data_1KV2 # _model_server_result.job_id 5hcnysRK729SgO3LiMt9TQ _model_server_result.datetime_utc '2024-10-20 20:45:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":391}' # _entry.id 1KV2 # _exptl.entry_id 1KV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.657 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KV2 _cell.length_a 64 _cell.length_b 74 _cell.length_c 76.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H37 N5 O3' _chem_comp.formula_weight 527.657 _chem_comp.id B96 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 B96 doub 70 n n C1 N2 B96 sing 71 n n C1 N9 B96 sing 72 n n N2 C3 B96 sing 73 n n N2 H2 B96 sing 74 n n C3 C4 B96 doub 75 n y C3 C8 B96 sing 76 n y C4 C5 B96 sing 77 n y C4 C31 B96 sing 78 n y C5 C6 B96 doub 79 n y C5 C34 B96 sing 80 n y C6 C7 B96 sing 81 n y C6 O41 B96 sing 82 n n C31 C32 B96 doub 83 n y C31 H31 B96 sing 84 n n C32 C33 B96 sing 85 n y C32 H32 B96 sing 86 n n C33 C34 B96 doub 87 n y C33 H33 B96 sing 88 n n C34 H34 B96 sing 89 n n C7 C8 B96 doub 90 n y C7 H7 B96 sing 91 n n C8 H8 B96 sing 92 n n N9 C10 B96 sing 93 n n N9 H9 B96 sing 94 n n C10 C14 B96 doub 95 n y C10 N11 B96 sing 96 n y C14 C13 B96 sing 97 n y C14 H14 B96 sing 98 n n C13 N12 B96 doub 99 n y C13 C16 B96 sing 100 n n N12 N11 B96 sing 101 n y N11 C15 B96 sing 102 n y C15 C20 B96 doub 103 n y C15 C24 B96 sing 104 n y C17 C16 B96 sing 105 n n C17 H171 B96 sing 106 n n C17 H172 B96 sing 107 n n C17 H173 B96 sing 108 n n C18 C16 B96 sing 109 n n C18 H181 B96 sing 110 n n C18 H182 B96 sing 111 n n C18 H183 B96 sing 112 n n C19 C16 B96 sing 113 n n C19 H191 B96 sing 114 n n C19 H192 B96 sing 115 n n C19 H193 B96 sing 116 n n C20 C21 B96 sing 117 n y C20 H20 B96 sing 118 n n C21 C22 B96 doub 119 n y C21 H21 B96 sing 120 n n C22 C23 B96 sing 121 n y C22 C25 B96 sing 122 n n C23 C24 B96 doub 123 n y C23 H23 B96 sing 124 n n C24 H24 B96 sing 125 n n C25 H251 B96 sing 126 n n C25 H252 B96 sing 127 n n C25 H253 B96 sing 128 n n O41 C42 B96 sing 129 n n C42 C43 B96 sing 130 n n C42 H421 B96 sing 131 n n C42 H422 B96 sing 132 n n C43 N44 B96 sing 133 n n C43 H431 B96 sing 134 n n C43 H432 B96 sing 135 n n N44 C45 B96 sing 136 n n N44 C49 B96 sing 137 n n C45 C46 B96 sing 138 n n C45 H451 B96 sing 139 n n C45 H452 B96 sing 140 n n C46 O47 B96 sing 141 n n C46 H461 B96 sing 142 n n C46 H462 B96 sing 143 n n O47 C48 B96 sing 144 n n C48 C49 B96 sing 145 n n C48 H481 B96 sing 146 n n C48 H482 B96 sing 147 n n C49 H491 B96 sing 148 n n C49 H492 B96 sing 149 n n # _atom_sites.entry_id 1KV2 _atom_sites.fract_transf_matrix[1][1] 0.015625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id B96 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 391 _pdbx_nonpoly_scheme.auth_seq_num 391 _pdbx_nonpoly_scheme.pdb_mon_id B96 _pdbx_nonpoly_scheme.auth_mon_id B96 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B96 . . . B 2 32.85 33.999 15.352 1 20.78 ? C1 B96 391 A 1 HETATM 2 O O1 B96 . . . B 2 31.963 34.537 16.031 1 15.73 ? O1 B96 391 A 1 HETATM 3 N N2 B96 . . . B 2 34.077 33.892 15.84 1 18.71 ? N2 B96 391 A 1 HETATM 4 C C3 B96 . . . B 2 34.403 34.449 16.993 1 23.2 ? C3 B96 391 A 1 HETATM 5 C C4 B96 . . . B 2 35.497 35.257 16.994 1 21.18 ? C4 B96 391 A 1 HETATM 6 C C5 B96 . . . B 2 35.901 35.88 18.143 1 22 ? C5 B96 391 A 1 HETATM 7 C C6 B96 . . . B 2 35.181 35.697 19.281 1 21.7 ? C6 B96 391 A 1 HETATM 8 C C31 B96 . . . B 2 36.222 35.444 15.82 1 24.87 ? C31 B96 391 A 1 HETATM 9 C C32 B96 . . . B 2 37.371 36.271 15.806 1 20.85 ? C32 B96 391 A 1 HETATM 10 C C33 B96 . . . B 2 37.783 36.897 16.951 1 18.72 ? C33 B96 391 A 1 HETATM 11 C C34 B96 . . . B 2 37.055 36.714 18.117 1 17.11 ? C34 B96 391 A 1 HETATM 12 C C7 B96 . . . B 2 34.07 34.873 19.277 1 19.9 ? C7 B96 391 A 1 HETATM 13 C C8 B96 . . . B 2 33.68 34.245 18.087 1 23.66 ? C8 B96 391 A 1 HETATM 14 N N9 B96 . . . B 2 32.603 33.468 14.156 1 35.22 ? N9 B96 391 A 1 HETATM 15 C C10 B96 . . . B 2 31.449 33.497 13.486 1 30.2 ? C10 B96 391 A 1 HETATM 16 C C14 B96 . . . B 2 30.623 34.543 13.372 1 23.97 ? C14 B96 391 A 1 HETATM 17 C C13 B96 . . . B 2 29.648 34.184 12.514 1 16.33 ? C13 B96 391 A 1 HETATM 18 N N12 B96 . . . B 2 29.843 32.943 12.096 1 20.64 ? N12 B96 391 A 1 HETATM 19 N N11 B96 . . . B 2 31.002 32.522 12.731 1 26.13 ? N11 B96 391 A 1 HETATM 20 C C15 B96 . . . B 2 31.589 31.335 12.555 1 20.56 ? C15 B96 391 A 1 HETATM 21 C C17 B96 . . . B 2 27.903 35.654 13.318 1 15.19 ? C17 B96 391 A 1 HETATM 22 C C18 B96 . . . B 2 27.57 34.241 11.375 1 2.24 ? C18 B96 391 A 1 HETATM 23 C C19 B96 . . . B 2 29.09 36.109 11.219 1 5.75 ? C19 B96 391 A 1 HETATM 24 C C16 B96 . . . B 2 28.657 34.969 12.147 1 12.63 ? C16 B96 391 A 1 HETATM 25 C C20 B96 . . . B 2 31.751 30.902 11.307 1 21.54 ? C20 B96 391 A 1 HETATM 26 C C21 B96 . . . B 2 32.386 29.713 11.046 1 17.85 ? C21 B96 391 A 1 HETATM 27 C C22 B96 . . . B 2 32.855 28.962 12.08 1 20.05 ? C22 B96 391 A 1 HETATM 28 C C23 B96 . . . B 2 32.689 29.399 13.387 1 22.62 ? C23 B96 391 A 1 HETATM 29 C C24 B96 . . . B 2 32.042 30.608 13.617 1 17.79 ? C24 B96 391 A 1 HETATM 30 C C25 B96 . . . B 2 33.555 27.691 11.799 1 19.56 ? C25 B96 391 A 1 HETATM 31 O O41 B96 . . . B 2 35.561 36.318 20.355 1 29.78 ? O41 B96 391 A 1 HETATM 32 C C42 B96 . . . B 2 34.87 35.97 21.544 1 29.98 ? C42 B96 391 A 1 HETATM 33 C C43 B96 . . . B 2 35.204 37.026 22.608 1 31.15 ? C43 B96 391 A 1 HETATM 34 N N44 B96 . . . B 2 34.166 38.079 22.813 1 34.77 ? N44 B96 391 A 1 HETATM 35 C C45 B96 . . . B 2 34.094 38.898 21.608 1 31.57 ? C45 B96 391 A 1 HETATM 36 C C46 B96 . . . B 2 33.833 40.393 21.846 1 29.55 ? C46 B96 391 A 1 HETATM 37 O O47 B96 . . . B 2 34.725 40.908 22.803 1 37.7 ? O47 B96 391 A 1 HETATM 38 C C48 B96 . . . B 2 34.353 40.345 24.006 1 36.14 ? C48 B96 391 A 1 HETATM 39 C C49 B96 . . . B 2 34.601 38.844 23.997 1 35.08 ? C49 B96 391 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #