data_1KVK
#
_model_server_result.job_id            7Yw--4pjfENY9CkwY-2dmg 
_model_server_result.datetime_utc      '2024-10-24 04:33:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kvk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":535}' 
#
_entry.id    1KVK 
#
_exptl.entry_id    1KVK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KVK 
_cell.length_a            78.63 
_cell.length_b            118.7 
_cell.length_c            42.84 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KVK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 78.63 118.7 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 146 A SER 146 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc2 A OE2 GLU 193 A GLU 193 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? 
metalc ? metalc3 C O3G ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc4 C O1B ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1KVK 
_atom_sites.fract_transf_matrix[1][1]    0.012718 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023343 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 536 536 MG MG . 
C 3 ATP A 1 535 535 ATP ATP . 
D 4 HOH A 1 1001 1001 HOH HOH . 
D 4 HOH A 2 1002 1002 HOH HOH . 
D 4 HOH A 3 1003 1003 HOH HOH . 
D 4 HOH A 4 1004 1004 HOH HOH . 
D 4 HOH A 5 1005 1005 HOH HOH . 
D 4 HOH A 6 1006 1006 HOH HOH . 
D 4 HOH A 7 1007 1007 HOH HOH . 
D 4 HOH A 8 1008 1008 HOH HOH . 
D 4 HOH A 9 1009 1009 HOH HOH . 
D 4 HOH A 10 1010 1010 HOH HOH . 
D 4 HOH A 11 1011 1011 HOH HOH . 
D 4 HOH A 12 1012 1012 HOH HOH . 
D 4 HOH A 13 1013 1013 HOH HOH . 
D 4 HOH A 14 1014 1014 HOH HOH . 
D 4 HOH A 15 1015 1015 HOH HOH . 
D 4 HOH A 16 1016 1016 HOH HOH . 
D 4 HOH A 17 1017 1017 HOH HOH . 
D 4 HOH A 18 1018 1018 HOH HOH . 
D 4 HOH A 19 1019 1019 HOH HOH . 
D 4 HOH A 20 1020 1020 HOH HOH . 
D 4 HOH A 21 1021 1021 HOH HOH . 
D 4 HOH A 22 1022 1022 HOH HOH . 
D 4 HOH A 23 1023 1023 HOH HOH . 
D 4 HOH A 24 1024 1024 HOH HOH . 
D 4 HOH A 25 1025 1025 HOH HOH . 
D 4 HOH A 26 1026 1026 HOH HOH . 
D 4 HOH A 27 1027 1027 HOH HOH . 
D 4 HOH A 28 1028 1028 HOH HOH . 
D 4 HOH A 29 1029 1029 HOH HOH . 
D 4 HOH A 30 1030 1030 HOH HOH . 
D 4 HOH A 31 1031 1031 HOH HOH . 
D 4 HOH A 32 1032 1032 HOH HOH . 
D 4 HOH A 33 1033 1033 HOH HOH . 
D 4 HOH A 34 1034 1034 HOH HOH . 
D 4 HOH A 35 1035 1035 HOH HOH . 
D 4 HOH A 36 1036 1036 HOH HOH . 
D 4 HOH A 37 1037 1037 HOH HOH . 
D 4 HOH A 38 1038 1038 HOH HOH . 
D 4 HOH A 39 1039 1039 HOH HOH . 
D 4 HOH A 40 1040 1040 HOH HOH . 
D 4 HOH A 41 1041 1041 HOH HOH . 
D 4 HOH A 42 1042 1042 HOH HOH . 
D 4 HOH A 43 1043 1043 HOH HOH . 
D 4 HOH A 44 1044 1044 HOH HOH . 
D 4 HOH A 45 1045 1045 HOH HOH . 
D 4 HOH A 46 1046 1046 HOH HOH . 
D 4 HOH A 47 1047 1047 HOH HOH . 
D 4 HOH A 48 1048 1048 HOH HOH . 
D 4 HOH A 49 1049 1049 HOH HOH . 
D 4 HOH A 50 1051 1051 HOH HOH . 
D 4 HOH A 51 1052 1052 HOH HOH . 
D 4 HOH A 52 1053 1053 HOH HOH . 
D 4 HOH A 53 1054 1054 HOH HOH . 
D 4 HOH A 54 1055 1055 HOH HOH . 
D 4 HOH A 55 1056 1056 HOH HOH . 
D 4 HOH A 56 1057 1057 HOH HOH . 
D 4 HOH A 57 1058 1058 HOH HOH . 
D 4 HOH A 58 1059 1059 HOH HOH . 
D 4 HOH A 59 1060 1060 HOH HOH . 
D 4 HOH A 60 1061 1061 HOH HOH . 
D 4 HOH A 61 1062 1062 HOH HOH . 
D 4 HOH A 62 1063 1063 HOH HOH . 
D 4 HOH A 63 1064 1064 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 42.213 34.092 11.875 1 55.52 ? PG ATP 535 A 1 
HETATM 2 O O1G ATP . . . C 3 40.76 33.714 11.785 1 51.38 ? O1G ATP 535 A 1 
HETATM 3 O O2G ATP . . . C 3 42.674 35.633 11.577 1 54.32 ? O2G ATP 535 A 1 
HETATM 4 O O3G ATP . . . C 3 42.952 33.308 10.892 1 56.08 ? O3G ATP 535 A 1 
HETATM 5 P PB ATP . . . C 3 42.432 31.987 13.664 1 55.35 ? PB ATP 535 A 1 
HETATM 6 O O1B ATP . . . C 3 43.454 31.042 12.948 1 51.52 ? O1B ATP 535 A 1 
HETATM 7 O O2B ATP . . . C 3 42.316 32.008 15.144 1 53.39 ? O2B ATP 535 A 1 
HETATM 8 O O3B ATP . . . C 3 42.806 33.321 13.143 1 56.03 ? O3B ATP 535 A 1 
HETATM 9 P PA ATP . . . C 3 39.861 31.01 13.674 1 56.48 ? PA ATP 535 A 1 
HETATM 10 O O1A ATP . . . C 3 39.726 31.781 15.071 1 52.76 ? O1A ATP 535 A 1 
HETATM 11 O O2A ATP . . . C 3 38.585 31.336 12.69 1 55.93 ? O2A ATP 535 A 1 
HETATM 12 O O3A ATP . . . C 3 41.15 31.438 12.913 1 53.94 ? O3A ATP 535 A 1 
HETATM 13 O O5' ATP . . . C 3 40.001 29.468 13.878 1 55.41 ? O5' ATP 535 A 1 
HETATM 14 C C5' ATP . . . C 3 41.06 29.076 14.8 1 56.56 ? C5' ATP 535 A 1 
HETATM 15 C C4' ATP . . . C 3 41.037 27.625 14.783 1 56.68 ? C4' ATP 535 A 1 
HETATM 16 O O4' ATP . . . C 3 42.425 27.087 14.746 1 57.28 ? O4' ATP 535 A 1 
HETATM 17 C C3' ATP . . . C 3 40.279 27.023 15.984 1 56.73 ? C3' ATP 535 A 1 
HETATM 18 O O3' ATP . . . C 3 38.983 26.325 15.408 1 56.41 ? O3' ATP 535 A 1 
HETATM 19 C C2' ATP . . . C 3 41.363 26.082 16.646 1 56.09 ? C2' ATP 535 A 1 
HETATM 20 O O2' ATP . . . C 3 40.906 24.692 16.625 1 56.47 ? O2' ATP 535 A 1 
HETATM 21 C C1' ATP . . . C 3 42.712 26.18 15.785 1 56.91 ? C1' ATP 535 A 1 
HETATM 22 N N9 ATP . . . C 3 43.886 26.603 16.657 1 57.31 ? N9 ATP 535 A 1 
HETATM 23 C C8 ATP . . . C 3 44.514 27.958 16.943 1 57.51 ? C8 ATP 535 A 1 
HETATM 24 N N7 ATP . . . C 3 45.597 27.883 17.824 1 58.2 ? N7 ATP 535 A 1 
HETATM 25 C C5 ATP . . . C 3 45.689 26.528 18.116 1 58.63 ? C5 ATP 535 A 1 
HETATM 26 C C6 ATP . . . C 3 46.601 25.693 18.991 1 58.99 ? C6 ATP 535 A 1 
HETATM 27 N N6 ATP . . . C 3 47.64 26.214 19.745 1 58.57 ? N6 ATP 535 A 1 
HETATM 28 N N1 ATP . . . C 3 46.375 24.245 19.045 1 59.07 ? N1 ATP 535 A 1 
HETATM 29 C C2 ATP . . . C 3 45.278 23.563 18.277 1 59.36 ? C2 ATP 535 A 1 
HETATM 30 N N3 ATP . . . C 3 44.416 24.246 17.472 1 59.06 ? N3 ATP 535 A 1 
HETATM 31 C C4 ATP . . . C 3 44.636 25.716 17.405 1 58.13 ? C4 ATP 535 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           31 
#