data_1KSZ
#
_model_server_result.job_id            hrtHvLcFDmtO5xuRl2E7Zw 
_model_server_result.datetime_utc      '2024-11-18 04:27:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ksz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":437}' 
#
_entry.id    1KSZ 
#
_exptl.entry_id    1KSZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              119.076 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HADACIDIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1KSZ 
_cell.length_a            81.63 
_cell.length_b            81.63 
_cell.length_c            159.22 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KSZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 106.146667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 13 A ASP 13 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc2 A O GLY 40 A GLY 40 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc3 C O1B GDP . A GDP 432 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc4 C O2A GDP . A GDP 432 1_555 B MG MG . A MG 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc5 B MG MG . A MG 435 1_555 D O HDA . A HDA 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc6 B MG MG . A MG 435 1_555 E O3P PGS . A PGS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
#
_chem_comp.formula           'C3 H5 N O4' 
_chem_comp.formula_weight    119.076 
_chem_comp.id                HDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HADACIDIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NA C HDA sing 174 n n 
NA OB HDA sing 175 n n 
NA CB HDA sing 176 n n 
C O HDA doub 177 n n 
C HC HDA sing 178 n n 
OB HOB HDA sing 179 n n 
CB CG HDA sing 180 n n 
CB HB1 HDA sing 181 n n 
CB HB2 HDA sing 182 n n 
CG OD1 HDA doub 183 n n 
CG OD2 HDA sing 184 n n 
OD2 HOD HDA sing 185 n n 
#
_atom_sites.entry_id                     1KSZ 
_atom_sites.fract_transf_matrix[1][1]    0.01225 
_atom_sites.fract_transf_matrix[1][2]    0.007073 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014146 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 435 435 MG MG . 
C 3 GDP A 1 432 432 GDP GDP . 
D 4 HDA A 1 437 437 HDA HDA . 
E 5 PGS A 1 440 440 PGS PGS . 
F 6 HOH A 1 500 500 HOH HOH . 
F 6 HOH A 2 501 501 HOH HOH . 
F 6 HOH A 3 502 502 HOH HOH . 
F 6 HOH A 4 503 503 HOH HOH . 
F 6 HOH A 5 504 504 HOH HOH . 
F 6 HOH A 6 505 505 HOH HOH . 
F 6 HOH A 7 506 506 HOH HOH . 
F 6 HOH A 8 507 507 HOH HOH . 
F 6 HOH A 9 508 508 HOH HOH . 
F 6 HOH A 10 509 509 HOH HOH . 
F 6 HOH A 11 510 510 HOH HOH . 
F 6 HOH A 12 511 511 HOH HOH . 
F 6 HOH A 13 512 512 HOH HOH . 
F 6 HOH A 14 513 513 HOH HOH . 
F 6 HOH A 15 514 514 HOH HOH . 
F 6 HOH A 16 515 515 HOH HOH . 
F 6 HOH A 17 516 516 HOH HOH . 
F 6 HOH A 18 517 517 HOH HOH . 
F 6 HOH A 19 518 518 HOH HOH . 
F 6 HOH A 20 519 519 HOH HOH . 
F 6 HOH A 21 520 520 HOH HOH . 
F 6 HOH A 22 521 521 HOH HOH . 
F 6 HOH A 23 522 522 HOH HOH . 
F 6 HOH A 24 523 523 HOH HOH . 
F 6 HOH A 25 524 524 HOH HOH . 
F 6 HOH A 26 525 525 HOH HOH . 
F 6 HOH A 27 526 526 HOH HOH . 
F 6 HOH A 28 527 527 HOH HOH . 
F 6 HOH A 29 528 528 HOH HOH . 
F 6 HOH A 30 529 529 HOH HOH . 
F 6 HOH A 31 530 530 HOH HOH . 
F 6 HOH A 32 531 531 HOH HOH . 
F 6 HOH A 33 532 532 HOH HOH . 
F 6 HOH A 34 533 533 HOH HOH . 
F 6 HOH A 35 534 534 HOH HOH . 
F 6 HOH A 36 535 535 HOH HOH . 
F 6 HOH A 37 536 536 HOH HOH . 
F 6 HOH A 38 537 537 HOH HOH . 
F 6 HOH A 39 538 538 HOH HOH . 
F 6 HOH A 40 539 539 HOH HOH . 
F 6 HOH A 41 540 540 HOH HOH . 
F 6 HOH A 42 541 541 HOH HOH . 
F 6 HOH A 43 542 542 HOH HOH . 
F 6 HOH A 44 543 543 HOH HOH . 
F 6 HOH A 45 544 544 HOH HOH . 
F 6 HOH A 46 545 545 HOH HOH . 
F 6 HOH A 47 546 546 HOH HOH . 
F 6 HOH A 48 547 547 HOH HOH . 
F 6 HOH A 49 548 548 HOH HOH . 
F 6 HOH A 50 549 549 HOH HOH . 
F 6 HOH A 51 550 550 HOH HOH . 
F 6 HOH A 52 551 551 HOH HOH . 
F 6 HOH A 53 552 552 HOH HOH . 
F 6 HOH A 54 553 553 HOH HOH . 
F 6 HOH A 55 554 554 HOH HOH . 
F 6 HOH A 56 555 555 HOH HOH . 
F 6 HOH A 57 556 556 HOH HOH . 
F 6 HOH A 58 557 557 HOH HOH . 
F 6 HOH A 59 558 558 HOH HOH . 
F 6 HOH A 60 559 559 HOH HOH . 
F 6 HOH A 61 560 560 HOH HOH . 
F 6 HOH A 62 561 561 HOH HOH . 
F 6 HOH A 63 562 562 HOH HOH . 
F 6 HOH A 64 563 563 HOH HOH . 
F 6 HOH A 65 564 564 HOH HOH . 
F 6 HOH A 66 565 565 HOH HOH . 
F 6 HOH A 67 566 566 HOH HOH . 
F 6 HOH A 68 567 567 HOH HOH . 
F 6 HOH A 69 568 568 HOH HOH . 
F 6 HOH A 70 569 569 HOH HOH . 
F 6 HOH A 71 570 570 HOH HOH . 
F 6 HOH A 72 571 571 HOH HOH . 
F 6 HOH A 73 572 572 HOH HOH . 
F 6 HOH A 74 573 573 HOH HOH . 
F 6 HOH A 75 574 574 HOH HOH . 
F 6 HOH A 76 575 575 HOH HOH . 
F 6 HOH A 77 576 576 HOH HOH . 
F 6 HOH A 78 577 577 HOH HOH . 
F 6 HOH A 79 578 578 HOH HOH . 
F 6 HOH A 80 579 579 HOH HOH . 
F 6 HOH A 81 580 580 HOH HOH . 
F 6 HOH A 82 581 581 HOH HOH . 
F 6 HOH A 83 582 582 HOH HOH . 
F 6 HOH A 84 583 583 HOH HOH . 
F 6 HOH A 85 584 584 HOH HOH . 
F 6 HOH A 86 585 585 HOH HOH . 
F 6 HOH A 87 586 586 HOH HOH . 
F 6 HOH A 88 587 587 HOH HOH . 
F 6 HOH A 89 588 588 HOH HOH . 
F 6 HOH A 90 589 589 HOH HOH . 
F 6 HOH A 91 590 590 HOH HOH . 
F 6 HOH A 92 591 591 HOH HOH . 
F 6 HOH A 93 592 592 HOH HOH . 
F 6 HOH A 94 593 593 HOH HOH . 
F 6 HOH A 95 594 594 HOH HOH . 
F 6 HOH A 96 595 595 HOH HOH . 
F 6 HOH A 97 596 596 HOH HOH . 
F 6 HOH A 98 597 597 HOH HOH . 
F 6 HOH A 99 598 598 HOH HOH . 
F 6 HOH A 100 599 599 HOH HOH . 
F 6 HOH A 101 600 600 HOH HOH . 
F 6 HOH A 102 601 601 HOH HOH . 
F 6 HOH A 103 602 602 HOH HOH . 
F 6 HOH A 104 603 603 HOH HOH . 
F 6 HOH A 105 604 604 HOH HOH . 
F 6 HOH A 106 605 605 HOH HOH . 
F 6 HOH A 107 606 606 HOH HOH . 
F 6 HOH A 108 607 607 HOH HOH . 
F 6 HOH A 109 608 608 HOH HOH . 
F 6 HOH A 110 609 609 HOH HOH . 
F 6 HOH A 111 610 610 HOH HOH . 
F 6 HOH A 112 611 611 HOH HOH . 
F 6 HOH A 113 612 612 HOH HOH . 
F 6 HOH A 114 613 613 HOH HOH . 
F 6 HOH A 115 614 614 HOH HOH . 
F 6 HOH A 116 615 615 HOH HOH . 
F 6 HOH A 117 616 616 HOH HOH . 
F 6 HOH A 118 617 617 HOH HOH . 
F 6 HOH A 119 618 618 HOH HOH . 
F 6 HOH A 120 619 619 HOH HOH . 
F 6 HOH A 121 620 620 HOH HOH . 
F 6 HOH A 122 621 621 HOH HOH . 
F 6 HOH A 123 622 622 HOH HOH . 
F 6 HOH A 124 623 623 HOH HOH . 
F 6 HOH A 125 624 624 HOH HOH . 
F 6 HOH A 126 625 625 HOH HOH . 
F 6 HOH A 127 626 626 HOH HOH . 
F 6 HOH A 128 627 627 HOH HOH . 
F 6 HOH A 129 628 628 HOH HOH . 
F 6 HOH A 130 629 629 HOH HOH . 
F 6 HOH A 131 630 630 HOH HOH . 
F 6 HOH A 132 631 631 HOH HOH . 
F 6 HOH A 133 632 632 HOH HOH . 
F 6 HOH A 134 633 633 HOH HOH . 
F 6 HOH A 135 634 634 HOH HOH . 
F 6 HOH A 136 635 635 HOH HOH . 
F 6 HOH A 137 636 636 HOH HOH . 
F 6 HOH A 138 637 637 HOH HOH . 
F 6 HOH A 139 638 638 HOH HOH . 
F 6 HOH A 140 639 639 HOH HOH . 
F 6 HOH A 141 640 640 HOH HOH . 
F 6 HOH A 142 641 641 HOH HOH . 
F 6 HOH A 143 642 642 HOH HOH . 
F 6 HOH A 144 643 643 HOH HOH . 
F 6 HOH A 145 644 644 HOH HOH . 
F 6 HOH A 146 645 645 HOH HOH . 
F 6 HOH A 147 646 646 HOH HOH . 
F 6 HOH A 148 647 647 HOH HOH . 
F 6 HOH A 149 648 648 HOH HOH . 
F 6 HOH A 150 649 649 HOH HOH . 
F 6 HOH A 151 650 650 HOH HOH . 
F 6 HOH A 152 651 651 HOH HOH . 
F 6 HOH A 153 652 652 HOH HOH . 
F 6 HOH A 154 653 653 HOH HOH . 
F 6 HOH A 155 654 654 HOH HOH . 
F 6 HOH A 156 655 655 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NA HDA . . . D 4 -7.829 54.165 46.382 1 30.97 ? NA HDA 437 A 1 
HETATM 2 C C HDA . . . D 4 -7.794 52.827 45.915 1 30.81 ? C HDA 437 A 1 
HETATM 3 O O HDA . . . D 4 -6.819 52.404 45.357 1 30.71 ? O HDA 437 A 1 
HETATM 4 O OB HDA . . . D 4 -6.966 54.493 47.445 1 31.05 ? OB HDA 437 A 1 
HETATM 5 C CB HDA . . . D 4 -9.15 54.804 46.513 1 31.21 ? CB HDA 437 A 1 
HETATM 6 C CG HDA . . . D 4 -9.057 56.313 46.547 1 31.37 ? CG HDA 437 A 1 
HETATM 7 O OD1 HDA . . . D 4 -7.987 56.898 46.328 1 31.45 ? OD1 HDA 437 A 1 
HETATM 8 O OD2 HDA . . . D 4 -10.084 56.948 46.791 1 31.93 ? OD2 HDA 437 A 1 
HETATM 9 H HOB HDA . . . D 4 -6.478 53.722 47.787 1 0 ? HOB HDA 437 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#