data_1KSK
#
_model_server_result.job_id            bPTqUXGzWSEgfS_CZuAH0w 
_model_server_result.datetime_utc      '2024-12-21 13:15:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ksk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":232}' 
#
_entry.id    1KSK 
#
_exptl.entry_id    1KSK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.087 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            URACIL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KSK 
_cell.length_a            48.771 
_cell.length_b            149.22 
_cell.length_c            35.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KSK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C HIS 3 A HIS 1 1_555 A N MSE 4 A MSE 1 1_555 C ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ARG 5 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A C PHE 66 A PHE 63 1_555 A N MSE 67 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 A C MSE 67 A MSE 64 1_555 A N LEU 68 A LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C LEU 113 A LEU 110 1_555 A N MSE 114 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 A C MSE 114 A MSE 111 1_555 A N THR 115 A THR 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C ARG 191 A ARG 188 1_555 A N MSE 192 A MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 192 A MSE 189 1_555 A N PHE 193 A PHE 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C4 H4 N2 O2' 
_chem_comp.formula_weight    112.087 
_chem_comp.id                URA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              URACIL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 URA sing 377 n n 
N1 C6 URA sing 378 n n 
N1 HN1 URA sing 379 n n 
C2 O2 URA doub 380 n n 
C2 N3 URA sing 381 n n 
N3 C4 URA sing 382 n n 
N3 HN3 URA sing 383 n n 
C4 O4 URA doub 384 n n 
C4 C5 URA sing 385 n n 
C5 C6 URA doub 386 n n 
C5 H5 URA sing 387 n n 
C6 H6 URA sing 388 n n 
#
_atom_sites.entry_id                     1KSK 
_atom_sites.fract_transf_matrix[1][1]    0.020504 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028409 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 URA A 1 232 232 URA URA . 
C 3 HOH A 1 233 233 HOH HOH . 
C 3 HOH A 2 234 234 HOH HOH . 
C 3 HOH A 3 235 235 HOH HOH . 
C 3 HOH A 4 236 236 HOH HOH . 
C 3 HOH A 5 237 237 HOH HOH . 
C 3 HOH A 6 238 238 HOH HOH . 
C 3 HOH A 7 239 239 HOH HOH . 
C 3 HOH A 8 240 240 HOH HOH . 
C 3 HOH A 9 241 241 HOH HOH . 
C 3 HOH A 10 242 242 HOH HOH . 
C 3 HOH A 11 243 243 HOH HOH . 
C 3 HOH A 12 244 244 HOH HOH . 
C 3 HOH A 13 245 245 HOH HOH . 
C 3 HOH A 14 246 246 HOH HOH . 
C 3 HOH A 15 247 247 HOH HOH . 
C 3 HOH A 16 248 248 HOH HOH . 
C 3 HOH A 17 249 249 HOH HOH . 
C 3 HOH A 18 250 250 HOH HOH . 
C 3 HOH A 19 251 251 HOH HOH . 
C 3 HOH A 20 252 252 HOH HOH . 
C 3 HOH A 21 253 253 HOH HOH . 
C 3 HOH A 22 254 254 HOH HOH . 
C 3 HOH A 23 255 255 HOH HOH . 
C 3 HOH A 24 256 256 HOH HOH . 
C 3 HOH A 25 257 257 HOH HOH . 
C 3 HOH A 26 258 258 HOH HOH . 
C 3 HOH A 27 259 259 HOH HOH . 
C 3 HOH A 28 260 260 HOH HOH . 
C 3 HOH A 29 261 261 HOH HOH . 
C 3 HOH A 30 262 262 HOH HOH . 
C 3 HOH A 31 263 263 HOH HOH . 
C 3 HOH A 32 264 264 HOH HOH . 
C 3 HOH A 33 265 265 HOH HOH . 
C 3 HOH A 34 266 266 HOH HOH . 
C 3 HOH A 35 267 267 HOH HOH . 
C 3 HOH A 36 268 268 HOH HOH . 
C 3 HOH A 37 269 269 HOH HOH . 
C 3 HOH A 38 270 270 HOH HOH . 
C 3 HOH A 39 271 271 HOH HOH . 
C 3 HOH A 40 272 272 HOH HOH . 
C 3 HOH A 41 273 273 HOH HOH . 
C 3 HOH A 42 274 274 HOH HOH . 
C 3 HOH A 43 275 275 HOH HOH . 
C 3 HOH A 44 276 276 HOH HOH . 
C 3 HOH A 45 277 277 HOH HOH . 
C 3 HOH A 46 278 278 HOH HOH . 
C 3 HOH A 47 279 279 HOH HOH . 
C 3 HOH A 48 280 280 HOH HOH . 
C 3 HOH A 49 281 281 HOH HOH . 
C 3 HOH A 50 282 282 HOH HOH . 
C 3 HOH A 51 283 283 HOH HOH . 
C 3 HOH A 52 284 284 HOH HOH . 
C 3 HOH A 53 285 285 HOH HOH . 
C 3 HOH A 54 286 286 HOH HOH . 
C 3 HOH A 55 287 287 HOH HOH . 
C 3 HOH A 56 288 288 HOH HOH . 
C 3 HOH A 57 289 289 HOH HOH . 
C 3 HOH A 58 290 290 HOH HOH . 
C 3 HOH A 59 291 291 HOH HOH . 
C 3 HOH A 60 292 292 HOH HOH . 
C 3 HOH A 61 293 293 HOH HOH . 
C 3 HOH A 62 294 294 HOH HOH . 
C 3 HOH A 63 295 295 HOH HOH . 
C 3 HOH A 64 296 296 HOH HOH . 
C 3 HOH A 65 297 297 HOH HOH . 
C 3 HOH A 66 298 298 HOH HOH . 
C 3 HOH A 67 299 299 HOH HOH . 
C 3 HOH A 68 300 300 HOH HOH . 
C 3 HOH A 69 301 301 HOH HOH . 
C 3 HOH A 70 302 302 HOH HOH . 
C 3 HOH A 71 303 303 HOH HOH . 
C 3 HOH A 72 304 304 HOH HOH . 
C 3 HOH A 73 305 305 HOH HOH . 
C 3 HOH A 74 306 306 HOH HOH . 
C 3 HOH A 75 307 307 HOH HOH . 
C 3 HOH A 76 308 308 HOH HOH . 
C 3 HOH A 77 309 309 HOH HOH . 
C 3 HOH A 78 310 310 HOH HOH . 
C 3 HOH A 79 311 311 HOH HOH . 
C 3 HOH A 80 312 312 HOH HOH . 
C 3 HOH A 81 313 313 HOH HOH . 
C 3 HOH A 82 314 314 HOH HOH . 
C 3 HOH A 83 315 315 HOH HOH . 
C 3 HOH A 84 316 316 HOH HOH . 
C 3 HOH A 85 317 317 HOH HOH . 
C 3 HOH A 86 318 318 HOH HOH . 
C 3 HOH A 87 319 319 HOH HOH . 
C 3 HOH A 88 320 320 HOH HOH . 
C 3 HOH A 89 321 321 HOH HOH . 
C 3 HOH A 90 322 322 HOH HOH . 
C 3 HOH A 91 323 323 HOH HOH . 
C 3 HOH A 92 324 324 HOH HOH . 
C 3 HOH A 93 325 325 HOH HOH . 
C 3 HOH A 94 326 326 HOH HOH . 
C 3 HOH A 95 327 327 HOH HOH . 
C 3 HOH A 96 328 328 HOH HOH . 
C 3 HOH A 97 329 329 HOH HOH . 
C 3 HOH A 98 330 330 HOH HOH . 
C 3 HOH A 99 331 331 HOH HOH . 
C 3 HOH A 100 332 332 HOH HOH . 
C 3 HOH A 101 333 333 HOH HOH . 
C 3 HOH A 102 334 334 HOH HOH . 
C 3 HOH A 103 335 335 HOH HOH . 
C 3 HOH A 104 336 336 HOH HOH . 
C 3 HOH A 105 337 337 HOH HOH . 
C 3 HOH A 106 338 338 HOH HOH . 
C 3 HOH A 107 339 339 HOH HOH . 
C 3 HOH A 108 340 340 HOH HOH . 
C 3 HOH A 109 341 341 HOH HOH . 
C 3 HOH A 110 342 342 HOH HOH . 
C 3 HOH A 111 343 343 HOH HOH . 
C 3 HOH A 112 344 344 HOH HOH . 
C 3 HOH A 113 345 345 HOH HOH . 
C 3 HOH A 114 346 346 HOH HOH . 
C 3 HOH A 115 347 347 HOH HOH . 
C 3 HOH A 116 348 348 HOH HOH . 
C 3 HOH A 117 349 349 HOH HOH . 
C 3 HOH A 118 350 350 HOH HOH . 
C 3 HOH A 119 351 351 HOH HOH . 
C 3 HOH A 120 352 352 HOH HOH . 
C 3 HOH A 121 353 353 HOH HOH . 
C 3 HOH A 122 354 354 HOH HOH . 
C 3 HOH A 123 355 355 HOH HOH . 
C 3 HOH A 124 356 356 HOH HOH . 
C 3 HOH A 125 357 357 HOH HOH . 
C 3 HOH A 126 358 358 HOH HOH . 
C 3 HOH A 127 359 359 HOH HOH . 
C 3 HOH A 128 360 360 HOH HOH . 
C 3 HOH A 129 361 361 HOH HOH . 
C 3 HOH A 130 362 362 HOH HOH . 
C 3 HOH A 131 363 363 HOH HOH . 
C 3 HOH A 132 364 364 HOH HOH . 
C 3 HOH A 133 365 365 HOH HOH . 
C 3 HOH A 134 366 366 HOH HOH . 
C 3 HOH A 135 367 367 HOH HOH . 
C 3 HOH A 136 368 368 HOH HOH . 
C 3 HOH A 137 369 369 HOH HOH . 
C 3 HOH A 138 370 370 HOH HOH . 
C 3 HOH A 139 371 371 HOH HOH . 
C 3 HOH A 140 372 372 HOH HOH . 
C 3 HOH A 141 373 373 HOH HOH . 
C 3 HOH A 142 374 374 HOH HOH . 
C 3 HOH A 143 375 375 HOH HOH . 
C 3 HOH A 144 376 376 HOH HOH . 
C 3 HOH A 145 377 377 HOH HOH . 
C 3 HOH A 146 378 378 HOH HOH . 
C 3 HOH A 147 379 379 HOH HOH . 
C 3 HOH A 148 380 380 HOH HOH . 
C 3 HOH A 149 381 381 HOH HOH . 
C 3 HOH A 150 382 382 HOH HOH . 
C 3 HOH A 151 383 383 HOH HOH . 
C 3 HOH A 152 384 384 HOH HOH . 
C 3 HOH A 153 385 385 HOH HOH . 
C 3 HOH A 154 386 386 HOH HOH . 
C 3 HOH A 155 387 387 HOH HOH . 
C 3 HOH A 156 388 388 HOH HOH . 
C 3 HOH A 157 389 389 HOH HOH . 
C 3 HOH A 158 390 390 HOH HOH . 
C 3 HOH A 159 391 391 HOH HOH . 
C 3 HOH A 160 392 392 HOH HOH . 
C 3 HOH A 161 393 393 HOH HOH . 
C 3 HOH A 162 394 394 HOH HOH . 
C 3 HOH A 163 395 395 HOH HOH . 
C 3 HOH A 164 396 396 HOH HOH . 
C 3 HOH A 165 397 397 HOH HOH . 
C 3 HOH A 166 398 398 HOH HOH . 
C 3 HOH A 167 399 399 HOH HOH . 
C 3 HOH A 168 400 400 HOH HOH . 
C 3 HOH A 169 401 401 HOH HOH . 
C 3 HOH A 170 402 402 HOH HOH . 
C 3 HOH A 171 403 403 HOH HOH . 
C 3 HOH A 172 404 404 HOH HOH . 
C 3 HOH A 173 405 405 HOH HOH . 
C 3 HOH A 174 406 406 HOH HOH . 
C 3 HOH A 175 407 407 HOH HOH . 
C 3 HOH A 176 408 408 HOH HOH . 
C 3 HOH A 177 409 409 HOH HOH . 
C 3 HOH A 178 410 410 HOH HOH . 
C 3 HOH A 179 411 411 HOH HOH . 
C 3 HOH A 180 412 412 HOH HOH . 
C 3 HOH A 181 413 413 HOH HOH . 
C 3 HOH A 182 414 414 HOH HOH . 
C 3 HOH A 183 415 415 HOH HOH . 
C 3 HOH A 184 416 416 HOH HOH . 
C 3 HOH A 185 417 417 HOH HOH . 
C 3 HOH A 186 418 418 HOH HOH . 
C 3 HOH A 187 419 419 HOH HOH . 
C 3 HOH A 188 420 420 HOH HOH . 
C 3 HOH A 189 421 421 HOH HOH . 
C 3 HOH A 190 422 422 HOH HOH . 
C 3 HOH A 191 423 423 HOH HOH . 
C 3 HOH A 192 424 424 HOH HOH . 
C 3 HOH A 193 425 425 HOH HOH . 
C 3 HOH A 194 426 426 HOH HOH . 
C 3 HOH A 195 427 427 HOH HOH . 
C 3 HOH A 196 428 428 HOH HOH . 
C 3 HOH A 197 429 429 HOH HOH . 
C 3 HOH A 198 430 430 HOH HOH . 
C 3 HOH A 199 431 431 HOH HOH . 
C 3 HOH A 200 432 432 HOH HOH . 
C 3 HOH A 201 433 433 HOH HOH . 
C 3 HOH A 202 434 434 HOH HOH . 
C 3 HOH A 203 435 435 HOH HOH . 
C 3 HOH A 204 436 436 HOH HOH . 
C 3 HOH A 205 437 437 HOH HOH . 
C 3 HOH A 206 438 438 HOH HOH . 
C 3 HOH A 207 439 439 HOH HOH . 
C 3 HOH A 208 440 440 HOH HOH . 
C 3 HOH A 209 441 441 HOH HOH . 
C 3 HOH A 210 442 442 HOH HOH . 
C 3 HOH A 211 443 443 HOH HOH . 
C 3 HOH A 212 444 444 HOH HOH . 
C 3 HOH A 213 445 445 HOH HOH . 
C 3 HOH A 214 446 446 HOH HOH . 
C 3 HOH A 215 447 447 HOH HOH . 
C 3 HOH A 216 448 448 HOH HOH . 
C 3 HOH A 217 449 449 HOH HOH . 
C 3 HOH A 218 450 450 HOH HOH . 
C 3 HOH A 219 451 451 HOH HOH . 
C 3 HOH A 220 452 452 HOH HOH . 
C 3 HOH A 221 453 453 HOH HOH . 
C 3 HOH A 222 454 454 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 URA . . . B 2 51.57 7.456 -0.462 1 38.54 ? N1 URA 232 A 1 
HETATM 2 C C2 URA . . . B 2 50.703 8.56 -0.472 1 38.9 ? C2 URA 232 A 1 
HETATM 3 O O2 URA . . . B 2 49.866 8.842 0.4 1 39.58 ? O2 URA 232 A 1 
HETATM 4 N N3 URA . . . B 2 50.865 9.348 -1.594 1 38.44 ? N3 URA 232 A 1 
HETATM 5 C C4 URA . . . B 2 51.752 9.188 -2.669 1 38.81 ? C4 URA 232 A 1 
HETATM 6 O O4 URA . . . B 2 51.752 10.011 -3.606 1 37.17 ? O4 URA 232 A 1 
HETATM 7 C C5 URA . . . B 2 52.628 8.019 -2.596 1 38.27 ? C5 URA 232 A 1 
HETATM 8 C C6 URA . . . B 2 52.503 7.204 -1.491 1 38.37 ? C6 URA 232 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#