data_1KT5 # _model_server_result.job_id AVplvNamQU0WBSn7HgDuOA _model_server_result.datetime_utc '2024-11-04 22:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":176}' # _entry.id 1KT5 # _exptl.entry_id 1KT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.452 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KT5 _cell.length_a 45.293 _cell.length_b 48.769 _cell.length_c 74.613 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf3 A SG CYS 120 A CYS 120 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C20 H30 O' _chem_comp.formula_weight 286.452 _chem_comp.id RTL _chem_comp.mon_nstd_flag . _chem_comp.name RETINOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RTL sing 277 n n C1 C6 RTL sing 278 n n C1 C16 RTL sing 279 n n C1 C17 RTL sing 280 n n C2 C3 RTL sing 281 n n C2 H21 RTL sing 282 n n C2 H22 RTL sing 283 n n C3 C4 RTL sing 284 n n C3 H31 RTL sing 285 n n C3 H32 RTL sing 286 n n C4 C5 RTL sing 287 n n C4 H41 RTL sing 288 n n C4 H42 RTL sing 289 n n C5 C6 RTL doub 290 n n C5 C18 RTL sing 291 n n C6 C7 RTL sing 292 n n C7 C8 RTL doub 293 e n C7 H7 RTL sing 294 n n C8 C9 RTL sing 295 n n C8 H8 RTL sing 296 n n C9 C10 RTL doub 297 e n C9 C19 RTL sing 298 n n C10 C11 RTL sing 299 n n C10 H10 RTL sing 300 n n C11 C12 RTL doub 301 e n C11 H11 RTL sing 302 n n C12 C13 RTL sing 303 n n C12 H12 RTL sing 304 n n C13 C14 RTL doub 305 e n C13 C20 RTL sing 306 n n C14 C15 RTL sing 307 n n C14 H14 RTL sing 308 n n C15 O1 RTL sing 309 n n C15 H151 RTL sing 310 n n C15 H152 RTL sing 311 n n O1 HO1 RTL sing 312 n n C16 H161 RTL sing 313 n n C16 H162 RTL sing 314 n n C16 H163 RTL sing 315 n n C17 H171 RTL sing 316 n n C17 H172 RTL sing 317 n n C17 H173 RTL sing 318 n n C18 H181 RTL sing 319 n n C18 H182 RTL sing 320 n n C18 H183 RTL sing 321 n n C19 H191 RTL sing 322 n n C19 H192 RTL sing 323 n n C19 H193 RTL sing 324 n n C20 H201 RTL sing 325 n n C20 H202 RTL sing 326 n n C20 H203 RTL sing 327 n n # _atom_sites.entry_id 1KT5 _atom_sites.fract_transf_matrix[1][1] 0.022078 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RTL A 1 176 176 RTL RET . C 3 HOH A 1 177 177 HOH HOH . C 3 HOH A 2 178 178 HOH HOH . C 3 HOH A 3 179 179 HOH HOH . C 3 HOH A 4 180 180 HOH HOH . C 3 HOH A 5 181 181 HOH HOH . C 3 HOH A 6 182 182 HOH HOH . C 3 HOH A 7 183 183 HOH HOH . C 3 HOH A 8 184 184 HOH HOH . C 3 HOH A 9 185 185 HOH HOH . C 3 HOH A 10 186 186 HOH HOH . C 3 HOH A 11 187 187 HOH HOH . C 3 HOH A 12 188 188 HOH HOH . C 3 HOH A 13 189 189 HOH HOH . C 3 HOH A 14 190 190 HOH HOH . C 3 HOH A 15 191 191 HOH HOH . C 3 HOH A 16 192 192 HOH HOH . C 3 HOH A 17 193 193 HOH HOH . C 3 HOH A 18 194 194 HOH HOH . C 3 HOH A 19 195 195 HOH HOH . C 3 HOH A 20 196 196 HOH HOH . C 3 HOH A 21 197 197 HOH HOH . C 3 HOH A 22 198 198 HOH HOH . C 3 HOH A 23 199 199 HOH HOH . C 3 HOH A 24 200 200 HOH HOH . C 3 HOH A 25 201 201 HOH HOH . C 3 HOH A 26 202 202 HOH HOH . C 3 HOH A 27 203 203 HOH HOH . C 3 HOH A 28 204 204 HOH HOH . C 3 HOH A 29 205 205 HOH HOH . C 3 HOH A 30 206 206 HOH HOH . C 3 HOH A 31 207 207 HOH HOH . C 3 HOH A 32 208 208 HOH HOH . C 3 HOH A 33 209 209 HOH HOH . C 3 HOH A 34 210 210 HOH HOH . C 3 HOH A 35 211 211 HOH HOH . C 3 HOH A 36 212 212 HOH HOH . C 3 HOH A 37 213 213 HOH HOH . C 3 HOH A 38 214 214 HOH HOH . C 3 HOH A 39 215 215 HOH HOH . C 3 HOH A 40 216 216 HOH HOH . C 3 HOH A 41 217 217 HOH HOH . C 3 HOH A 42 218 218 HOH HOH . C 3 HOH A 43 219 219 HOH HOH . C 3 HOH A 44 220 220 HOH HOH . C 3 HOH A 45 221 221 HOH HOH . C 3 HOH A 46 222 222 HOH HOH . C 3 HOH A 47 223 223 HOH HOH . C 3 HOH A 48 224 224 HOH HOH . C 3 HOH A 49 225 225 HOH HOH . C 3 HOH A 50 226 226 HOH HOH . C 3 HOH A 51 227 227 HOH HOH . C 3 HOH A 52 228 228 HOH HOH . C 3 HOH A 53 229 229 HOH HOH . C 3 HOH A 54 230 230 HOH HOH . C 3 HOH A 55 231 231 HOH HOH . C 3 HOH A 56 232 232 HOH HOH . C 3 HOH A 57 233 233 HOH HOH . C 3 HOH A 58 234 234 HOH HOH . C 3 HOH A 59 235 235 HOH HOH . C 3 HOH A 60 236 236 HOH HOH . C 3 HOH A 61 237 237 HOH HOH . C 3 HOH A 62 238 238 HOH HOH . C 3 HOH A 63 239 239 HOH HOH . C 3 HOH A 64 240 240 HOH HOH . C 3 HOH A 65 241 241 HOH HOH . C 3 HOH A 66 242 242 HOH HOH . C 3 HOH A 67 243 243 HOH HOH . C 3 HOH A 68 244 244 HOH HOH . C 3 HOH A 69 245 245 HOH HOH . C 3 HOH A 70 246 246 HOH HOH . C 3 HOH A 71 247 247 HOH HOH . C 3 HOH A 72 248 248 HOH HOH . C 3 HOH A 73 249 249 HOH HOH . C 3 HOH A 74 250 250 HOH HOH . C 3 HOH A 75 251 251 HOH HOH . C 3 HOH A 76 252 252 HOH HOH . C 3 HOH A 77 253 253 HOH HOH . C 3 HOH A 78 254 254 HOH HOH . C 3 HOH A 79 255 255 HOH HOH . C 3 HOH A 80 256 256 HOH HOH . C 3 HOH A 81 257 257 HOH HOH . C 3 HOH A 82 258 258 HOH HOH . C 3 HOH A 83 259 259 HOH HOH . C 3 HOH A 84 260 260 HOH HOH . C 3 HOH A 85 261 261 HOH HOH . C 3 HOH A 86 262 262 HOH HOH . C 3 HOH A 87 263 263 HOH HOH . C 3 HOH A 88 264 264 HOH HOH . C 3 HOH A 89 265 265 HOH HOH . C 3 HOH A 90 266 266 HOH HOH . C 3 HOH A 91 267 267 HOH HOH . C 3 HOH A 92 268 268 HOH HOH . C 3 HOH A 93 269 269 HOH HOH . C 3 HOH A 94 270 270 HOH HOH . C 3 HOH A 95 271 271 HOH HOH . C 3 HOH A 96 272 272 HOH HOH . C 3 HOH A 97 273 273 HOH HOH . C 3 HOH A 98 276 276 HOH HOH . C 3 HOH A 99 277 277 HOH HOH . C 3 HOH A 100 278 278 HOH HOH . C 3 HOH A 101 279 279 HOH HOH . C 3 HOH A 102 280 280 HOH HOH . C 3 HOH A 103 281 281 HOH HOH . C 3 HOH A 104 282 282 HOH HOH . C 3 HOH A 105 283 283 HOH HOH . C 3 HOH A 106 284 284 HOH HOH . C 3 HOH A 107 285 285 HOH HOH . C 3 HOH A 108 286 286 HOH HOH . C 3 HOH A 109 287 287 HOH HOH . C 3 HOH A 110 288 288 HOH HOH . C 3 HOH A 111 289 289 HOH HOH . C 3 HOH A 112 290 290 HOH HOH . C 3 HOH A 113 291 291 HOH HOH . C 3 HOH A 114 292 292 HOH HOH . C 3 HOH A 115 294 294 HOH HOH . C 3 HOH A 116 295 295 HOH HOH . C 3 HOH A 117 296 296 HOH HOH . C 3 HOH A 118 297 297 HOH HOH . C 3 HOH A 119 298 298 HOH HOH . C 3 HOH A 120 299 299 HOH HOH . C 3 HOH A 121 300 300 HOH HOH . C 3 HOH A 122 301 301 HOH HOH . C 3 HOH A 123 303 303 HOH HOH . C 3 HOH A 124 304 304 HOH HOH . C 3 HOH A 125 305 305 HOH HOH . C 3 HOH A 126 306 306 HOH HOH . C 3 HOH A 127 307 307 HOH HOH . C 3 HOH A 128 310 310 HOH HOH . C 3 HOH A 129 311 311 HOH HOH . C 3 HOH A 130 312 312 HOH HOH . C 3 HOH A 131 313 313 HOH HOH . C 3 HOH A 132 314 314 HOH HOH . C 3 HOH A 133 316 316 HOH HOH . C 3 HOH A 134 317 317 HOH HOH . C 3 HOH A 135 318 318 HOH HOH . C 3 HOH A 136 319 319 HOH HOH . C 3 HOH A 137 320 320 HOH HOH . C 3 HOH A 138 321 321 HOH HOH . C 3 HOH A 139 322 322 HOH HOH . C 3 HOH A 140 323 323 HOH HOH . C 3 HOH A 141 324 324 HOH HOH . C 3 HOH A 142 325 325 HOH HOH . C 3 HOH A 143 326 326 HOH HOH . C 3 HOH A 144 327 327 HOH HOH . C 3 HOH A 145 328 328 HOH HOH . C 3 HOH A 146 329 329 HOH HOH . C 3 HOH A 147 330 330 HOH HOH . C 3 HOH A 148 331 331 HOH HOH . C 3 HOH A 149 332 332 HOH HOH . C 3 HOH A 150 333 333 HOH HOH . C 3 HOH A 151 334 334 HOH HOH . C 3 HOH A 152 335 335 HOH HOH . C 3 HOH A 153 336 336 HOH HOH . C 3 HOH A 154 337 337 HOH HOH . C 3 HOH A 155 338 338 HOH HOH . C 3 HOH A 156 339 339 HOH HOH . C 3 HOH A 157 341 341 HOH HOH . C 3 HOH A 158 342 342 HOH HOH . C 3 HOH A 159 344 344 HOH HOH . C 3 HOH A 160 346 346 HOH HOH . C 3 HOH A 161 347 347 HOH HOH . C 3 HOH A 162 348 348 HOH HOH . C 3 HOH A 163 349 349 HOH HOH . C 3 HOH A 164 350 350 HOH HOH . C 3 HOH A 165 351 351 HOH HOH . C 3 HOH A 166 352 352 HOH HOH . C 3 HOH A 167 353 353 HOH HOH . C 3 HOH A 168 354 354 HOH HOH . C 3 HOH A 169 355 355 HOH HOH . C 3 HOH A 170 357 357 HOH HOH . C 3 HOH A 171 358 358 HOH HOH . C 3 HOH A 172 360 360 HOH HOH . C 3 HOH A 173 361 361 HOH HOH . C 3 HOH A 174 362 362 HOH HOH . C 3 HOH A 175 364 364 HOH HOH . C 3 HOH A 176 366 366 HOH HOH . C 3 HOH A 177 367 367 HOH HOH . C 3 HOH A 178 368 368 HOH HOH . C 3 HOH A 179 370 370 HOH HOH . C 3 HOH A 180 371 371 HOH HOH . C 3 HOH A 181 372 372 HOH HOH . C 3 HOH A 182 373 373 HOH HOH . C 3 HOH A 183 374 374 HOH HOH . C 3 HOH A 184 375 375 HOH HOH . C 3 HOH A 185 377 377 HOH HOH . C 3 HOH A 186 379 379 HOH HOH . C 3 HOH A 187 383 383 HOH HOH . C 3 HOH A 188 384 384 HOH HOH . C 3 HOH A 189 388 388 HOH HOH . C 3 HOH A 190 390 390 HOH HOH . C 3 HOH A 191 395 395 HOH HOH . C 3 HOH A 192 396 396 HOH HOH . C 3 HOH A 193 411 411 HOH HOH . C 3 HOH A 194 418 418 HOH HOH . C 3 HOH A 195 419 419 HOH HOH . C 3 HOH A 196 432 432 HOH HOH . C 3 HOH A 197 456 456 HOH HOH . C 3 HOH A 198 457 457 HOH HOH . C 3 HOH A 199 458 458 HOH HOH . C 3 HOH A 200 477 477 HOH HOH . C 3 HOH A 201 480 480 HOH HOH . C 3 HOH A 202 482 482 HOH HOH . C 3 HOH A 203 490 490 HOH HOH . C 3 HOH A 204 501 501 HOH HOH . C 3 HOH A 205 513 513 HOH HOH . C 3 HOH A 206 525 525 HOH HOH . C 3 HOH A 207 532 532 HOH HOH . C 3 HOH A 208 556 556 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RTL . . . B 2 29.274 21.19 44.34 1 11.94 ? C1 RTL 176 A 1 HETATM 2 C C2 RTL . . . B 2 29.061 21.309 42.821 1 13.94 ? C2 RTL 176 A 1 HETATM 3 C C3 RTL . . . B 2 30.136 20.704 41.917 1 13.83 ? C3 RTL 176 A 1 HETATM 4 C C4 RTL . . . B 2 30.63 19.283 42.333 1 14.27 ? C4 RTL 176 A 1 HETATM 5 C C5 RTL . . . B 2 30.804 19.076 43.857 1 15.27 ? C5 RTL 176 A 1 HETATM 6 C C6 RTL . . . B 2 30.02 19.921 44.79 1 14.55 ? C6 RTL 176 A 1 HETATM 7 C C7 RTL . . . B 2 30.13 19.697 46.272 1 15.61 ? C7 RTL 176 A 1 HETATM 8 C C8 RTL . . . B 2 31.309 19.505 46.989 1 16.46 ? C8 RTL 176 A 1 HETATM 9 C C9 RTL . . . B 2 31.345 19.23 48.35 1 16.01 ? C9 RTL 176 A 1 HETATM 10 C C10 RTL . . . B 2 32.64 19.277 48.926 1 16.13 ? C10 RTL 176 A 1 HETATM 11 C C11 RTL . . . B 2 32.885 18.939 50.229 1 16.68 ? C11 RTL 176 A 1 HETATM 12 C C12 RTL . . . B 2 34.202 18.712 50.512 1 16.35 ? C12 RTL 176 A 1 HETATM 13 C C13 RTL . . . B 2 34.717 18.386 51.813 1 18.23 ? C13 RTL 176 A 1 HETATM 14 C C14 RTL . . . B 2 36.124 18.05 51.902 1 23.94 ? C14 RTL 176 A 1 HETATM 15 C C15 RTL . . . B 2 36.817 17.662 53.188 1 20.45 ? C15 RTL 176 A 1 HETATM 16 O O1 RTL . . . B 2 36.886 16.274 53.447 1 24.29 ? O1 RTL 176 A 1 HETATM 17 C C16 RTL . . . B 2 27.891 21.301 45.021 1 15.02 ? C16 RTL 176 A 1 HETATM 18 C C17 RTL . . . B 2 30.17 22.369 44.707 1 15.91 ? C17 RTL 176 A 1 HETATM 19 C C18 RTL . . . B 2 31.323 17.707 44.227 1 17.47 ? C18 RTL 176 A 1 HETATM 20 C C19 RTL . . . B 2 30.064 18.917 49.164 1 18.99 ? C19 RTL 176 A 1 HETATM 21 C C20 RTL . . . B 2 33.778 18.343 53.06 1 24.76 ? C20 RTL 176 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #