data_1KS4
#
_model_server_result.job_id            FvLglCz6Kp85fh6NyT1WjA 
_model_server_result.datetime_utc      '2024-12-27 02:46:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ks4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":224}' 
#
_entry.id    1KS4 
#
_exptl.entry_id    1KS4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.42 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALLADIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KS4 
_cell.length_a            131.088 
_cell.length_b            131.088 
_cell.length_c            71.985 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KS4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 32 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc1 A N VAL 33 A VAL 33 1_555 D PD PD . A PD 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc2 A O VAL 33 A VAL 33 1_555 D PD PD . A PD 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc3 A NE2 HIS 46 A HIS 46 1_555 C PD PD . A PD 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc4 A OE1 GLU 116 A GLU 116 1_555 B PD PD . A PD 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc5 A SD MET 118 A MET 118 1_555 B PD PD . A PD 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
#
_chem_comp.formula           'Pd 2' 
_chem_comp.formula_weight    106.42 
_chem_comp.id                PD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALLADIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1KS4 
_atom_sites.fract_transf_matrix[1][1]    0.007628 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013892 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PD A 1 224 224 PD PD . 
C 2 PD A 1 225 225 PD PD . 
D 2 PD A 1 226 226 PD PD . 
E 3 HOH A 1 227 227 HOH HOH . 
E 3 HOH A 2 228 228 HOH HOH . 
E 3 HOH A 3 229 229 HOH HOH . 
E 3 HOH A 4 230 230 HOH HOH . 
E 3 HOH A 5 231 231 HOH HOH . 
E 3 HOH A 6 232 232 HOH HOH . 
E 3 HOH A 7 233 233 HOH HOH . 
E 3 HOH A 8 234 234 HOH HOH . 
E 3 HOH A 9 235 235 HOH HOH . 
E 3 HOH A 10 236 236 HOH HOH . 
E 3 HOH A 11 237 237 HOH HOH . 
E 3 HOH A 12 238 238 HOH HOH . 
E 3 HOH A 13 239 239 HOH HOH . 
E 3 HOH A 14 240 240 HOH HOH . 
E 3 HOH A 15 241 241 HOH HOH . 
E 3 HOH A 16 242 242 HOH HOH . 
E 3 HOH A 17 243 243 HOH HOH . 
E 3 HOH A 18 244 244 HOH HOH . 
E 3 HOH A 19 245 245 HOH HOH . 
E 3 HOH A 20 246 246 HOH HOH . 
E 3 HOH A 21 247 247 HOH HOH . 
E 3 HOH A 22 248 248 HOH HOH . 
E 3 HOH A 23 249 249 HOH HOH . 
E 3 HOH A 24 250 250 HOH HOH . 
E 3 HOH A 25 251 251 HOH HOH . 
E 3 HOH A 26 252 252 HOH HOH . 
E 3 HOH A 27 253 253 HOH HOH . 
E 3 HOH A 28 254 254 HOH HOH . 
E 3 HOH A 29 255 255 HOH HOH . 
E 3 HOH A 30 256 256 HOH HOH . 
E 3 HOH A 31 257 257 HOH HOH . 
E 3 HOH A 32 258 258 HOH HOH . 
E 3 HOH A 33 259 259 HOH HOH . 
E 3 HOH A 34 260 260 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           PD 
_atom_site.label_atom_id         PD 
_atom_site.label_comp_id         PD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               81.315 
_atom_site.Cartn_y               87.648 
_atom_site.Cartn_z               -13.949 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        98.27 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          PD 
_atom_site.auth_comp_id          PD 
_atom_site.auth_seq_id           224 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#