data_1KSG # _model_server_result.job_id 230U-99RlHIJWgVRgFLK8A _model_server_result.datetime_utc '2024-11-23 06:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ksg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1KSG # _exptl.entry_id 1KSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94 _cell.angle_gamma 90 _cell.entry_id 1KSG _cell.length_a 48.1 _cell.length_b 45.7 _cell.length_c 74.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 32 A THR 30 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OG1 THR 49 A THR 47 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 D O2G GTP . A GTP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 D O2B GTP . A GTP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc5 C MG MG . A MG 202 1_555 E O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 1KSG _atom_sites.fract_transf_matrix[1][1] 0.02079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001454 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021882 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 202 2 MG MG . D 4 GTP A 1 201 1 GTP GTP . E 5 HOH A 1 203 1 HOH WAT . E 5 HOH A 2 204 2 HOH WAT . E 5 HOH A 3 205 3 HOH WAT . E 5 HOH A 4 206 4 HOH WAT . E 5 HOH A 5 207 5 HOH WAT . E 5 HOH A 6 208 6 HOH WAT . E 5 HOH A 7 209 8 HOH WAT . E 5 HOH A 8 210 9 HOH WAT . E 5 HOH A 9 211 10 HOH WAT . E 5 HOH A 10 212 11 HOH WAT . E 5 HOH A 11 213 12 HOH WAT . E 5 HOH A 12 214 13 HOH WAT . E 5 HOH A 13 215 14 HOH WAT . E 5 HOH A 14 216 15 HOH WAT . E 5 HOH A 15 217 18 HOH WAT . E 5 HOH A 16 218 21 HOH WAT . E 5 HOH A 17 219 22 HOH WAT . E 5 HOH A 18 220 23 HOH WAT . E 5 HOH A 19 221 24 HOH WAT . E 5 HOH A 20 222 25 HOH WAT . E 5 HOH A 21 223 30 HOH WAT . E 5 HOH A 22 224 33 HOH WAT . E 5 HOH A 23 225 34 HOH WAT . E 5 HOH A 24 226 35 HOH WAT . E 5 HOH A 25 227 36 HOH WAT . E 5 HOH A 26 228 37 HOH WAT . E 5 HOH A 27 229 38 HOH WAT . E 5 HOH A 28 230 39 HOH WAT . E 5 HOH A 29 231 40 HOH WAT . E 5 HOH A 30 232 41 HOH WAT . E 5 HOH A 31 233 46 HOH WAT . E 5 HOH A 32 234 47 HOH WAT . E 5 HOH A 33 235 48 HOH WAT . E 5 HOH A 34 236 49 HOH WAT . E 5 HOH A 35 237 50 HOH WAT . E 5 HOH A 36 238 51 HOH WAT . E 5 HOH A 37 239 52 HOH WAT . E 5 HOH A 38 240 53 HOH WAT . F 5 HOH B 1 151 7 HOH WAT . F 5 HOH B 2 152 16 HOH WAT . F 5 HOH B 3 153 17 HOH WAT . F 5 HOH B 4 154 19 HOH WAT . F 5 HOH B 5 155 20 HOH WAT . F 5 HOH B 6 156 26 HOH WAT . F 5 HOH B 7 157 27 HOH WAT . F 5 HOH B 8 158 28 HOH WAT . F 5 HOH B 9 159 29 HOH WAT . F 5 HOH B 10 160 31 HOH WAT . F 5 HOH B 11 161 32 HOH WAT . F 5 HOH B 12 162 42 HOH WAT . F 5 HOH B 13 163 43 HOH WAT . F 5 HOH B 14 164 44 HOH WAT . F 5 HOH B 15 165 45 HOH WAT . F 5 HOH B 16 166 54 HOH WAT . F 5 HOH B 17 167 55 HOH WAT . F 5 HOH B 18 168 56 HOH WAT . F 5 HOH B 19 169 57 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 15.78 -2.152 23.639 1 24.57 ? PG GTP 201 A 1 HETATM 2 O O1G GTP . . . D 4 15.564 -3.186 24.734 1 26.08 ? O1G GTP 201 A 1 HETATM 3 O O2G GTP . . . D 4 16.773 -1.08 23.971 1 22.4 ? O2G GTP 201 A 1 HETATM 4 O O3G GTP . . . D 4 14.478 -1.661 23.241 1 24.17 ? O3G GTP 201 A 1 HETATM 5 O O3B GTP . . . D 4 16.385 -3.02 22.368 1 24.13 ? O3B GTP 201 A 1 HETATM 6 P PB GTP . . . D 4 16.649 -2.59 20.791 1 26.84 ? PB GTP 201 A 1 HETATM 7 O O1B GTP . . . D 4 15.371 -2.873 20.016 1 24.46 ? O1B GTP 201 A 1 HETATM 8 O O2B GTP . . . D 4 17.118 -1.206 20.764 1 22.86 ? O2B GTP 201 A 1 HETATM 9 O O3A GTP . . . D 4 17.807 -3.543 20.397 1 30.05 ? O3A GTP 201 A 1 HETATM 10 P PA GTP . . . D 4 19.338 -3.242 20.013 1 32.71 ? PA GTP 201 A 1 HETATM 11 O O1A GTP . . . D 4 19.478 -2.366 18.863 1 33.29 ? O1A GTP 201 A 1 HETATM 12 O O2A GTP . . . D 4 19.992 -2.764 21.318 1 34.14 ? O2A GTP 201 A 1 HETATM 13 O O5' GTP . . . D 4 19.858 -4.761 19.549 1 34.21 ? O5' GTP 201 A 1 HETATM 14 C C5' GTP . . . D 4 19.77 -5.782 20.639 1 36.27 ? C5' GTP 201 A 1 HETATM 15 C C4' GTP . . . D 4 20.966 -6.756 20.141 1 38.74 ? C4' GTP 201 A 1 HETATM 16 O O4' GTP . . . D 4 20.757 -7.363 18.833 1 38.68 ? O4' GTP 201 A 1 HETATM 17 C C3' GTP . . . D 4 22.298 -6.157 20.074 1 40.42 ? C3' GTP 201 A 1 HETATM 18 O O3' GTP . . . D 4 23.269 -6.937 20.733 1 43.7 ? O3' GTP 201 A 1 HETATM 19 C C2' GTP . . . D 4 22.668 -5.87 18.586 1 40.57 ? C2' GTP 201 A 1 HETATM 20 O O2' GTP . . . D 4 23.962 -5.863 18.344 1 41.82 ? O2' GTP 201 A 1 HETATM 21 C C1' GTP . . . D 4 21.851 -7.19 17.927 1 38.53 ? C1' GTP 201 A 1 HETATM 22 N N9 GTP . . . D 4 21.302 -6.822 16.56 1 40.13 ? N9 GTP 201 A 1 HETATM 23 C C8 GTP . . . D 4 20.506 -5.706 16.316 1 37.67 ? C8 GTP 201 A 1 HETATM 24 N N7 GTP . . . D 4 20.315 -5.892 14.998 1 38.01 ? N7 GTP 201 A 1 HETATM 25 C C5 GTP . . . D 4 20.904 -7.015 14.439 1 38.41 ? C5 GTP 201 A 1 HETATM 26 C C6 GTP . . . D 4 20.881 -7.416 13.229 1 36.94 ? C6 GTP 201 A 1 HETATM 27 O O6 GTP . . . D 4 20.386 -7.091 12.116 1 33.17 ? O6 GTP 201 A 1 HETATM 28 N N1 GTP . . . D 4 21.676 -8.727 13.062 1 37.76 ? N1 GTP 201 A 1 HETATM 29 C C2 GTP . . . D 4 22.232 -9.189 14.134 1 39.5 ? C2 GTP 201 A 1 HETATM 30 N N2 GTP . . . D 4 23.003 -10.456 13.937 1 40.95 ? N2 GTP 201 A 1 HETATM 31 N N3 GTP . . . D 4 22.272 -8.751 15.411 1 40.43 ? N3 GTP 201 A 1 HETATM 32 C C4 GTP . . . D 4 21.511 -7.602 15.456 1 39.85 ? C4 GTP 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #