data_1KSJ
#
_model_server_result.job_id            636KDzcYRL_MzmVh7vnPnQ 
_model_server_result.datetime_utc      '2024-11-05 14:05:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ksj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":205}' 
#
_entry.id    1KSJ 
#
_exptl.entry_id    1KSJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KSJ 
_cell.length_a            44.815 
_cell.length_b            65.726 
_cell.length_c            103.99 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KSJ 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 22 A LEU 20 1_555 A N MSE 23 A MSE 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C MSE 23 A MSE 21 1_555 A N LEU 24 A LEU 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C ARG 100 A ARG 98 1_555 A N MSE 101 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 A C MSE 101 A MSE 99 1_555 A N GLN 102 A GLN 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C SER 136 A SER 134 1_555 A N CME 137 A CME 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C CME 137 A CME 135 1_555 A N ASN 138 A ASN 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 B C TRP 21 B TRP 19 1_555 B N MSE 22 B MSE 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 B C MSE 22 B MSE 20 1_555 B N ASN 23 B ASN 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale9 B C GLN 72 B GLN 70 1_555 B N MSE 73 B MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 B C MSE 73 B MSE 71 1_555 B N GLU 74 B GLU 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 B C GLN 87 B GLN 85 1_555 B N CME 88 B CME 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 B C CME 88 B CME 86 1_555 B N LEU 89 B LEU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OG1 THR 32 A THR 30 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc2 A OG1 THR 49 A THR 47 1_555 D MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc3 F O1B GDP . A GDP 201 1_555 D MG MG . A MG 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc4 C O1 PO4 . A PO4 202 1_555 D MG MG . A MG 205 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.816 ? 
metalc ? metalc5 G O2B GTP . A GTP 203 1_555 D MG MG . A MG 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc6 G O2G GTP . A GTP 203 1_555 D MG MG . A MG 205 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc7 D MG MG . A MG 205 1_555 H O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc8 D MG MG . A MG 205 1_555 H O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1KSJ 
_atom_sites.fract_transf_matrix[1][1]    0.022314 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009616 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PO4 A 1 202 202 PO4 PO4 . 
D 4 MG A 1 205 205 MG MG . 
E 5 BME A 1 236 236 BME BME . 
F 6 GDP A 1 201 201 GDP GDP . 
G 7 GTP A 1 203 203 GTP GTP . 
H 8 HOH A 1 237 204 HOH HOH . 
H 8 HOH A 2 238 1 HOH HOH . 
H 8 HOH A 3 239 2 HOH HOH . 
H 8 HOH A 4 240 3 HOH HOH . 
H 8 HOH A 5 241 7 HOH HOH . 
H 8 HOH A 6 242 10 HOH HOH . 
H 8 HOH A 7 243 11 HOH HOH . 
H 8 HOH A 8 244 12 HOH HOH . 
H 8 HOH A 9 245 13 HOH HOH . 
H 8 HOH A 10 246 18 HOH HOH . 
H 8 HOH A 11 247 19 HOH HOH . 
H 8 HOH A 12 248 21 HOH HOH . 
H 8 HOH A 13 249 22 HOH HOH . 
H 8 HOH A 14 250 23 HOH HOH . 
H 8 HOH A 15 251 24 HOH HOH . 
H 8 HOH A 16 252 25 HOH HOH . 
H 8 HOH A 17 253 27 HOH HOH . 
H 8 HOH A 18 254 29 HOH HOH . 
H 8 HOH A 19 255 31 HOH HOH . 
H 8 HOH A 20 256 33 HOH HOH . 
H 8 HOH A 21 257 35 HOH HOH . 
H 8 HOH A 22 258 36 HOH HOH . 
H 8 HOH A 23 259 39 HOH HOH . 
H 8 HOH A 24 260 40 HOH HOH . 
H 8 HOH A 25 261 42 HOH HOH . 
H 8 HOH A 26 262 43 HOH HOH . 
H 8 HOH A 27 263 44 HOH HOH . 
H 8 HOH A 28 264 45 HOH HOH . 
H 8 HOH A 29 265 47 HOH HOH . 
H 8 HOH A 30 266 52 HOH HOH . 
H 8 HOH A 31 267 58 HOH HOH . 
H 8 HOH A 32 268 59 HOH HOH . 
H 8 HOH A 33 269 62 HOH HOH . 
H 8 HOH A 34 270 67 HOH HOH . 
H 8 HOH A 35 271 68 HOH HOH . 
H 8 HOH A 36 272 69 HOH HOH . 
H 8 HOH A 37 273 70 HOH HOH . 
H 8 HOH A 38 274 74 HOH HOH . 
H 8 HOH A 39 275 75 HOH HOH . 
H 8 HOH A 40 276 77 HOH HOH . 
H 8 HOH A 41 277 78 HOH HOH . 
H 8 HOH A 42 278 81 HOH HOH . 
H 8 HOH A 43 279 84 HOH HOH . 
H 8 HOH A 44 280 87 HOH HOH . 
H 8 HOH A 45 281 90 HOH HOH . 
H 8 HOH A 46 282 92 HOH HOH . 
H 8 HOH A 47 283 93 HOH HOH . 
H 8 HOH A 48 284 100 HOH HOH . 
H 8 HOH A 49 285 103 HOH HOH . 
H 8 HOH A 50 286 104 HOH HOH . 
H 8 HOH A 51 287 116 HOH HOH . 
H 8 HOH A 52 288 118 HOH HOH . 
H 8 HOH A 53 289 119 HOH HOH . 
H 8 HOH A 54 290 125 HOH HOH . 
H 8 HOH A 55 291 129 HOH HOH . 
H 8 HOH A 56 292 130 HOH HOH . 
H 8 HOH A 57 293 133 HOH HOH . 
I 8 HOH B 1 151 4 HOH HOH . 
I 8 HOH B 2 152 5 HOH HOH . 
I 8 HOH B 3 153 6 HOH HOH . 
I 8 HOH B 4 154 8 HOH HOH . 
I 8 HOH B 5 155 9 HOH HOH . 
I 8 HOH B 6 156 14 HOH HOH . 
I 8 HOH B 7 157 15 HOH HOH . 
I 8 HOH B 8 158 16 HOH HOH . 
I 8 HOH B 9 159 17 HOH HOH . 
I 8 HOH B 10 160 28 HOH HOH . 
I 8 HOH B 11 161 32 HOH HOH . 
I 8 HOH B 12 162 34 HOH HOH . 
I 8 HOH B 13 163 37 HOH HOH . 
I 8 HOH B 14 164 38 HOH HOH . 
I 8 HOH B 15 165 41 HOH HOH . 
I 8 HOH B 16 166 48 HOH HOH . 
I 8 HOH B 17 167 49 HOH HOH . 
I 8 HOH B 18 168 50 HOH HOH . 
I 8 HOH B 19 169 51 HOH HOH . 
I 8 HOH B 20 170 53 HOH HOH . 
I 8 HOH B 21 171 56 HOH HOH . 
I 8 HOH B 22 172 57 HOH HOH . 
I 8 HOH B 23 173 71 HOH HOH . 
I 8 HOH B 24 174 72 HOH HOH . 
I 8 HOH B 25 175 73 HOH HOH . 
I 8 HOH B 26 176 80 HOH HOH . 
I 8 HOH B 27 177 82 HOH HOH . 
I 8 HOH B 28 178 83 HOH HOH . 
I 8 HOH B 29 179 85 HOH HOH . 
I 8 HOH B 30 180 86 HOH HOH . 
I 8 HOH B 31 181 88 HOH HOH . 
I 8 HOH B 32 182 89 HOH HOH . 
I 8 HOH B 33 183 91 HOH HOH . 
I 8 HOH B 34 184 94 HOH HOH . 
I 8 HOH B 35 185 95 HOH HOH . 
I 8 HOH B 36 186 96 HOH HOH . 
I 8 HOH B 37 187 98 HOH HOH . 
I 8 HOH B 38 188 99 HOH HOH . 
I 8 HOH B 39 189 101 HOH HOH . 
I 8 HOH B 40 190 105 HOH HOH . 
I 8 HOH B 41 191 107 HOH HOH . 
I 8 HOH B 42 192 110 HOH HOH . 
I 8 HOH B 43 193 115 HOH HOH . 
I 8 HOH B 44 194 120 HOH HOH . 
I 8 HOH B 45 195 122 HOH HOH . 
I 8 HOH B 46 196 127 HOH HOH . 
I 8 HOH B 47 197 128 HOH HOH . 
I 8 HOH B 48 198 131 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               18.073 
_atom_site.Cartn_y               4.849 
_atom_site.Cartn_z               41.362 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.87 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           205 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#