data_1KSJ # _model_server_result.job_id hIohWtHwiy3C6vO8oekSRQ _model_server_result.datetime_utc '2024-11-05 13:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ksj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 1KSJ # _exptl.entry_id 1KSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KSJ _cell.length_a 44.815 _cell.length_b 65.726 _cell.length_c 103.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KSJ _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 22 A LEU 20 1_555 A N MSE 23 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 23 A MSE 21 1_555 A N LEU 24 A LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ARG 100 A ARG 98 1_555 A N MSE 101 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 101 A MSE 99 1_555 A N GLN 102 A GLN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C SER 136 A SER 134 1_555 A N CME 137 A CME 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C CME 137 A CME 135 1_555 A N ASN 138 A ASN 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C TRP 21 B TRP 19 1_555 B N MSE 22 B MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 22 B MSE 20 1_555 B N ASN 23 B ASN 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 B C GLN 72 B GLN 70 1_555 B N MSE 73 B MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C MSE 73 B MSE 71 1_555 B N GLU 74 B GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C GLN 87 B GLN 85 1_555 B N CME 88 B CME 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C CME 88 B CME 86 1_555 B N LEU 89 B LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OG1 THR 32 A THR 30 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A OG1 THR 49 A THR 47 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc3 F O1B GDP . A GDP 201 1_555 D MG MG . A MG 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 C O1 PO4 . A PO4 202 1_555 D MG MG . A MG 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc5 G O2B GTP . A GTP 203 1_555 D MG MG . A MG 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc6 G O2G GTP . A GTP 203 1_555 D MG MG . A MG 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc7 D MG MG . A MG 205 1_555 H O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 D MG MG . A MG 205 1_555 H O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 204 n n PG O2G GTP sing 205 n n PG O3G GTP sing 206 n n PG O3B GTP sing 207 n n O2G HOG2 GTP sing 208 n n O3G HOG3 GTP sing 209 n n O3B PB GTP sing 210 n n PB O1B GTP doub 211 n n PB O2B GTP sing 212 n n PB O3A GTP sing 213 n n O2B HOB2 GTP sing 214 n n O3A PA GTP sing 215 n n PA O1A GTP doub 216 n n PA O2A GTP sing 217 n n PA O5' GTP sing 218 n n O2A HOA2 GTP sing 219 n n O5' C5' GTP sing 220 n n C5' C4' GTP sing 221 n n C5' H5' GTP sing 222 n n C5' "H5''" GTP sing 223 n n C4' O4' GTP sing 224 n n C4' C3' GTP sing 225 n n C4' H4' GTP sing 226 n n O4' C1' GTP sing 227 n n C3' O3' GTP sing 228 n n C3' C2' GTP sing 229 n n C3' H3' GTP sing 230 n n O3' HO3' GTP sing 231 n n C2' O2' GTP sing 232 n n C2' C1' GTP sing 233 n n C2' H2' GTP sing 234 n n O2' HO2' GTP sing 235 n n C1' N9 GTP sing 236 n n C1' H1' GTP sing 237 n n N9 C8 GTP sing 238 n y N9 C4 GTP sing 239 n y C8 N7 GTP doub 240 n y C8 H8 GTP sing 241 n n N7 C5 GTP sing 242 n y C5 C6 GTP sing 243 n n C5 C4 GTP doub 244 n y C6 O6 GTP doub 245 n n C6 N1 GTP sing 246 n n N1 C2 GTP sing 247 n n N1 HN1 GTP sing 248 n n C2 N2 GTP sing 249 n n C2 N3 GTP doub 250 n n N2 HN21 GTP sing 251 n n N2 HN22 GTP sing 252 n n N3 C4 GTP sing 253 n n # _atom_sites.entry_id 1KSJ _atom_sites.fract_transf_matrix[1][1] 0.022314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 202 202 PO4 PO4 . D 4 MG A 1 205 205 MG MG . E 5 BME A 1 236 236 BME BME . F 6 GDP A 1 201 201 GDP GDP . G 7 GTP A 1 203 203 GTP GTP . H 8 HOH A 1 237 204 HOH HOH . H 8 HOH A 2 238 1 HOH HOH . H 8 HOH A 3 239 2 HOH HOH . H 8 HOH A 4 240 3 HOH HOH . H 8 HOH A 5 241 7 HOH HOH . H 8 HOH A 6 242 10 HOH HOH . H 8 HOH A 7 243 11 HOH HOH . H 8 HOH A 8 244 12 HOH HOH . H 8 HOH A 9 245 13 HOH HOH . H 8 HOH A 10 246 18 HOH HOH . H 8 HOH A 11 247 19 HOH HOH . H 8 HOH A 12 248 21 HOH HOH . H 8 HOH A 13 249 22 HOH HOH . H 8 HOH A 14 250 23 HOH HOH . H 8 HOH A 15 251 24 HOH HOH . H 8 HOH A 16 252 25 HOH HOH . H 8 HOH A 17 253 27 HOH HOH . H 8 HOH A 18 254 29 HOH HOH . H 8 HOH A 19 255 31 HOH HOH . H 8 HOH A 20 256 33 HOH HOH . H 8 HOH A 21 257 35 HOH HOH . H 8 HOH A 22 258 36 HOH HOH . H 8 HOH A 23 259 39 HOH HOH . H 8 HOH A 24 260 40 HOH HOH . H 8 HOH A 25 261 42 HOH HOH . H 8 HOH A 26 262 43 HOH HOH . H 8 HOH A 27 263 44 HOH HOH . H 8 HOH A 28 264 45 HOH HOH . H 8 HOH A 29 265 47 HOH HOH . H 8 HOH A 30 266 52 HOH HOH . H 8 HOH A 31 267 58 HOH HOH . H 8 HOH A 32 268 59 HOH HOH . H 8 HOH A 33 269 62 HOH HOH . H 8 HOH A 34 270 67 HOH HOH . H 8 HOH A 35 271 68 HOH HOH . H 8 HOH A 36 272 69 HOH HOH . H 8 HOH A 37 273 70 HOH HOH . H 8 HOH A 38 274 74 HOH HOH . H 8 HOH A 39 275 75 HOH HOH . H 8 HOH A 40 276 77 HOH HOH . H 8 HOH A 41 277 78 HOH HOH . H 8 HOH A 42 278 81 HOH HOH . H 8 HOH A 43 279 84 HOH HOH . H 8 HOH A 44 280 87 HOH HOH . H 8 HOH A 45 281 90 HOH HOH . H 8 HOH A 46 282 92 HOH HOH . H 8 HOH A 47 283 93 HOH HOH . H 8 HOH A 48 284 100 HOH HOH . H 8 HOH A 49 285 103 HOH HOH . H 8 HOH A 50 286 104 HOH HOH . H 8 HOH A 51 287 116 HOH HOH . H 8 HOH A 52 288 118 HOH HOH . H 8 HOH A 53 289 119 HOH HOH . H 8 HOH A 54 290 125 HOH HOH . H 8 HOH A 55 291 129 HOH HOH . H 8 HOH A 56 292 130 HOH HOH . H 8 HOH A 57 293 133 HOH HOH . I 8 HOH B 1 151 4 HOH HOH . I 8 HOH B 2 152 5 HOH HOH . I 8 HOH B 3 153 6 HOH HOH . I 8 HOH B 4 154 8 HOH HOH . I 8 HOH B 5 155 9 HOH HOH . I 8 HOH B 6 156 14 HOH HOH . I 8 HOH B 7 157 15 HOH HOH . I 8 HOH B 8 158 16 HOH HOH . I 8 HOH B 9 159 17 HOH HOH . I 8 HOH B 10 160 28 HOH HOH . I 8 HOH B 11 161 32 HOH HOH . I 8 HOH B 12 162 34 HOH HOH . I 8 HOH B 13 163 37 HOH HOH . I 8 HOH B 14 164 38 HOH HOH . I 8 HOH B 15 165 41 HOH HOH . I 8 HOH B 16 166 48 HOH HOH . I 8 HOH B 17 167 49 HOH HOH . I 8 HOH B 18 168 50 HOH HOH . I 8 HOH B 19 169 51 HOH HOH . I 8 HOH B 20 170 53 HOH HOH . I 8 HOH B 21 171 56 HOH HOH . I 8 HOH B 22 172 57 HOH HOH . I 8 HOH B 23 173 71 HOH HOH . I 8 HOH B 24 174 72 HOH HOH . I 8 HOH B 25 175 73 HOH HOH . I 8 HOH B 26 176 80 HOH HOH . I 8 HOH B 27 177 82 HOH HOH . I 8 HOH B 28 178 83 HOH HOH . I 8 HOH B 29 179 85 HOH HOH . I 8 HOH B 30 180 86 HOH HOH . I 8 HOH B 31 181 88 HOH HOH . I 8 HOH B 32 182 89 HOH HOH . I 8 HOH B 33 183 91 HOH HOH . I 8 HOH B 34 184 94 HOH HOH . I 8 HOH B 35 185 95 HOH HOH . I 8 HOH B 36 186 96 HOH HOH . I 8 HOH B 37 187 98 HOH HOH . I 8 HOH B 38 188 99 HOH HOH . I 8 HOH B 39 189 101 HOH HOH . I 8 HOH B 40 190 105 HOH HOH . I 8 HOH B 41 191 107 HOH HOH . I 8 HOH B 42 192 110 HOH HOH . I 8 HOH B 43 193 115 HOH HOH . I 8 HOH B 44 194 120 HOH HOH . I 8 HOH B 45 195 122 HOH HOH . I 8 HOH B 46 196 127 HOH HOH . I 8 HOH B 47 197 128 HOH HOH . I 8 HOH B 48 198 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . B . G 7 15.651 6.719 40.47 0.26 2.16 ? PG GTP 203 A 1 HETATM 2 O O1G GTP . B . G 7 14.647 7.797 40.883 0.26 7.03 ? O1G GTP 203 A 1 HETATM 3 O O2G GTP . B . G 7 16.766 6.474 41.478 0.26 7.25 ? O2G GTP 203 A 1 HETATM 4 O O3G GTP . B . G 7 16.06 6.896 39.089 0.26 4.1 ? O3G GTP 203 A 1 HETATM 5 O O3B GTP . B . G 7 14.745 5.358 40.482 0.26 4.04 ? O3B GTP 203 A 1 HETATM 6 P PB GTP . B . G 7 15.19 3.832 40.051 0.26 6.59 ? PB GTP 203 A 1 HETATM 7 O O1B GTP . B . G 7 14.89 3.677 38.548 0.26 10.88 ? O1B GTP 203 A 1 HETATM 8 O O2B GTP . B . G 7 16.569 3.601 40.503 0.26 10.52 ? O2B GTP 203 A 1 HETATM 9 O O3A GTP . B . G 7 14.186 2.999 40.909 0.26 9.02 ? O3A GTP 203 A 1 HETATM 10 P PA GTP . B . G 7 14.422 2.105 42.219 0.26 11.86 ? PA GTP 203 A 1 HETATM 11 O O1A GTP . B . G 7 15.298 0.972 41.974 0.26 16.55 ? O1A GTP 203 A 1 HETATM 12 O O2A GTP . B . G 7 14.778 3.092 43.343 0.26 16.85 ? O2A GTP 203 A 1 HETATM 13 O O5' GTP . B . G 7 12.904 1.44 42.444 0.26 15.16 ? O5' GTP 203 A 1 HETATM 14 C C5' GTP . B . G 7 11.859 2.466 42.71 0.26 17.22 ? C5' GTP 203 A 1 HETATM 15 C C4' GTP . B . G 7 10.746 1.477 43.334 0.26 19.92 ? C4' GTP 203 A 1 HETATM 16 O O4' GTP . B . G 7 10.202 0.466 42.465 0.26 21.17 ? O4' GTP 203 A 1 HETATM 17 C C3' GTP . B . G 7 10.978 0.822 44.589 0.26 21.23 ? C3' GTP 203 A 1 HETATM 18 O O3' GTP . B . G 7 9.953 1.087 45.515 0.26 21.99 ? O3' GTP 203 A 1 HETATM 19 C C2' GTP . B . G 7 11.266 -0.699 44.372 0.26 21.78 ? C2' GTP 203 A 1 HETATM 20 O O2' GTP . B . G 7 10.782 -1.434 45.35 0.26 22 ? O2' GTP 203 A 1 HETATM 21 C C1' GTP . B . G 7 10.093 -0.804 43.121 0.26 21.94 ? C1' GTP 203 A 1 HETATM 22 N N9 GTP . B . G 7 10.544 -1.84 42.108 0.26 22.96 ? N9 GTP 203 A 1 HETATM 23 C C8 GTP . B . G 7 11.75 -1.763 41.417 0.26 23.04 ? C8 GTP 203 A 1 HETATM 24 N N7 GTP . B . G 7 11.609 -2.879 40.664 0.26 23.15 ? N7 GTP 203 A 1 HETATM 25 C C5 GTP . B . G 7 10.426 -3.603 40.851 0.26 23.25 ? C5 GTP 203 A 1 HETATM 26 C C6 GTP . B . G 7 10.048 -4.656 40.264 0.26 23 ? C6 GTP 203 A 1 HETATM 27 O O6 GTP . B . G 7 10.433 -5.465 39.366 0.26 22.46 ? O6 GTP 203 A 1 HETATM 28 N N1 GTP . B . G 7 8.707 -5.091 40.785 0.26 23.09 ? N1 GTP 203 A 1 HETATM 29 C C2 GTP . B . G 7 8.207 -4.337 41.69 0.26 22.65 ? C2 GTP 203 A 1 HETATM 30 N N2 GTP . B . G 7 6.874 -4.791 42.188 0.26 22.01 ? N2 GTP 203 A 1 HETATM 31 N N3 GTP . B . G 7 8.592 -3.221 42.292 0.26 23.26 ? N3 GTP 203 A 1 HETATM 32 C C4 GTP . B . G 7 9.784 -2.924 41.773 0.26 23.3 ? C4 GTP 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #