data_1KTS # _model_server_result.job_id -1Q7yEhzsew0A3Mp1Rtx9Q _model_server_result.datetime_utc '2024-10-24 04:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":999}' # _entry.id 1KTS # _exptl.entry_id 1KTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.564 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-({2-[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-3-METHYL-3H-BENZOIMIDAZOLE-5-CARBONYL}-PYRIDIN-2-YL-AMINO)-PROPIONIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.8 _cell.angle_gamma 90 _cell.entry_id 1KTS _cell.length_a 69.9 _cell.length_b 71 _cell.length_c 72.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C C GLU 8 C GLU 262 1_555 C N TYS 9 C TYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 C C TYS 9 C TYS 263 1_555 C N LEU 10 C LEU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C27 H29 N7 O3' _chem_comp.formula_weight 499.564 _chem_comp.id C24 _chem_comp.mon_nstd_flag . _chem_comp.name '3-({2-[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-3-METHYL-3H-BENZOIMIDAZOLE-5-CARBONYL}-PYRIDIN-2-YL-AMINO)-PROPIONIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KTS _atom_sites.fract_transf_matrix[1][1] 0.014306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002471 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 C24 B 1 999 999 C24 C24 . E 5 HOH A 1 512 512 HOH WAT . E 5 HOH A 2 523 523 HOH WAT . E 5 HOH A 3 526 526 HOH WAT . E 5 HOH A 4 531 531 HOH WAT . E 5 HOH A 5 536 536 HOH WAT . E 5 HOH A 6 548 548 HOH WAT . E 5 HOH A 7 550 550 HOH WAT . E 5 HOH A 8 551 551 HOH WAT . E 5 HOH A 9 552 552 HOH WAT . E 5 HOH A 10 559 559 HOH WAT . E 5 HOH A 11 566 566 HOH WAT . E 5 HOH A 12 574 574 HOH WAT . E 5 HOH A 13 576 576 HOH WAT . E 5 HOH A 14 588 588 HOH WAT . E 5 HOH A 15 591 591 HOH WAT . E 5 HOH A 16 593 593 HOH WAT . E 5 HOH A 17 596 596 HOH WAT . E 5 HOH A 18 601 601 HOH WAT . E 5 HOH A 19 701 701 HOH WAT . E 5 HOH A 20 705 705 HOH WAT . E 5 HOH A 21 706 706 HOH WAT . E 5 HOH A 22 708 708 HOH WAT . E 5 HOH A 23 721 721 HOH WAT . E 5 HOH A 24 727 727 HOH WAT . E 5 HOH A 25 730 730 HOH WAT . E 5 HOH A 26 736 736 HOH WAT . F 5 HOH B 1 500 500 HOH WAT . F 5 HOH B 2 501 501 HOH WAT . F 5 HOH B 3 502 502 HOH WAT . F 5 HOH B 4 503 503 HOH WAT . F 5 HOH B 5 504 504 HOH WAT . F 5 HOH B 6 505 505 HOH WAT . F 5 HOH B 7 506 506 HOH WAT . F 5 HOH B 8 507 507 HOH WAT . F 5 HOH B 9 508 508 HOH WAT . F 5 HOH B 10 509 509 HOH WAT . F 5 HOH B 11 510 510 HOH WAT . F 5 HOH B 12 511 511 HOH WAT . F 5 HOH B 13 513 513 HOH WAT . F 5 HOH B 14 514 514 HOH WAT . F 5 HOH B 15 515 515 HOH WAT . F 5 HOH B 16 516 516 HOH WAT . F 5 HOH B 17 517 517 HOH WAT . F 5 HOH B 18 518 518 HOH WAT . F 5 HOH B 19 519 519 HOH WAT . F 5 HOH B 20 520 520 HOH WAT . F 5 HOH B 21 521 521 HOH WAT . F 5 HOH B 22 522 522 HOH WAT . F 5 HOH B 23 524 524 HOH WAT . F 5 HOH B 24 525 525 HOH WAT . F 5 HOH B 25 527 527 HOH WAT . F 5 HOH B 26 528 528 HOH WAT . F 5 HOH B 27 529 529 HOH WAT . F 5 HOH B 28 530 530 HOH WAT . F 5 HOH B 29 532 532 HOH WAT . F 5 HOH B 30 533 533 HOH WAT . F 5 HOH B 31 534 534 HOH WAT . F 5 HOH B 32 535 535 HOH WAT . F 5 HOH B 33 537 537 HOH WAT . F 5 HOH B 34 538 538 HOH WAT . F 5 HOH B 35 539 539 HOH WAT . F 5 HOH B 36 540 540 HOH WAT . F 5 HOH B 37 541 541 HOH WAT . F 5 HOH B 38 542 542 HOH WAT . F 5 HOH B 39 544 544 HOH WAT . F 5 HOH B 40 545 545 HOH WAT . F 5 HOH B 41 546 546 HOH WAT . F 5 HOH B 42 547 547 HOH WAT . F 5 HOH B 43 549 549 HOH WAT . F 5 HOH B 44 553 553 HOH WAT . F 5 HOH B 45 554 554 HOH WAT . F 5 HOH B 46 555 555 HOH WAT . F 5 HOH B 47 557 557 HOH WAT . F 5 HOH B 48 558 558 HOH WAT . F 5 HOH B 49 560 560 HOH WAT . F 5 HOH B 50 561 561 HOH WAT . F 5 HOH B 51 562 562 HOH WAT . F 5 HOH B 52 563 563 HOH WAT . F 5 HOH B 53 564 564 HOH WAT . F 5 HOH B 54 565 565 HOH WAT . F 5 HOH B 55 567 567 HOH WAT . F 5 HOH B 56 568 568 HOH WAT . F 5 HOH B 57 570 570 HOH WAT . F 5 HOH B 58 572 572 HOH WAT . F 5 HOH B 59 573 573 HOH WAT . F 5 HOH B 60 577 577 HOH WAT . F 5 HOH B 61 578 578 HOH WAT . F 5 HOH B 62 579 579 HOH WAT . F 5 HOH B 63 580 580 HOH WAT . F 5 HOH B 64 581 581 HOH WAT . F 5 HOH B 65 582 582 HOH WAT . F 5 HOH B 66 583 583 HOH WAT . F 5 HOH B 67 584 584 HOH WAT . F 5 HOH B 68 585 585 HOH WAT . F 5 HOH B 69 586 586 HOH WAT . F 5 HOH B 70 587 587 HOH WAT . F 5 HOH B 71 589 589 HOH WAT . F 5 HOH B 72 590 590 HOH WAT . F 5 HOH B 73 594 594 HOH WAT . F 5 HOH B 74 595 595 HOH WAT . F 5 HOH B 75 597 597 HOH WAT . F 5 HOH B 76 598 598 HOH WAT . F 5 HOH B 77 599 599 HOH WAT . F 5 HOH B 78 600 600 HOH WAT . F 5 HOH B 79 602 602 HOH WAT . F 5 HOH B 80 700 700 HOH WAT . F 5 HOH B 81 702 702 HOH WAT . F 5 HOH B 82 703 703 HOH WAT . F 5 HOH B 83 704 704 HOH WAT . F 5 HOH B 84 707 707 HOH WAT . F 5 HOH B 85 710 710 HOH WAT . F 5 HOH B 86 711 711 HOH WAT . F 5 HOH B 87 712 712 HOH WAT . F 5 HOH B 88 713 713 HOH WAT . F 5 HOH B 89 714 714 HOH WAT . F 5 HOH B 90 715 715 HOH WAT . F 5 HOH B 91 716 716 HOH WAT . F 5 HOH B 92 717 717 HOH WAT . F 5 HOH B 93 718 718 HOH WAT . F 5 HOH B 94 719 719 HOH WAT . F 5 HOH B 95 720 720 HOH WAT . F 5 HOH B 96 723 723 HOH WAT . F 5 HOH B 97 724 724 HOH WAT . F 5 HOH B 98 725 725 HOH WAT . F 5 HOH B 99 728 728 HOH WAT . F 5 HOH B 100 731 731 HOH WAT . F 5 HOH B 101 732 732 HOH WAT . F 5 HOH B 102 734 734 HOH WAT . F 5 HOH B 103 735 735 HOH WAT . F 5 HOH B 104 737 737 HOH WAT . G 5 HOH C 1 569 569 HOH WAT . G 5 HOH C 2 571 571 HOH WAT . G 5 HOH C 3 709 709 HOH WAT . G 5 HOH C 4 722 722 HOH WAT . G 5 HOH C 5 733 733 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 C24 . . . D 4 14.324 -11.753 20.775 1 24.98 ? C2 C24 999 B 1 HETATM 2 N N10 C24 . . . D 4 15.32 -11.916 19.912 1 25.21 ? N10 C24 999 B 1 HETATM 3 C C11 C24 . . . D 4 16.725 -11.623 20.195 1 30.87 ? C11 C24 999 B 1 HETATM 4 C C12 C24 . . . D 4 17.505 -12.665 21.001 1 31.98 ? C12 C24 999 B 1 HETATM 5 N N16 C24 . . . D 4 16.885 -13.419 21.915 1 34.69 ? N16 C24 999 B 1 HETATM 6 C C15 C24 . . . D 4 17.932 -14.118 22.38 1 34.44 ? C15 C24 999 B 1 HETATM 7 C C18 C24 . . . D 4 17.854 -15.049 23.369 1 37.61 ? C18 C24 999 B 1 HETATM 8 C C19 C24 . . . D 4 18.951 -15.721 23.807 1 39.52 ? C19 C24 999 B 1 HETATM 9 C C40 C24 . . . D 4 18.787 -16.672 24.876 1 41.15 ? C40 C24 999 B 1 HETATM 10 O O21 C24 . . . D 4 17.789 -17.4 24.78 1 43.63 ? O21 C24 999 B 1 HETATM 11 N N22 C24 . . . D 4 19.595 -16.725 25.963 1 38.32 ? N22 C24 999 B 1 HETATM 12 C C23 C24 . . . D 4 20.564 -15.805 26.139 1 38 ? C23 C24 999 B 1 HETATM 13 C C24 C24 . . . D 4 20.21 -14.617 26.701 1 36.64 ? C24 C24 999 B 1 HETATM 14 C C25 C24 . . . D 4 21.09 -13.542 26.753 1 33.43 ? C25 C24 999 B 1 HETATM 15 C C26 C24 . . . D 4 22.354 -13.67 26.225 1 34.04 ? C26 C24 999 B 1 HETATM 16 C C27 C24 . . . D 4 22.736 -14.877 25.655 1 38.18 ? C27 C24 999 B 1 HETATM 17 N N28 C24 . . . D 4 21.798 -15.949 25.624 1 37.68 ? N28 C24 999 B 1 HETATM 18 C C29 C24 . . . D 4 19.395 -17.727 27.013 0 38.51 ? C29 C24 999 B 1 HETATM 19 C C30 C24 . . . D 4 18.298 -17.339 27.993 0 37.99 ? C30 C24 999 B 1 HETATM 20 C C31 C24 . . . D 4 18.206 -18.271 29.188 0 37.87 ? C31 C24 999 B 1 HETATM 21 O O32 C24 . . . D 4 18.769 -17.991 30.247 0 37.88 ? O32 C24 999 B 1 HETATM 22 O O33 C24 . . . D 4 17.413 -19.489 29.115 0 37.79 ? O33 C24 999 B 1 HETATM 23 C C34 C24 . . . D 4 18.173 -20.663 28.711 0 37.66 ? C34 C24 999 B 1 HETATM 24 C C35 C24 . . . D 4 19.021 -21.167 29.87 0 37.76 ? C35 C24 999 B 1 HETATM 25 C C20 C24 . . . D 4 20.139 -15.351 23.155 1 36.13 ? C20 C24 999 B 1 HETATM 26 C C21 C24 . . . D 4 20.227 -14.391 22.137 1 31.99 ? C21 C24 999 B 1 HETATM 27 C C14 C24 . . . D 4 19.086 -13.782 21.778 1 32.04 ? C14 C24 999 B 1 HETATM 28 N N13 C24 . . . D 4 18.831 -12.837 20.857 1 31.41 ? N13 C24 999 B 1 HETATM 29 C C17 C24 . . . D 4 19.761 -12.187 19.918 1 29.09 ? C17 C24 999 B 1 HETATM 30 C C3 C24 . . . D 4 14.314 -10.775 21.687 1 26.61 ? C3 C24 999 B 1 HETATM 31 C C4 C24 . . . D 4 13.273 -10.7 22.613 1 24.34 ? C4 C24 999 B 1 HETATM 32 C C5 C24 . . . D 4 12.266 -11.601 22.633 1 25.39 ? C5 C24 999 B 1 HETATM 33 C C7 C24 . . . D 4 11.271 -11.556 23.597 1 31.1 ? C7 C24 999 B 1 HETATM 34 N N9 C24 . . . D 4 11.242 -10.586 24.509 1 33.9 ? N9 C24 999 B 1 HETATM 35 N N8 C24 . . . D 4 10.328 -12.491 23.634 1 31.29 ? N8 C24 999 B 1 HETATM 36 C C6 C24 . . . D 4 12.299 -12.563 21.697 1 23.9 ? C6 C24 999 B 1 HETATM 37 C C1 C24 . . . D 4 13.335 -12.642 20.77 1 24.02 ? C1 C24 999 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #