data_1KSJ # _model_server_result.job_id ct7KD868JdcbryJGhQcIsw _model_server_result.datetime_utc '2024-11-05 13:41:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ksj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 1KSJ # _exptl.entry_id 1KSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KSJ _cell.length_a 44.815 _cell.length_b 65.726 _cell.length_c 103.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KSJ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 22 A LEU 20 1_555 A N MSE 23 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 23 A MSE 21 1_555 A N LEU 24 A LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ARG 100 A ARG 98 1_555 A N MSE 101 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 101 A MSE 99 1_555 A N GLN 102 A GLN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C SER 136 A SER 134 1_555 A N CME 137 A CME 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C CME 137 A CME 135 1_555 A N ASN 138 A ASN 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C TRP 21 B TRP 19 1_555 B N MSE 22 B MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 22 B MSE 20 1_555 B N ASN 23 B ASN 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C GLN 72 B GLN 70 1_555 B N MSE 73 B MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 73 B MSE 71 1_555 B N GLU 74 B GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C GLN 87 B GLN 85 1_555 B N CME 88 B CME 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C CME 88 B CME 86 1_555 B N LEU 89 B LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OG1 THR 32 A THR 30 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A OG1 THR 49 A THR 47 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 F O1B GDP . A GDP 201 1_555 D MG MG . A MG 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 C O1 PO4 . A PO4 202 1_555 D MG MG . A MG 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc5 G O2B GTP . A GTP 203 1_555 D MG MG . A MG 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc6 G O2G GTP . A GTP 203 1_555 D MG MG . A MG 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc7 D MG MG . A MG 205 1_555 H O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 D MG MG . A MG 205 1_555 H O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 385 n n P O2 PO4 sing 386 n n P O3 PO4 sing 387 n n P O4 PO4 sing 388 n n # _atom_sites.entry_id 1KSJ _atom_sites.fract_transf_matrix[1][1] 0.022314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 202 202 PO4 PO4 . D 4 MG A 1 205 205 MG MG . E 5 BME A 1 236 236 BME BME . F 6 GDP A 1 201 201 GDP GDP . G 7 GTP A 1 203 203 GTP GTP . H 8 HOH A 1 237 204 HOH HOH . H 8 HOH A 2 238 1 HOH HOH . H 8 HOH A 3 239 2 HOH HOH . H 8 HOH A 4 240 3 HOH HOH . H 8 HOH A 5 241 7 HOH HOH . H 8 HOH A 6 242 10 HOH HOH . H 8 HOH A 7 243 11 HOH HOH . H 8 HOH A 8 244 12 HOH HOH . H 8 HOH A 9 245 13 HOH HOH . H 8 HOH A 10 246 18 HOH HOH . H 8 HOH A 11 247 19 HOH HOH . H 8 HOH A 12 248 21 HOH HOH . H 8 HOH A 13 249 22 HOH HOH . H 8 HOH A 14 250 23 HOH HOH . H 8 HOH A 15 251 24 HOH HOH . H 8 HOH A 16 252 25 HOH HOH . H 8 HOH A 17 253 27 HOH HOH . H 8 HOH A 18 254 29 HOH HOH . H 8 HOH A 19 255 31 HOH HOH . H 8 HOH A 20 256 33 HOH HOH . H 8 HOH A 21 257 35 HOH HOH . H 8 HOH A 22 258 36 HOH HOH . H 8 HOH A 23 259 39 HOH HOH . H 8 HOH A 24 260 40 HOH HOH . H 8 HOH A 25 261 42 HOH HOH . H 8 HOH A 26 262 43 HOH HOH . H 8 HOH A 27 263 44 HOH HOH . H 8 HOH A 28 264 45 HOH HOH . H 8 HOH A 29 265 47 HOH HOH . H 8 HOH A 30 266 52 HOH HOH . H 8 HOH A 31 267 58 HOH HOH . H 8 HOH A 32 268 59 HOH HOH . H 8 HOH A 33 269 62 HOH HOH . H 8 HOH A 34 270 67 HOH HOH . H 8 HOH A 35 271 68 HOH HOH . H 8 HOH A 36 272 69 HOH HOH . H 8 HOH A 37 273 70 HOH HOH . H 8 HOH A 38 274 74 HOH HOH . H 8 HOH A 39 275 75 HOH HOH . H 8 HOH A 40 276 77 HOH HOH . H 8 HOH A 41 277 78 HOH HOH . H 8 HOH A 42 278 81 HOH HOH . H 8 HOH A 43 279 84 HOH HOH . H 8 HOH A 44 280 87 HOH HOH . H 8 HOH A 45 281 90 HOH HOH . H 8 HOH A 46 282 92 HOH HOH . H 8 HOH A 47 283 93 HOH HOH . H 8 HOH A 48 284 100 HOH HOH . H 8 HOH A 49 285 103 HOH HOH . H 8 HOH A 50 286 104 HOH HOH . H 8 HOH A 51 287 116 HOH HOH . H 8 HOH A 52 288 118 HOH HOH . H 8 HOH A 53 289 119 HOH HOH . H 8 HOH A 54 290 125 HOH HOH . H 8 HOH A 55 291 129 HOH HOH . H 8 HOH A 56 292 130 HOH HOH . H 8 HOH A 57 293 133 HOH HOH . I 8 HOH B 1 151 4 HOH HOH . I 8 HOH B 2 152 5 HOH HOH . I 8 HOH B 3 153 6 HOH HOH . I 8 HOH B 4 154 8 HOH HOH . I 8 HOH B 5 155 9 HOH HOH . I 8 HOH B 6 156 14 HOH HOH . I 8 HOH B 7 157 15 HOH HOH . I 8 HOH B 8 158 16 HOH HOH . I 8 HOH B 9 159 17 HOH HOH . I 8 HOH B 10 160 28 HOH HOH . I 8 HOH B 11 161 32 HOH HOH . I 8 HOH B 12 162 34 HOH HOH . I 8 HOH B 13 163 37 HOH HOH . I 8 HOH B 14 164 38 HOH HOH . I 8 HOH B 15 165 41 HOH HOH . I 8 HOH B 16 166 48 HOH HOH . I 8 HOH B 17 167 49 HOH HOH . I 8 HOH B 18 168 50 HOH HOH . I 8 HOH B 19 169 51 HOH HOH . I 8 HOH B 20 170 53 HOH HOH . I 8 HOH B 21 171 56 HOH HOH . I 8 HOH B 22 172 57 HOH HOH . I 8 HOH B 23 173 71 HOH HOH . I 8 HOH B 24 174 72 HOH HOH . I 8 HOH B 25 175 73 HOH HOH . I 8 HOH B 26 176 80 HOH HOH . I 8 HOH B 27 177 82 HOH HOH . I 8 HOH B 28 178 83 HOH HOH . I 8 HOH B 29 179 85 HOH HOH . I 8 HOH B 30 180 86 HOH HOH . I 8 HOH B 31 181 88 HOH HOH . I 8 HOH B 32 182 89 HOH HOH . I 8 HOH B 33 183 91 HOH HOH . I 8 HOH B 34 184 94 HOH HOH . I 8 HOH B 35 185 95 HOH HOH . I 8 HOH B 36 186 96 HOH HOH . I 8 HOH B 37 187 98 HOH HOH . I 8 HOH B 38 188 99 HOH HOH . I 8 HOH B 39 189 101 HOH HOH . I 8 HOH B 40 190 105 HOH HOH . I 8 HOH B 41 191 107 HOH HOH . I 8 HOH B 42 192 110 HOH HOH . I 8 HOH B 43 193 115 HOH HOH . I 8 HOH B 44 194 120 HOH HOH . I 8 HOH B 45 195 122 HOH HOH . I 8 HOH B 46 196 127 HOH HOH . I 8 HOH B 47 197 128 HOH HOH . I 8 HOH B 48 198 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . A . C 3 15.992 7.175 40.571 0.74 51.46 ? P PO4 202 A 1 HETATM 2 O O1 PO4 . A . C 3 17.098 6.366 41.144 0.74 57.42 ? O1 PO4 202 A 1 HETATM 3 O O2 PO4 . A . C 3 14.707 6.698 41.14 0.74 56.84 ? O2 PO4 202 A 1 HETATM 4 O O3 PO4 . A . C 3 15.983 6.992 39.092 0.74 48.07 ? O3 PO4 202 A 1 HETATM 5 O O4 PO4 . A . C 3 16.18 8.609 40.939 0.74 58.34 ? O4 PO4 202 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #