data_1KSN # _model_server_result.job_id 0mSw8oZjS7bcEDeG0AD4tw _model_server_result.datetime_utc '2024-12-21 16:49:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ksn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1KSN # _exptl.entry_id 1KSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.506 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "METHYL-3-(4'-N-OXOPYRIDYLPHENOYL)-3-METHYL-2-(M-AMIDINOBENZYL)-PROPIONATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KSN _cell.length_a 55.81 _cell.length_b 71.6 _cell.length_c 79.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 127 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 84 B CYS 1 1_555 B SG CYS 95 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 91 B CYS 8 1_555 B SG CYS 104 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 B SG CYS 106 B CYS 23 1_555 B SG CYS 119 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc5 C CA CA . A CA 301 1_555 E O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? # _chem_comp.formula 'C25 H27 N4 O4 1' _chem_comp.formula_weight 447.506 _chem_comp.id FXV _chem_comp.mon_nstd_flag . _chem_comp.name "METHYL-3-(4'-N-OXOPYRIDYLPHENOYL)-3-METHYL-2-(M-AMIDINOBENZYL)-PROPIONATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FXV673 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FXV doub 83 n y C1 C6 FXV sing 84 n y C1 H1 FXV sing 85 n n C2 C3 FXV sing 86 n y C2 C11 FXV sing 87 n y C3 C4 FXV doub 88 n y C3 H3 FXV sing 89 n n C4 N1 FXV sing 90 n y C4 H4 FXV sing 91 n n N1 C6 FXV doub 92 n y N1 O1 FXV sing 93 n n C6 H6 FXV sing 94 n n C7 C8 FXV doub 95 n y C7 C12 FXV sing 96 n y C7 H7 FXV sing 97 n n C8 C9 FXV sing 98 n y C8 C13 FXV sing 99 n n C9 C10 FXV doub 100 n y C9 H9 FXV sing 101 n n C10 C11 FXV sing 102 n y C10 H10 FXV sing 103 n n C11 C12 FXV doub 104 n y C12 H12 FXV sing 105 n n C13 N14 FXV sing 106 n n C13 O33 FXV doub 107 n n N14 C15 FXV sing 108 n n N14 H14 FXV sing 109 n n C15 C16 FXV sing 110 n n C15 C17 FXV sing 111 n n C15 H15 FXV sing 112 n n C16 H161 FXV sing 113 n n C16 H162 FXV sing 114 n n C16 H163 FXV sing 115 n n C17 C18 FXV sing 116 n n C17 C20 FXV sing 117 n n C17 H17 FXV sing 118 n n C18 O19 FXV sing 119 n n C18 O32 FXV doub 120 n n O19 C34 FXV sing 121 n n C20 C28 FXV sing 122 n n C20 H201 FXV sing 123 n n C20 H202 FXV sing 124 n n C23 C24 FXV doub 125 n y C23 C28 FXV sing 126 n y C23 H23 FXV sing 127 n n C24 C25 FXV sing 128 n y C24 C29 FXV sing 129 n n C25 C26 FXV doub 130 n y C25 H25 FXV sing 131 n n C26 C27 FXV sing 132 n y C26 H26 FXV sing 133 n n C27 C28 FXV doub 134 n y C27 H27 FXV sing 135 n n C29 N30 FXV sing 136 n n C29 N31 FXV doub 137 n n N30 H301 FXV sing 138 n n N30 H302 FXV sing 139 n n N31 H311 FXV sing 140 n n N31 H312 FXV sing 141 n n C34 H341 FXV sing 142 n n C34 H342 FXV sing 143 n n C34 H343 FXV sing 144 n n # _atom_sites.entry_id 1KSN _atom_sites.fract_transf_matrix[1][1] 0.01792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1 CA CA2 . D 4 FXV A 1 401 1 FXV RPR . E 5 HOH A 1 402 2 HOH HOH . E 5 HOH A 2 403 3 HOH HOH . E 5 HOH A 3 404 4 HOH HOH . E 5 HOH A 4 405 5 HOH HOH . E 5 HOH A 5 406 6 HOH HOH . E 5 HOH A 6 407 7 HOH HOH . E 5 HOH A 7 408 8 HOH HOH . E 5 HOH A 8 409 9 HOH HOH . E 5 HOH A 9 410 10 HOH HOH . E 5 HOH A 10 411 11 HOH HOH . E 5 HOH A 11 412 12 HOH HOH . E 5 HOH A 12 413 13 HOH HOH . E 5 HOH A 13 414 14 HOH HOH . E 5 HOH A 14 415 15 HOH HOH . E 5 HOH A 15 416 16 HOH HOH . E 5 HOH A 16 417 17 HOH HOH . E 5 HOH A 17 418 19 HOH HOH . E 5 HOH A 18 419 20 HOH HOH . E 5 HOH A 19 420 21 HOH HOH . E 5 HOH A 20 421 22 HOH HOH . E 5 HOH A 21 422 23 HOH HOH . E 5 HOH A 22 423 25 HOH HOH . E 5 HOH A 23 424 26 HOH HOH . E 5 HOH A 24 425 29 HOH HOH . E 5 HOH A 25 426 30 HOH HOH . E 5 HOH A 26 427 31 HOH HOH . E 5 HOH A 27 428 32 HOH HOH . E 5 HOH A 28 429 33 HOH HOH . E 5 HOH A 29 430 34 HOH HOH . E 5 HOH A 30 431 35 HOH HOH . E 5 HOH A 31 432 36 HOH HOH . E 5 HOH A 32 433 37 HOH HOH . E 5 HOH A 33 434 38 HOH HOH . E 5 HOH A 34 435 39 HOH HOH . E 5 HOH A 35 436 40 HOH HOH . E 5 HOH A 36 437 41 HOH HOH . E 5 HOH A 37 438 43 HOH HOH . E 5 HOH A 38 439 44 HOH HOH . E 5 HOH A 39 440 45 HOH HOH . E 5 HOH A 40 441 46 HOH HOH . E 5 HOH A 41 442 47 HOH HOH . E 5 HOH A 42 443 49 HOH HOH . E 5 HOH A 43 444 51 HOH HOH . E 5 HOH A 44 445 52 HOH HOH . E 5 HOH A 45 446 53 HOH HOH . E 5 HOH A 46 447 56 HOH HOH . E 5 HOH A 47 448 58 HOH HOH . E 5 HOH A 48 449 59 HOH HOH . E 5 HOH A 49 450 60 HOH HOH . E 5 HOH A 50 451 61 HOH HOH . E 5 HOH A 51 452 62 HOH HOH . E 5 HOH A 52 453 63 HOH HOH . E 5 HOH A 53 454 64 HOH HOH . E 5 HOH A 54 455 66 HOH HOH . E 5 HOH A 55 456 67 HOH HOH . E 5 HOH A 56 457 70 HOH HOH . E 5 HOH A 57 458 71 HOH HOH . E 5 HOH A 58 459 72 HOH HOH . E 5 HOH A 59 460 73 HOH HOH . E 5 HOH A 60 461 74 HOH HOH . E 5 HOH A 61 462 75 HOH HOH . E 5 HOH A 62 463 76 HOH HOH . E 5 HOH A 63 464 78 HOH HOH . E 5 HOH A 64 465 79 HOH HOH . E 5 HOH A 65 466 80 HOH HOH . E 5 HOH A 66 467 82 HOH HOH . E 5 HOH A 67 468 83 HOH HOH . E 5 HOH A 68 469 84 HOH HOH . E 5 HOH A 69 470 85 HOH HOH . E 5 HOH A 70 471 86 HOH HOH . E 5 HOH A 71 472 87 HOH HOH . E 5 HOH A 72 473 88 HOH HOH . E 5 HOH A 73 474 89 HOH HOH . E 5 HOH A 74 475 90 HOH HOH . E 5 HOH A 75 476 91 HOH HOH . E 5 HOH A 76 477 94 HOH HOH . E 5 HOH A 77 478 96 HOH HOH . E 5 HOH A 78 479 97 HOH HOH . E 5 HOH A 79 480 98 HOH HOH . E 5 HOH A 80 481 100 HOH HOH . E 5 HOH A 81 482 101 HOH HOH . E 5 HOH A 82 483 102 HOH HOH . E 5 HOH A 83 484 103 HOH HOH . E 5 HOH A 84 485 105 HOH HOH . E 5 HOH A 85 486 106 HOH HOH . E 5 HOH A 86 487 107 HOH HOH . E 5 HOH A 87 488 109 HOH HOH . E 5 HOH A 88 489 110 HOH HOH . E 5 HOH A 89 490 111 HOH HOH . E 5 HOH A 90 491 113 HOH HOH . E 5 HOH A 91 492 114 HOH HOH . E 5 HOH A 92 493 115 HOH HOH . E 5 HOH A 93 494 116 HOH HOH . E 5 HOH A 94 495 117 HOH HOH . E 5 HOH A 95 496 119 HOH HOH . E 5 HOH A 96 497 121 HOH HOH . E 5 HOH A 97 498 123 HOH HOH . E 5 HOH A 98 499 125 HOH HOH . E 5 HOH A 99 500 126 HOH HOH . E 5 HOH A 100 501 128 HOH HOH . E 5 HOH A 101 502 129 HOH HOH . E 5 HOH A 102 503 130 HOH HOH . E 5 HOH A 103 504 132 HOH HOH . E 5 HOH A 104 505 133 HOH HOH . E 5 HOH A 105 506 135 HOH HOH . E 5 HOH A 106 507 136 HOH HOH . F 5 HOH B 1 52 18 HOH HOH . F 5 HOH B 2 53 24 HOH HOH . F 5 HOH B 3 54 27 HOH HOH . F 5 HOH B 4 55 28 HOH HOH . F 5 HOH B 5 56 42 HOH HOH . F 5 HOH B 6 57 48 HOH HOH . F 5 HOH B 7 58 50 HOH HOH . F 5 HOH B 8 59 54 HOH HOH . F 5 HOH B 9 60 55 HOH HOH . F 5 HOH B 10 61 57 HOH HOH . F 5 HOH B 11 62 65 HOH HOH . F 5 HOH B 12 63 68 HOH HOH . F 5 HOH B 13 64 69 HOH HOH . F 5 HOH B 14 65 77 HOH HOH . F 5 HOH B 15 66 81 HOH HOH . F 5 HOH B 16 67 92 HOH HOH . F 5 HOH B 17 68 93 HOH HOH . F 5 HOH B 18 69 95 HOH HOH . F 5 HOH B 19 70 99 HOH HOH . F 5 HOH B 20 71 104 HOH HOH . F 5 HOH B 21 72 108 HOH HOH . F 5 HOH B 22 73 112 HOH HOH . F 5 HOH B 23 74 118 HOH HOH . F 5 HOH B 24 75 120 HOH HOH . F 5 HOH B 25 76 122 HOH HOH . F 5 HOH B 26 77 124 HOH HOH . F 5 HOH B 27 78 127 HOH HOH . F 5 HOH B 28 79 131 HOH HOH . F 5 HOH B 29 80 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FXV . . . D 4 6.643 0.247 17.881 1 36.59 ? C1 FXV 401 A 1 HETATM 2 C C2 FXV . . . D 4 7.375 0.876 18.942 1 38.25 ? C2 FXV 401 A 1 HETATM 3 C C3 FXV . . . D 4 8.78 0.574 19.064 1 41.91 ? C3 FXV 401 A 1 HETATM 4 C C4 FXV . . . D 4 9.406 -0.331 18.145 1 42.09 ? C4 FXV 401 A 1 HETATM 5 N N1 FXV . . . D 4 8.694 -0.928 17.134 1 45.76 ? N1 FXV 401 A 1 HETATM 6 C C6 FXV . . . D 4 7.337 -0.642 17.007 1 42.03 ? C6 FXV 401 A 1 HETATM 7 C C7 FXV . . . D 4 6.74 3.933 21.257 1 39.89 ? C7 FXV 401 A 1 HETATM 8 C C8 FXV . . . D 4 5.363 3.697 21.685 1 41.7 ? C8 FXV 401 A 1 HETATM 9 C C9 FXV . . . D 4 4.693 2.519 21.194 1 45.36 ? C9 FXV 401 A 1 HETATM 10 C C10 FXV . . . D 4 5.345 1.604 20.314 1 41.02 ? C10 FXV 401 A 1 HETATM 11 C C11 FXV . . . D 4 6.695 1.825 19.882 1 37.95 ? C11 FXV 401 A 1 HETATM 12 C C12 FXV . . . D 4 7.37 2.997 20.37 1 37.02 ? C12 FXV 401 A 1 HETATM 13 C C13 FXV . . . D 4 4.622 4.593 22.566 1 41.97 ? C13 FXV 401 A 1 HETATM 14 N N14 FXV . . . D 4 5.099 5.852 22.616 1 42.14 ? N14 FXV 401 A 1 HETATM 15 C C15 FXV . . . D 4 4.484 6.899 23.392 1 40.77 ? C15 FXV 401 A 1 HETATM 16 C C16 FXV . . . D 4 3.806 7.874 22.405 1 45.08 ? C16 FXV 401 A 1 HETATM 17 C C17 FXV . . . D 4 5.589 7.556 24.301 1 42.56 ? C17 FXV 401 A 1 HETATM 18 C C18 FXV . . . D 4 4.964 8.689 25.136 1 43.81 ? C18 FXV 401 A 1 HETATM 19 O O19 FXV . . . D 4 3.86 8.264 25.808 1 45.98 ? O19 FXV 401 A 1 HETATM 20 C C20 FXV . . . D 4 6.861 8.077 23.491 1 33.69 ? C20 FXV 401 A 1 HETATM 21 C C23 FXV . . . D 4 8.484 7.469 25.477 1 30.63 ? C23 FXV 401 A 1 HETATM 22 C C24 FXV . . . D 4 9.717 7.699 26.228 1 27.59 ? C24 FXV 401 A 1 HETATM 23 C C25 FXV . . . D 4 10.609 8.759 25.789 1 25.83 ? C25 FXV 401 A 1 HETATM 24 C C26 FXV . . . D 4 10.287 9.557 24.645 1 21.52 ? C26 FXV 401 A 1 HETATM 25 C C27 FXV . . . D 4 9.069 9.322 23.913 1 29.5 ? C27 FXV 401 A 1 HETATM 26 C C28 FXV . . . D 4 8.148 8.281 24.306 1 32.34 ? C28 FXV 401 A 1 HETATM 27 C C29 FXV . . . D 4 10.058 6.889 27.4 1 23.14 ? C29 FXV 401 A 1 HETATM 28 N N30 FXV . . . D 4 11.321 6.749 27.813 1 27.97 ? N30 FXV 401 A 1 HETATM 29 N N31 FXV . . . D 4 9.074 6.275 28.081 1 29.79 ? N31 FXV 401 A 1 HETATM 30 O O32 FXV . . . D 4 5.39 9.791 25.172 1 48.57 ? O32 FXV 401 A 1 HETATM 31 O O33 FXV . . . D 4 3.616 4.231 23.205 1 47.23 ? O33 FXV 401 A 1 HETATM 32 C C34 FXV . . . D 4 3.095 9.132 26.648 1 47.93 ? C34 FXV 401 A 1 HETATM 33 O O1 FXV . . . D 4 9.287 -1.789 16.26 1 49.39 ? O1 FXV 401 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1256 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #