 2008 HOH HOH . L 4 HOH C 4 2013 2013 HOH HOH . L 4 HOH C 5 2014 2014 HOH HOH . L 4 HOH C 6 2018 2018 HOH HOH . L 4 HOH C 7 2019 2019 HOH HOH . L 4 HOH C 8 2020 2020 HOH HOH . L 4 HOH C 9 2024 2024 HOH HOH . L 4 HOH C 10 2026 2026 HOH HOH . L 4 HOH C 11 2027 2027 HOH HOH . L 4 HOH C 12 2028 2028 HOH HOH . L 4 HOH C 13 2029 2029 HOH HOH . L 4 HOH C 14 2038 2038 HOH HOH . L 4 HOH C 15 2050 2050 HOH HOH . L 4 HOH C 16 2053 2053 HOH HOH . L 4 HOH C 17 2061 2061 HOH HOH . L 4 HOH C 18 2062 2062 HOH HOH . L 4 HOH C 19 2065 2065 HOH HOH . L 4 HOH C 20 2068 2068 HOH HOH . L 4 HOH C 21 2070 2070 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . E 3 -15.149 -23.233 -17.052 1 30.25 ? N1A COA 207 A 1 HETATM 2 C C2A COA . . . E 3 -14.312 -22.32 -17.612 1 30.36 ? C2A COA 207 A 1 HETATM 3 N N3A COA . . . E 3 -13.068 -22.526 -18.103 1 30.91 ? N3A COA 207 A 1 HETATM 4 C C4A COA . . . E 3 -12.696 -23.847 -17.985 1 33.67 ? C4A COA 207 A 1 HETATM 5 C C5A COA . . . E 3 -13.457 -24.875 -17.435 1 31.74 ? C5A COA 207 A 1 HETATM 6 C C6A COA . . . E 3 -14.746 -24.545 -16.945 1 29.75 ? C6A COA 207 A 1 HETATM 7 N N6A COA . . . E 3 -15.572 -25.429 -16.398 1 27.8 ? N6A COA 207 A 1 HETATM 8 N N7A COA . . . E 3 -12.787 -26.055 -17.475 1 34.64 ? N7A COA 207 A 1 HETATM 9 C C8A COA . . . E 3 -11.628 -25.758 -18.031 1 36.24 ? C8A COA 207 A 1 HETATM 10 N N9A COA . . . E 3 -11.492 -24.446 -18.374 1 37.35 ? N9A COA 207 A 1 HETATM 11 C C1B COA . . . E 3 -10.325 -23.782 -18.999 1 40.36 ? C1B COA 207 A 1 HETATM 12 C C2B COA . . . E 3 -9.023 -24.382 -18.492 1 42.3 ? C2B COA 207 A 1 HETATM 13 O O2B COA . . . E 3 -8.608 -23.82 -17.231 1 40.99 ? O2B COA 207 A 1 HETATM 14 C C3B COA . . . E 3 -8.028 -24.122 -19.581 1 45.51 ? C3B COA 207 A 1 HETATM 15 O O3B COA . . . E 3 -7.305 -22.893 -19.318 1 52.44 ? O3B COA 207 A 1 HETATM 16 P P3B COA . . . E 3 -6.16 -22.337 -20.28 1 58.66 ? P3B COA 207 A 1 HETATM 17 O O7A COA . . . E 3 -5.643 -21.073 -19.697 1 56.97 ? O7A COA 207 A 1 HETATM 18 O O8A COA . . . E 3 -6.705 -22.069 -21.654 1 54.2 ? O8A COA 207 A 1 HETATM 19 O O9A COA . . . E 3 -5.049 -23.326 -20.37 1 56.91 ? O9A COA 207 A 1 HETATM 20 C C4B COA . . . E 3 -8.93 -24.149 -20.84 1 43.09 ? C4B COA 207 A 1 HETATM 21 O O4B COA . . . E 3 -10.292 -23.956 -20.39 1 40.48 ? O4B COA 207 A 1 HETATM 22 C C5B COA . . . E 3 -8.885 -25.441 -21.682 1 43.38 ? C5B COA 207 A 1 HETATM 23 O O5B COA . . . E 3 -9.448 -26.619 -20.989 1 44.99 ? O5B COA 207 A 1 HETATM 24 P P1A COA . . . E 3 -8.583 -28.019 -20.888 1 43.17 ? P1A COA 207 A 1 HETATM 25 O O1A COA . . . E 3 -7.726 -27.982 -19.688 1 42.53 ? O1A COA 207 A 1 HETATM 26 O O2A COA . . . E 3 -7.736 -28.209 -22.1 1 44.23 ? O2A COA 207 A 1 HETATM 27 O O3A COA . . . E 3 -9.686 -29.131 -20.78 1 42.44 ? O3A COA 207 A 1 HETATM 28 P P2A COA . . . E 3 -10.881 -29.738 -21.787 1 43.22 ? P2A COA 207 A 1 HETATM 29 O O4A COA . . . E 3 -10.673 -31.209 -21.989 1 42.62 ? O4A COA 207 A 1 HETATM 30 O O5A COA . . . E 3 -10.797 -29.077 -23.11 1 39.3 ? O5A COA 207 A 1 HETATM 31 O O6A COA . . . E 3 -12.139 -29.313 -20.858 1 43.14 ? O6A COA 207 A 1 HETATM 32 C CBP COA . . . E 3 -13.646 -30.278 -18.911 1 43.25 ? CBP COA 207 A 1 HETATM 33 C CCP COA . . . E 3 -12.271 -30.264 -19.684 1 43.99 ? CCP COA 207 A 1 HETATM 34 C CDP COA . . . E 3 -14.647 -29.311 -19.565 1 41.49 ? CDP COA 207 A 1 HETATM 35 C CEP COA . . . E 3 -14.228 -31.69 -18.985 1 43.2 ? CEP COA 207 A 1 HETATM 36 C CAP COA . . . E 3 -13.41 -29.873 -17.398 1 44.65 ? CAP COA 207 A 1 HETATM 37 O OAP COA . . . E 3 -12.851 -28.583 -17.357 1 42.55 ? OAP COA 207 A 1 HETATM 38 C C9P COA . . . E 3 -14.712 -29.796 -16.466 1 47.91 ? C9P COA 207 A 1 HETATM 39 O O9P COA . . . E 3 -15.045 -28.707 -15.912 1 46.43 ? O9P COA 207 A 1 HETATM 40 N N8P COA . . . E 3 -15.439 -30.874 -16.269 1 50.6 ? N8P COA 207 A 1 HETATM 41 C C7P COA . . . E 3 -16.653 -30.913 -15.41 1 51.49 ? C7P COA 207 A 1 HETATM 42 C C6P COA . . . E 3 -16.325 -31.79 -14.186 1 54.36 ? C6P COA 207 A 1 HETATM 43 C C5P COA . . . E 3 -17.496 -31.953 -13.223 1 55.46 ? C5P COA 207 A 1 HETATM 44 O O5P COA . . . E 3 -18.311 -31.04 -13.008 1 56.38 ? O5P COA 207 A 1 HETATM 45 N N4P COA . . . E 3 -17.553 -33.149 -12.656 1 55.3 ? N4P COA 207 A 1 HETATM 46 C C3P COA . . . E 3 -18.609 -33.517 -11.696 1 55.62 ? C3P COA 207 A 1 HETATM 47 C C2P COA . . . E 3 -18.706 -35.032 -11.539 1 53.95 ? C2P COA 207 A 1 HETATM 48 S S1P COA . . . E 3 -19.438 -35.859 -13.023 1 56.36 ? S1P COA 207 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #